Guide to the Human Genome
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Name: SPIB Sequence: fasta or formatted (262aa) NCBI GI: 61888836
Description:

Spi-B transcription factor (Spi-1/PU.1 related)

Referenced in:

Ets Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         32           4
 C cysteine            1.5          4           1
 D aspartate           5.3         14           1
 E glutamate           7.3         19           3
 F phenylalanine       3.4          9           1
 G glycine             6.5         17           1
 H histidine           1.5          4           1
 I isoleucine          0.4          1           1
 K lysine              5.0         13           2
 L leucine            11.5         30           2
 M methionine          1.1          3           1
 N asparagine          1.5          4           1
 P proline            10.7         28           2
 Q glutamine           3.8         10           2
 R arginine            5.3         14           2
 S serine              7.6         20           2
 T threonine           3.8         10           1
 V valine              4.6         12           1
 W tryptophan          1.9          5           2
 Y tyrosine            5.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Spi-B transcription factor (Spi-1/PU.1 related) [Hom... 
SPI1                  0.288   hematopoietic transcription factor PU.1 isoform 2 [...
SPI1                  0.288   hematopoietic transcription factor PU.1 isoform 1 [...
SPIC                  0.178   Spi-C transcription factor (Spi-1/PU.1 related) [Hom...
GABPA                 0.083   GA binding protein transcription factor, alpha subun...
ERG                   0.066   ets-related isoform 4 
ERG                   0.066   ets-related isoform 2 
ERG                   0.066   ets-related isoform 1 
ERG                   0.066   ets-related isoform 3 
ELF5                  0.064   E74-like factor 5 ESE-2a 
ELF5                  0.064   E74-like factor 5 ESE-2b 
ETV1                  0.062   ets variant gene 1 isoform f 
ETV1                  0.062   ets variant gene 1 isoform e 
ETV1                  0.062   ets variant gene 1 isoform d 
ETV1                  0.062   ets variant gene 1 isoform c 
ETV1                  0.062   ets variant gene 1 isoform c 
ETV1                  0.062   ets variant gene 1 isoform a 
ETV1                  0.058   ets variant gene 1 isoform b 
ETS1                  0.056   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS1                  0.056   v-ets erythroblastosis virus E26 oncogene homolog 1 i...
ETS1                  0.056   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS2                  0.054   v-ets erythroblastosis virus E26 oncogene homolog 2 [...
FEV                   0.054   FEV (ETS oncogene family) 
FLI1                  0.052   Friend leukemia virus integration 1 
ETV3                  0.052   ets variant gene 3 isoform 1 
ETV3                  0.052   ets variant gene 3 isoform 2 
ELF3                  0.052   E74-like factor 3 (ets domain transcription factor,...
ELF3                  0.052   E74-like factor 3 (ets domain transcription factor,...
ELF4                  0.052   E74-like factor 4 
ELF4                  0.052   E74-like factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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