Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ETV1 Sequence: fasta or formatted (454aa) NCBI GI: 253683427
Description:

ets variant gene 1 isoform b

Referenced in:

Ets Family

Other entries for this name:
alt prot [459aa] ets variant gene 1 isoform c
alt prot [459aa] ets variant gene 1 isoform c
alt prot [437aa] ets variant gene 1 isoform d
alt prot [419aa] ets variant gene 1 isoform e
alt prot [374aa] ets variant gene 1 isoform f
alt prot [477aa] ets variant gene 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         21           2
 C cysteine            2.2         10           2
 D aspartate           5.9         27           2
 E glutamate           7.5         34           2
 F phenylalanine       5.3         24           1
 G glycine             4.8         22           2
 H histidine           3.1         14           2
 I isoleucine          2.6         12           1
 K lysine              4.8         22           2
 L leucine             5.7         26           2
 M methionine          4.0         18           1
 N asparagine          4.2         19           1
 P proline            11.5         52           3
 Q glutamine           6.4         29           2
 R arginine            5.9         27           2
 S serine              7.9         36           2
 T threonine           3.1         14           1
 V valine              4.2         19           2
 W tryptophan          0.9          4           1
 Y tyrosine            5.3         24           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ets variant gene 1 isoform b 
ETV1                  0.986   ets variant gene 1 isoform a 
ETV1                  0.934   ets variant gene 1 isoform c 
ETV1                  0.934   ets variant gene 1 isoform c 
ETV1                  0.855   ets variant gene 1 isoform d 
ETV1                  0.816   ets variant gene 1 isoform e 
ETV5                  0.599   ets variant gene 5 (ets-related molecule) 
ETV1                  0.576   ets variant gene 1 isoform f 
ETV4                  0.458   ets variant gene 4 (E1A enhancer binding protein, E...
ETV4                  0.458   ets variant gene 4 (E1A enhancer binding protein, E1...
ETS1                  0.112   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS1                  0.112   v-ets erythroblastosis virus E26 oncogene homolog 1 i...
ETS1                  0.112   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS2                  0.109   v-ets erythroblastosis virus E26 oncogene homolog 2 [...
ERG                   0.100   ets-related isoform 4 
ERG                   0.100   ets-related isoform 2 
ERG                   0.100   ets-related isoform 1 
ERG                   0.100   ets-related isoform 3 
ELK4                  0.099   ELK4 protein isoform b 
ELK4                  0.099   ELK4 protein isoform a 
FLI1                  0.097   Friend leukemia virus integration 1 
ELK1                  0.096   ELK1 protein 
ELK1                  0.096   ELK1 protein 
FEV                   0.094   FEV (ETS oncogene family) 
ELK3                  0.092   ELK3 protein 
GABPA                 0.091   GA binding protein transcription factor, alpha subun...
ETV2                  0.088   ets variant gene 2 
LOC390937             0.074   PREDICTED: similar to hCG2040171 
LOC390937             0.074   PREDICTED: similar to hCG2040171 
LOC390937             0.074   PREDICTED: similar to hCG2040171 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press