Search of human proteins with 6031203

Search of human proteins with 6031203

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
         (225 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]        462   e-131
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]        431   e-121
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]         233   1e-61
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]         197   8e-51
gi|24497589 aristaless related homeobox [Homo sapiens]                100   2e-21
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                       97   1e-20
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                       97   1e-20
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                     97   1e-20
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                 96   2e-20
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  96   2e-20
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  96   2e-20
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                  96   2e-20
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                  96   2e-20
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                   96   2e-20
gi|7706659 paired related homeobox 2 [Homo sapiens]                    96   3e-20
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]    95   4e-20
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...    95   4e-20
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    95   6e-20
gi|122937484 dorsal root ganglia homeobox [Homo sapiens]               95   6e-20
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]             93   2e-19
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     93   2e-19
gi|46249382 paired-like homeobox 2a [Homo sapiens]                     93   2e-19
gi|14149760 orthopedia homeobox [Homo sapiens]                         93   2e-19
gi|122937321 UNC homeobox [Homo sapiens]                               92   5e-19
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]          90   1e-18
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]          90   1e-18
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...    89   4e-18
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom...    89   4e-18
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                  88   5e-18
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom...    88   7e-18

>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
          Length = 225

 Score =  462 bits (1190), Expect = e-131
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDIT 60
           MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDIT
Sbjct: 1   MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDIT 60

Query: 61  EGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRS 120
           EGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRS
Sbjct: 61  EGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRS 120

Query: 121 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMH 180
           RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMH
Sbjct: 121 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMH 180

Query: 181 KGVILGTANHLDACRVAPYVNMGALRMPFQQMEFCSCRPGWSIMA 225
           KGVILGTANHLDACRVAPYVNMGALRMPFQQMEFCSCRPGWSIMA
Sbjct: 181 KGVILGTANHLDACRVAPYVNMGALRMPFQQMEFCSCRPGWSIMA 225


>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
          Length = 292

 Score =  431 bits (1109), Expect = e-121
 Identities = 211/213 (99%), Positives = 213/213 (100%)

Query: 1   MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDIT 60
           MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDIT
Sbjct: 1   MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDIT 60

Query: 61  EGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRS 120
           EGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRS
Sbjct: 61  EGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRS 120

Query: 121 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMH 180
           RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMH
Sbjct: 121 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMH 180

Query: 181 KGVILGTANHLDACRVAPYVNMGALRMPFQQME 213
           KGVILGTANHLDACRVAPYVNMGALRMPFQQ++
Sbjct: 181 KGVILGTANHLDACRVAPYVNMGALRMPFQQVQ 213


>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
          Length = 331

 Score =  233 bits (594), Expect = 1e-61
 Identities = 135/264 (51%), Positives = 158/264 (59%), Gaps = 67/264 (25%)

Query: 1   MEELTAFVSKSFDQKSKD------------------------------------------ 18
           MEELTAFVSKSFDQK K+                                          
Sbjct: 1   MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG 60

Query: 19  ---GNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHV 75
              G GGGGGGGG             G+      G +         GGG  PV   ++  
Sbjct: 61  GGGGGGGGGGGGGG----------GGGVGGGGAGGGA---------GGGRSPV---RELD 98

Query: 76  DNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERL 135
               E+ +E G+ R+ E   E K+++ED K  +++GQTK+KQRRSRTNFTLEQLNELERL
Sbjct: 99  MGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERL 158

Query: 136 FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACR 195
           FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQ+HKGV++G A+  +ACR
Sbjct: 159 FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACR 218

Query: 196 VAPYVNMGALRMPFQQMEFCSCRP 219
           VAPYVN+GALRMPFQQ   C+  P
Sbjct: 219 VAPYVNVGALRMPFQQDSHCNVTP 242


>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
          Length = 190

 Score =  197 bits (500), Expect = 8e-51
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 108 DEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 167
           +++GQTK+KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN
Sbjct: 2   EDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 61

