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Search of human proteins with 59806343
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2
precursor [Homo sapiens]
(333 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precur... 694 0.0
gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precurs... 689 0.0
gi|156627559 tenomodulin [Homo sapiens] 197 1e-50
gi|149999608 surfactant protein C [Homo sapiens] 42 6e-04
gi|59858535 trefoil factor interactions(z) 1 [Homo sapiens] 35 0.12
gi|38348292 coiled-coil domain containing 84 [Homo sapiens] 33 0.27
gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo s... 32 0.79
gi|226437579 NAC alpha domain containing [Homo sapiens] 31 1.8
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 1.8
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 1.8
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 1.8
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 1.8
gi|214832565 hypothetical protein LOC80304 isoform 2 [Homo sapiens] 31 1.8
gi|13376798 hypothetical protein LOC80304 isoform 1 [Homo sapiens] 31 1.8
gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens] 31 1.8
gi|94538357 18 kDa antrum mucosa protein [Homo sapiens] 30 3.0
gi|91208420 bassoon protein [Homo sapiens] 30 3.9
gi|215820619 zinc finger protein 646 [Homo sapiens] 30 3.9
gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo sap... 30 3.9
gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens] 29 5.1
gi|13540513 oxysterol binding protein 2 isoform a [Homo sapiens] 29 6.7
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 28 8.7
gi|93352554 GPR158-like 1 [Homo sapiens] 28 8.7
>gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precursor
[Homo sapiens]
Length = 333
Score = 694 bits (1790), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG 60
MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG
Sbjct: 1 MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG 60
Query: 61 AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI 120
AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI
Sbjct: 61 AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI 120
Query: 121 TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK 180
TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK
Sbjct: 121 TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK 180
Query: 181 DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGR 240
DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGR
Sbjct: 181 DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGR 240
Query: 241 LNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECRRSYTHCQKICEPLG 300
LNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECRRSYTHCQKICEPLG
Sbjct: 241 LNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECRRSYTHCQKICEPLG 300
Query: 301 GYYPWPYNYQGCRSACRVIMPCSWWVARILGMV 333
GYYPWPYNYQGCRSACRVIMPCSWWVARILGMV
Sbjct: 301 GYYPWPYNYQGCRSACRVIMPCSWWVARILGMV 333
>gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 689 bits (1778), Expect = 0.0
Identities = 333/334 (99%), Positives = 333/334 (99%), Gaps = 1/334 (0%)
Query: 1 MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG 60
MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG
Sbjct: 1 MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG 60
Query: 61 AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI 120
AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI
Sbjct: 61 AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI 120
Query: 121 TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK 180
TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK
Sbjct: 121 TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK 180
Query: 181 DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGR 240
DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGR
Sbjct: 181 DNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGR 240
Query: 241 LNNETRPSVQEDSQAFNPDNPYH-QEGESMTFDPRLDHEGICCIECRRSYTHCQKICEPL 299
LNNETRPSVQEDSQAFNPDNPYH QEGESMTFDPRLDHEGICCIECRRSYTHCQKICEPL
Sbjct: 241 LNNETRPSVQEDSQAFNPDNPYHQQEGESMTFDPRLDHEGICCIECRRSYTHCQKICEPL 300
Query: 300 GGYYPWPYNYQGCRSACRVIMPCSWWVARILGMV 333
GGYYPWPYNYQGCRSACRVIMPCSWWVARILGMV
Sbjct: 301 GGYYPWPYNYQGCRSACRVIMPCSWWVARILGMV 334
>gi|156627559 tenomodulin [Homo sapiens]
Length = 317
Score = 197 bits (500), Expect = 1e-50
Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 15/307 (4%)
Query: 32 KPSSPARLLKVGAVVLISGAVLLLFGAIGAFYFWKGSDSHIYNVHYTMSINGKLQDGSME 91
K + LK+ +V A+ L+ G+ +FW Y++ +T NG+ + ME
Sbjct: 21 KSKKICKSLKICGLVFGILALTLIVLFWGSKHFWPEVPKKAYDMEHTFYSNGEKKKIYME 80
Query: 92 IDAGNNLETFKMGSGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQS 151
ID E F+ G+G +E + V+DF+NG TGI F G +KC+IK Q+K IPE ++
Sbjct: 81 IDPVTRTEIFRSGNGTDETLEVHDFKNGYTGIYFVGLQKCFIKTQIKV-IPEFSEPEEEI 139
Query: 152 ISSKLEGKIMPVKYEENSLIWVAVDQPVKDNSFL-SSKVLELCGDLPIFWLKPTY--PKE 208
E + + + E S+IWV ++P+++ FL +SK+LE+C ++ ++W+ PT E
Sbjct: 140 D----ENEEITTTFFEQSVIWVPAEKPIENRDFLKNSKILEICDNVTMYWINPTLISVSE 195
Query: 209 IQRERREVVRKIVPTTTKRPHSGPRSNPG--AGRLNNETRPSVQEDSQAFNPDNPYHQEG 266
+Q E P K+ G N ++ E ++ S+ P N Y + G
Sbjct: 196 LQDFEEEGEDLHFPANEKK---GIEQNEQWVVPQVKVEKTRHARQASEEELPINDYTENG 252
Query: 267 ESMTFDPRLDHEGICCIECRRSYTHCQKICEPLGGYYPWPYNYQGCRSACRVIMPCSWWV 326
+ FDP LD G CCI CRR +C+++CEPL GYYP+PY YQG R CRVIMPC+WWV
Sbjct: 253 --IEFDPMLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCYQGGRVICRVIMPCNWWV 310
Query: 327 ARILGMV 333
AR+LG V
Sbjct: 311 ARMLGRV 317
>gi|149999608 surfactant protein C [Homo sapiens]
Length = 197
Score = 42.4 bits (98), Expect = 6e-04
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 14/199 (7%)
Query: 13 VGPDDVEFCSPPAYATLTVK----PSSPARLLKVGAVVLISGAVLLLFGAIGAFYFWKGS 68
VG +V SPP Y+ P P L ++ VV++ VL++ +GA
Sbjct: 3 VGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVV--VVLIVVVIVGALLMGLHM 60
Query: 69 DSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGITGIRFAGG 128
+ MSI + + +L T S + V D+Q + + A G
Sbjct: 61 SQKHTEMVLEMSIGAP--EAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPG 118
Query: 129 EKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPV------KDN 182
CYI IP + A+T++ + ++E + S + A + D
Sbjct: 119 TCCYIMKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDP 178
Query: 183 SFLSSKVLELCGDLPIFWL 201
+FL V LCG++P++++
Sbjct: 179 AFLGMAVSTLCGEVPLYYI 197
>gi|59858535 trefoil factor interactions(z) 1 [Homo sapiens]
Length = 184
Score = 34.7 bits (78), Expect = 0.12
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 67 GSDSHIYNVHYTMSI--NGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGITGIR 124
G SH Y V +S NG ++ ID N + +G+ + + D+++G R
Sbjct: 15 GIQSHGYEVFNIISPSNNGGNVQETVTIDNEKNTAIINIHAGSCSSTTIFDYKHGYIASR 74
Query: 125 FAGGEKCYIKAQVKARIPEVGAV-----TKQSISSKLEGKIMPVKYEENSLIWVAVDQPV 179
C+I IP + + KQ++ + K VKY ++ +
Sbjct: 75 VLSRRACFILKMDHQNIPPLNNLQWYIYEKQALDNMFSSKYTWVKYN-------PLESLI 127
Query: 180 KDNSF--LSSKVLELCGDLPIF 199
KD + L S + +LC +P++
Sbjct: 128 KDVDWFLLGSPIEKLCKHIPLY 149
>gi|38348292 coiled-coil domain containing 84 [Homo sapiens]
Length = 332
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 207 KEIQRERREVVRKIV-PTTTKRPHSG---PRSNPGAGRLNNETRPSVQEDSQAFNPDNP- 261
+E+++ R+EVVR ++ P P G PRS G +N++ S+Q+ S P P
