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Search of human proteins with 62526026
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62526026 cutA divalent cation tolerance homolog isoform 3
[Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Ho... 349 6e-97
gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Ho... 323 6e-89
gi|62526024 cutA divalent cation tolerance homolog isoform 2 [Ho... 305 1e-83
gi|7706244 cutA divalent cation tolerance homolog isoform 2 [Hom... 305 1e-83
gi|62526022 cutA divalent cation tolerance homolog isoform 2 [Ho... 305 1e-83
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 30 0.85
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 30 0.85
gi|46852172 kinesin family member 13B [Homo sapiens] 29 1.9
gi|239755930 PREDICTED: hypothetical protein XP_002344747 [Homo ... 29 2.5
gi|239750450 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|239744752 PREDICTED: hypothetical protein XP_002343247 [Homo ... 29 2.5
gi|6912506 major intrinsic protein of lens fiber [Homo sapiens] 29 2.5
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 29 2.5
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 29 2.5
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 29 2.5
gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo ... 28 3.2
gi|239751704 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo ... 28 3.2
gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo ... 28 3.2
gi|239741478 PREDICTED: hypothetical protein XP_002342228 [Homo ... 28 3.2
gi|113722133 senataxin [Homo sapiens] 28 3.2
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 28 3.2
gi|225543215 antigen identified by monoclonal antibody Ki-67 iso... 28 5.5
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 28 5.5
gi|223941808 N-glycanase 1 isoform 4 [Homo sapiens] 28 5.5
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 28 5.5
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 28 5.5
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 28 5.5
gi|226246533 TOX high mobility group box family member 3 isoform... 28 5.5
gi|226054295 TOX high mobility group box family member 3 isoform... 28 5.5
>gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Homo
sapiens]
Length = 179
Score = 349 bits (896), Expect = 6e-97
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG 60
MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG
Sbjct: 1 MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG 60
Query: 61 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL 120
SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL
Sbjct: 61 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL 120
Query: 121 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 179
MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
Sbjct: 121 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 179
>gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Homo
sapiens]
Length = 198
Score = 323 bits (827), Expect = 6e-89
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 15 ASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVT 74
ASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVT
Sbjct: 34 ASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVT 93
Query: 75 CPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALT 134
CPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALT
Sbjct: 94 CPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALT 153
Query: 135 DFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 179
DFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
Sbjct: 154 DFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 198
>gi|62526024 cutA divalent cation tolerance homolog isoform 2 [Homo
sapiens]
Length = 156
Score = 305 bits (782), Expect = 1e-83
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 24 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 83
MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
Sbjct: 1 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 60
Query: 84 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 143
IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
Sbjct: 61 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 120
Query: 144 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 179
EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
Sbjct: 121 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 156
>gi|7706244 cutA divalent cation tolerance homolog isoform 2 [Homo
sapiens]
Length = 156
Score = 305 bits (782), Expect = 1e-83
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 24 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 83
MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
Sbjct: 1 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 60