Query: 168 RRAKCRKQENQMHKGVILGTANHLDACRVAPYVNMGALRMPFQQME 213
           RRAKCRKQENQ+HKGV++G A+  +ACRVAPYVN+GALRMPFQQ++
Sbjct: 62  RRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQ 107


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 49/71 (69%), Positives = 55/71 (77%)

Query: 106 SEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWF 165
           S+ E+G  K KQRR RT FT  QL ELER F +THYPD F REEL+ RL L+EARVQVWF
Sbjct: 317 SDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWF 376

Query: 166 QNRRAKCRKQE 176
           QNRRAK RK+E
Sbjct: 377 QNRRAKWRKRE 387


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 59/126 (46%), Positives = 74/126 (58%), Gaps = 10/126 (7%)

Query: 72  KDHVDNDKEKLKEFGTARVA---EGIYECKEKREDVKSEDE---DGQTKLKQRRSRTNFT 125
           K   +++ +K ++ G  +     +GI   K  R D  S+ E   D   K KQRRSRT FT
Sbjct: 166 KKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFT 225

Query: 126 LEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVIL 185
            EQL ELE+ F+ THYPD + REEL+QR  L+EARVQVWF NRRA+ RKQ         L
Sbjct: 226 AEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQ----L 281

Query: 186 GTANHL 191
              NHL
Sbjct: 282 AAFNHL 287


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 59/126 (46%), Positives = 74/126 (58%), Gaps = 10/126 (7%)

Query: 72  KDHVDNDKEKLKEFGTARVA---EGIYECKEKREDVKSEDE---DGQTKLKQRRSRTNFT 125
           K   +++ +K ++ G  +     +GI   K  R D  S+ E   D   K KQRRSRT FT
Sbjct: 164 KKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFT 223

Query: 126 LEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVIL 185
            EQL ELE+ F+ THYPD + REEL+QR  L+EARVQVWF NRRA+ RKQ         L
Sbjct: 224 AEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQ----L 279

Query: 186 GTANHL 191
              NHL
Sbjct: 280 AAFNHL 285


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 59/126 (46%), Positives = 74/126 (58%), Gaps = 10/126 (7%)

Query: 72  KDHVDNDKEKLKEFGTARVA---EGIYECKEKREDVKSEDE---DGQTKLKQRRSRTNFT 125
           K   +++ +K ++ G  +     +GI   K  R D  S+ E   D   K KQRRSRT FT
Sbjct: 166 KKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFT 225

Query: 126 LEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVIL 185
            EQL ELE+ F+ THYPD + REEL+QR  L+EARVQVWF NRRA+ RKQ         L
Sbjct: 226 AEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQ----L 281

Query: 186 GTANHL 191
              NHL
Sbjct: 282 AAFNHL 287


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           ++  D+ SE  D   K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR  L+E
Sbjct: 201 DEGSDIDSEP-DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 259

Query: 159 ARVQVWFQNRRAKCRKQ 175
           ARVQVWF NRRA+ RKQ
Sbjct: 260 ARVQVWFSNRRARWRKQ 276


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           ++  D+ SE  D   K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR  L+E
Sbjct: 202 DEGSDIDSEP-DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 260

Query: 159 ARVQVWFQNRRAKCRKQ 175
           ARVQVWF NRRA+ RKQ
Sbjct: 261 ARVQVWFSNRRARWRKQ 277


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           ++  D+ SE  D   K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR  L+E
Sbjct: 202 DEGSDIDSEP-DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 260

Query: 159 ARVQVWFQNRRAKCRKQ 175
           ARVQVWF NRRA+ RKQ
Sbjct: 261 ARVQVWFSNRRARWRKQ 277


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           ++  D+ SE  D   K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR  L+E
Sbjct: 202 DEGSDIDSEP-DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 260

Query: 159 ARVQVWFQNRRAKCRKQ 175
           ARVQVWF NRRA+ RKQ
Sbjct: 261 ARVQVWFSNRRARWRKQ 277


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           ++  D+ SE  D   K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR  L+E
Sbjct: 202 DEGSDIDSEP-DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 260