Query: 84 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 143
IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
Sbjct: 61 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 120
Query: 144 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 179
EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
Sbjct: 121 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 156
>gi|62526022 cutA divalent cation tolerance homolog isoform 2 [Homo
sapiens]
Length = 156
Score = 305 bits (782), Expect = 1e-83
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 24 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 83
MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE
Sbjct: 1 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 60
Query: 84 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 143
IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY
Sbjct: 61 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 120
Query: 144 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 179
EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP
Sbjct: 121 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 156
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 30.4 bits (67), Expect = 0.85
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 28 LPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
LP R L+LP +L A +PP P+P S SG P + + CP
Sbjct: 82 LPAPQRYLMLPAPMLGSAE-TPPPVPAPGSPV-SGSSPFATQVGVIRCP 128
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 30.4 bits (67), Expect = 0.85
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 28 LPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
LP R L+LP +L A +PP P+P S SG P + + CP
Sbjct: 82 LPAPQRYLMLPAPMLGSAE-TPPPVPAPGSPV-SGSSPFATQVGVIRCP 128
>gi|46852172 kinesin family member 13B [Homo sapiens]
Length = 1826
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 7 PAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQ---PSPASDSGSGY 63
P VL+ + + L PA +P P + +T + +P Q PSP S++ SGY
Sbjct: 1514 PDVLVQTMGAPALKICDKPAKVPSPP-----PVIAVTAVTPAPEAQDGPPSPLSEASSGY 1568
Query: 64 VPGSVSAA 71
SVS A
Sbjct: 1569 FSHSVSTA 1576
>gi|239755930 PREDICTED: hypothetical protein XP_002344747 [Homo
sapiens]
Length = 64
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 41 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 82
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
>gi|239750450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 41 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 82
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
>gi|239744752 PREDICTED: hypothetical protein XP_002343247 [Homo
sapiens]
Length = 64
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 41 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 82
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
>gi|6912506 major intrinsic protein of lens fiber [Homo sapiens]
Length = 263
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 9 VLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSP 55
++ GG+ SLL F+ P L ++ RL +L +++G P P
Sbjct: 209 IIGGGLGSLLYDFLLFPRLKSISERLSVLKGAKPDVSNGQPEVTGEP 255
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 24 MPALL----PVASRLLLLPRVLLT-MASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
+PA L P+A+RL + R +L+ +AS P+PA G P AAF P
Sbjct: 1882 LPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAP 1939
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 24 MPALL----PVASRLLLLPRVLLT-MASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
+PA L P+A+RL + R +L+ +AS P+PA G P AAF P
Sbjct: 1848 LPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAP 1905
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 24 MPALL----PVASRLLLLPRVLLT-MASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
+PA L P+A+RL + R +L+ +AS P+PA G P AAF P
Sbjct: 1941 LPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAP 1998
>gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo
sapiens]
Length = 139
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 18 LLSFVWM-----PALLPVASRLLLLPRVLLTM---------ASGSPPTQPSPASDSGSGY 63
L+S VW+ P +LP + RLL P L+ + GS PT PS A G
Sbjct: 64 LVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQA----QGL 119
Query: 64 VPGSVSAAFVTC 75
PG S +C
Sbjct: 120 QPGRHSVYCASC 131
>gi|239751704 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 18 LLSFVWM-----PALLPVASRLLLLPRVLLTM---------ASGSPPTQPSPASDSGSGY 63
L+S VW+ P +LP + RLL P L+ + GS PT PS A G
Sbjct: 64 LVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQA----QGL 119
Query: 64 VPGSVSAAFVTC 75
PG S +C
Sbjct: 120 QPGRHSVYCASC 131
>gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo
sapiens]
Length = 168
Score = 28.5 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 17 LLLSFVWMPALLPVASRLLLLPRVLL-TMASGSPPTQPSPAS 57
L++SF ++ + + + L++LPRV+L +AS PPT S ++
Sbjct: 109 LIISFNFLLFIYFIETDLIMLPRVILDLLASSDPPTLVSQSA 150
>gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo
sapiens]
Length = 139
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 18 LLSFVWM-----PALLPVASRLLLLPRVLLTM---------ASGSPPTQPSPASDSGSGY 63
L+S VW+ P +LP + RLL P L+ + GS PT PS A G
Sbjct: 64 LVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQA----QGL 119
Query: 64 VPGSVSAAFVTC 75
PG S +C
Sbjct: 120 QPGRHSVYCASC 131
>gi|239741478 PREDICTED: hypothetical protein XP_002342228 [Homo
sapiens]
Length = 168
Score = 28.5 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 17 LLLSFVWMPALLPVASRLLLLPRVLL-TMASGSPPTQPSPAS 57
L++SF ++ + + + L++LPRV+L +AS PPT S ++
Sbjct: 109 LIISFNFLLFIYFIETDLIMLPRVILDLLASSDPPTLVSQSA 150
>gi|113722133 senataxin [Homo sapiens]
Length = 2677
Score = 28.5 bits (62), Expect = 3.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 27 LLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKEIAR 86
L PV R L P + GS P P+S SG+ SV+A+ P++ +KEI
Sbjct: 2465 LKPVLQRSLTHPPTIAP--EGSRPQGGLPSSKLDSGFAKTSVAASLYHTPSD--SKEITL 2520
Query: 87 AVVEK 91
V K
Sbjct: 2521 TVTSK 2525
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 28.5 bits (62), Expect = 3.2
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 43 TMASGSPPTQPSPASDS------GSGYVPGSV--SAAFVTCPNEKVAKEIARAVVEKRLA 94
T GSPP +P P + G G GS S F++ A + +
Sbjct: 129 TSPGGSPPARPIPGQSAAPTLAGGGGGAAGSTPGSPVFLSAAAGSTAGSLRELATSRTAP 188
Query: 95 ACVN--LIPQITSIYEWKGK 112
A N L+P ++Y ++GK
Sbjct: 189 AAKNPCLLPYGKALYSYEGK 208
>gi|225543215 antigen identified by monoclonal antibody Ki-67
isoform 2 [Homo sapiens]
Length = 2896
Score = 27.7 bits (60), Expect = 5.5
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 74 TCPNEKVAKEIARAVVEKRLAACVNLIPQI-TSIYEWKGKIEEDSEVLMMIKT 125
T ++ + I +A VE L AC NL+P +++ K + E+ ++++ + T
Sbjct: 903 TSTKQRPKRSIRKADVEGELLACRNLMPSAGKAMHTPKPSVGEEKDIIIFVGT 955
>gi|103472005 antigen identified by monoclonal antibody Ki-67 isoform
1 [Homo sapiens]
Length = 3256
Score = 27.7 bits (60), Expect = 5.5
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 74 TCPNEKVAKEIARAVVEKRLAACVNLIPQI-TSIYEWKGKIEEDSEVLMMIKT 125
T ++ + I +A VE L AC NL+P +++ K + E+ ++++ + T
Sbjct: 1263 TSTKQRPKRSIRKADVEGELLACRNLMPSAGKAMHTPKPSVGEEKDIIIFVGT 1315
>gi|223941808 N-glycanase 1 isoform 4 [Homo sapiens]
Length = 558
Score = 27.7 bits (60), Expect = 5.5
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 36 LLPRVLLTMASGSPPTQPSPASDSG--SGYVPGSVSAA----------FVTCPNEKVAKE 83
LL R+++ + P P P G SG V V+ F+ C NEK++K+
Sbjct: 433 LLQRIIVELVEFISPKTPKPGELGGRISGSVAWRVARGEMGLQRKETLFIPCENEKISKQ 492
Query: 84 --IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVH 141
+ +V+ R N +I W+ + + + ++T ++ T + +
Sbjct: 493 LHLCYNIVKDRYVRVSN---NNQTISGWENGVWKMESIFRKVETDWHMITVFTPMLIFLV 549
Query: 142 PYEV 145
P ++
Sbjct: 550 PLKL 553
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 33 RLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
RLLL PR + + SPP +P+ S G P + + V P
Sbjct: 90 RLLLAPRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAP 133
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 33 RLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
RLLL PR + + SPP +P+ S G P + + V P
Sbjct: 90 RLLLAPRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAP 133
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 33 RLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCP 76
RLLL PR + + SPP +P+ S G P + + V P
Sbjct: 101 RLLLAPRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAP 144
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 27.7 bits (60), Expect = 5.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 20 SFVWMPALLPVASRLLLLPRVLLTMASGSPP-TQPSPASDSGSGYVPGSVSAAFVTCPNE 78
S V PA L ++ L ++ L + S P T PSP + + P S NE
Sbjct: 161 SGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSI-------NE 213
Query: 79 KVAKEIARAVVEKRLA 94
+ A E RA+ EKR A
Sbjct: 214 EDADEANRAIGEKRAA 229
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 27.7 bits (60), Expect = 5.5
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 20 SFVWMPALLPVASRLLLLPRVLLTMASGSPP-TQPSPASDSGSGYVPGSVSAAFVTCPNE 78
S V PA L ++ L ++ L + S P T PSP + + P S NE
Sbjct: 166 SGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSI-------NE 218
Query: 79 KVAKEIARAVVEKRLA 94
+ A E RA+ EKR A
Sbjct: 219 EDADEANRAIGEKRAA 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,722,979
Number of Sequences: 37866
Number of extensions: 289328
Number of successful extensions: 1622
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 56
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.