Query: 159 ARVQVWFQNRRAKCRKQ 175
           ARVQVWF NRRA+ RKQ
Sbjct: 261 ARVQVWFSNRRARWRKQ 277


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           ++  D+ SE  D   K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR  L+E
Sbjct: 202 DEGSDIDSEP-DLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 260

Query: 159 ARVQVWFQNRRAKCRKQ 175
           ARVQVWF NRRA+ RKQ
Sbjct: 261 ARVQVWFSNRRARWRKQ 277


>gi|7706659 paired related homeobox 2 [Homo sapiens]
          Length = 253

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 45/66 (68%), Positives = 53/66 (80%)

Query: 114 KLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 173
           K KQRR+RT F   QL  LER+F+ THYPDAF+REEL++R+ LSEARVQVWFQNRRAK R
Sbjct: 101 KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFR 160

Query: 174 KQENQM 179
           + E  M
Sbjct: 161 RNERAM 166


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 12/153 (7%)

Query: 27  GGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHVDNDKEKLKEFG 86
           GG+ DS    + L++      +   S S L D+ E G        ++  +  +  L+  G
Sbjct: 16  GGRLDSPGNLDTLQA------KKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPG 69

Query: 87  TARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFM 146
              +  G    ++  + + SE++    K KQRR+RT F   QL  LER+F+ THYPDAF+
Sbjct: 70  ---LTSGSDTPQQDNDQLNSEEKK---KRKQRRNRTTFNSSQLQALERVFERTHYPDAFV 123

Query: 147 REELSQRLGLSEARVQVWFQNRRAKCRKQENQM 179
           RE+L++R+ L+EARVQVWFQNRRAK R+ E  M
Sbjct: 124 REDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 12/153 (7%)

Query: 27  GGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHVDNDKEKLKEFG 86
           GG+ DS    + L++      +   S S L D+ E G        ++  +  +  L+  G
Sbjct: 16  GGRLDSPGNLDTLQA------KKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPG 69

Query: 87  TARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFM 146
              +  G    ++  + + SE++    K KQRR+RT F   QL  LER+F+ THYPDAF+
Sbjct: 70  ---LTSGSDTPQQDNDQLNSEEKK---KRKQRRNRTTFNSSQLQALERVFERTHYPDAFV 123

Query: 147 REELSQRLGLSEARVQVWFQNRRAKCRKQENQM 179
           RE+L++R+ L+EARVQVWFQNRRAK R+ E  M
Sbjct: 124 REDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 94.7 bits (234), Expect = 6e-20
 Identities = 56/123 (45%), Positives = 72/123 (58%), Gaps = 2/123 (1%)

Query: 83  KEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYP 142
           KE G AR + G+       E   SE+E  Q K K RR+RT FT  QL+ELER F+++HYP
Sbjct: 104 KEPGEARPSPGLPVGPATGEAKLSEEE--QPKKKHRRNRTTFTTYQLHELERAFEKSHYP 161

Query: 143 DAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACRVAPYVNM 202
           D + REEL+ ++ L E RVQVWFQNRRAK R+QE      + L  +  L   R  P   +
Sbjct: 162 DVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATL 221

Query: 203 GAL 205
             L
Sbjct: 222 SPL 224


>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
          Length = 268

 Score = 94.7 bits (234), Expect = 6e-20
 Identities = 44/68 (64%), Positives = 54/68 (79%)

Query: 109 EDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 168
           +DG  + KQRR+RT FTL+QL  LE +F +THYPD F REEL+ ++ L+EARVQVWFQNR
Sbjct: 30  DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 89

Query: 169 RAKCRKQE 176
           RAK RK E
Sbjct: 90  RAKWRKTE 97


>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query: 112 QTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK 171
           Q + KQ+R RT FT  QLNELER F +THYPD FMREEL+ R+GL+E+RVQVWFQNRRAK
Sbjct: 99  QGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAK 158

Query: 172 CRKQE 176
            +K++
Sbjct: 159 WKKRK 163


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 45/63 (71%), Positives = 51/63 (80%)

Query: 114 KLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 173
           K KQRR RT FT  QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK R
Sbjct: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154

Query: 174 KQE 176
           KQE
Sbjct: 155 KQE 157


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 45/63 (71%), Positives = 51/63 (80%)

Query: 114 KLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 173
           K KQRR RT FT  QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK R
Sbjct: 87  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146

Query: 174 KQE 176
           KQE
Sbjct: 147 KQE 149


>gi|14149760 orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query: 112 QTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK 171
           Q + KQ+R RT FT  QLNELER F +THYPD FMREEL+ R+GL+E+RVQVWFQNRRAK
Sbjct: 99  QGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAK 158

Query: 172 CRKQE 176
            +K++
Sbjct: 159 WKKRK 163


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 91.7 bits (226), Expect = 5e-19
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 116 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ 175
           K+RR+RTNFT  QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQVWFQNRRAK RK+
Sbjct: 104 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKK 163

Query: 176 EN 177
           EN
Sbjct: 164 EN 165


>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
          Length = 289

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 42/70 (60%), Positives = 52/70 (74%)

Query: 113 TKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKC 172
           T  KQRR RT FT  QL+ LE LF +T YPD FMREE++ ++ L E+RVQVWF+NRRAKC
Sbjct: 34  TPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 93

Query: 173 RKQENQMHKG 182
           R+Q+ Q   G
Sbjct: 94  RQQQQQQQNG 103


>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
          Length = 297

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 42/70 (60%), Positives = 52/70 (74%)

Query: 113 TKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKC 172
           T  KQRR RT FT  QL+ LE LF +T YPD FMREE++ ++ L E+RVQVWF+NRRAKC
Sbjct: 42  TPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 101

Query: 173 RKQENQMHKG 182
           R+Q+ Q   G
Sbjct: 102 RQQQQQQQNG 111


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 114 KLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 173
           K K RR+RT FT  QL++LER F+ +HYPD + REEL+ ++ L E RVQVWFQNRRAK R
Sbjct: 24  KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83

Query: 174 KQENQMHKGVILGTANHLDACRVAPYVNMGALRMPFQ 210
           +QE ++  G     A  L      P+    A+ +P +
Sbjct: 84  RQE-RLESGSGAVAAPRLPEAPALPFARPPAMSLPLE 119


>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
           sapiens]
          Length = 377

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 44/83 (53%), Positives = 54/83 (65%)

Query: 99  EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
           E+  D+  E   G    KQRRSRT FT +QL  LE+ F +THYPD  MRE L+    L E
Sbjct: 48  ERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPE 107

Query: 159 ARVQVWFQNRRAKCRKQENQMHK 181
           ARVQVWF+NRRAK RK++  + K
Sbjct: 108 ARVQVWFKNRRAKFRKKQRSLQK 130


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 4/75 (5%)

Query: 102 EDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARV 161
           E   SE   G    K+RR+RT FT  QL ELE++F +THYPD + RE+L+ R  L+EARV
Sbjct: 203 EKADSESNKG----KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARV 258

Query: 162 QVWFQNRRAKCRKQE 176
           QVWFQNRRAK RK+E
Sbjct: 259 QVWFQNRRAKWRKRE 273


>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
           sapiens]
          Length = 382

 Score = 87.8 bits (216), Expect = 7e-18
 Identities = 43/80 (53%), Positives = 53/80 (66%)

Query: 102 EDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARV 161
           +D+  E   G    KQRRSRT FT +QL  LE+ F +THYPD  MRE L+    L EARV
Sbjct: 56  QDIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARV 115

Query: 162 QVWFQNRRAKCRKQENQMHK 181
           QVWF+NRRAK RK++  + K
Sbjct: 116 QVWFKNRRAKFRKKQRSLQK 135


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,823,983
Number of Sequences: 37866
Number of extensions: 401632
Number of successful extensions: 5473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 4250
Number of HSP's gapped (non-prelim): 1112
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.