Sbjct: 156 REVEQSRQEVVRSVLEPQAVPDPEEGSSAPRSWKG---MNSQVASSLQQPSNLDLPPAPE 212
Query: 262 --YHQEGESMTFDPRLDHEGI 280
+ + G S+TF D G+
Sbjct: 213 LDWMETGPSLTFIGHQDIPGV 233
>gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo
sapiens]
Length = 1977
Score = 32.0 bits (71), Expect = 0.79
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 243 NETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIE--CRRSYTHCQKICEPLG 300
++ R + S+ DNP EGE +P E C C R ++ CQ E
Sbjct: 1104 SKVRLNRSSSSECSTVDNPLPGEGEEAEAEPMNSDEPEACFTDGCVRRFSCCQVNIESGK 1163
Query: 301 GYYPWPYNYQGCRSACRVIMPCSWWVARILGMV 333
G W R C I+ SW+ + I+ M+
Sbjct: 1164 GKIWW-----NIRKTCYKIVEHSWFESFIVLMI 1191
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 PKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNP 261
PK + +++ +I+P P SGP+S G L + P QED + D+P
Sbjct: 1308 PKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGL---SAPEQQEDEDSLEEDSP 1360
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 PKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNP 261
PK + +++ +I+P P SGP+S G L + P QED + D+P
Sbjct: 1268 PKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGL---SAPEQQEDEDSLEEDSP 1320
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 PKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNP 261
PK + +++ +I+P P SGP+S G L + P QED + D+P
Sbjct: 1268 PKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGL---SAPEQQEDEDSLEEDSP 1320
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 PKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNP 261
PK + +++ +I+P P SGP+S G L + P QED + D+P
Sbjct: 1308 PKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGL---SAPEQQEDEDSLEEDSP 1360
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 206 PKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNP 261
PK + +++ +I+P P SGP+S G L + P QED + D+P
Sbjct: 1268 PKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGL---SAPEQQEDEDSLEEDSP 1320
>gi|214832565 hypothetical protein LOC80304 isoform 2 [Homo sapiens]
Length = 622
Score = 30.8 bits (68), Expect = 1.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 160 IMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPI 198
++ V++E++ +W P++ + +L+S+ E+ G LPI
Sbjct: 76 LLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPI 114
>gi|13376798 hypothetical protein LOC80304 isoform 1 [Homo sapiens]
Length = 721
Score = 30.8 bits (68), Expect = 1.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 160 IMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPI 198
++ V++E++ +W P++ + +L+S+ E+ G LPI
Sbjct: 76 LLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPI 114
>gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens]
Length = 267
Score = 30.8 bits (68), Expect = 1.8
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 40 LKVGAVVLISGAVLLLFGAIGAFYFWKGSDSHIYN--VHYTMSINGKLQ-----DGSMEI 92
L +G VVL+ G V F+ + + + + V Y S++ +++ + ++I
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 93 DAGNNLETFKMG----SGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVT 148
N E + G + A ++DFQ G+T +KCY+ ++ I
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYV-IELNTTIVLPPRNF 179
Query: 149 KQSISSKLEGKIMPVKY---EENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIFWLKPTY 205
+ + + G +P Y EE + V + V D L S + LC K TY
Sbjct: 180 WELLMNVKRGTYLPQTYIIQEE-----MVVTEHVSDKEALGSFIYHLCNG------KDTY 228
Query: 206 PKEIQRERREVVRK 219
+ RR + ++
Sbjct: 229 RLRRRATRRRINKR 242
>gi|94538357 18 kDa antrum mucosa protein [Homo sapiens]
Length = 199
Score = 30.0 bits (66), Expect = 3.0
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 89 SMEIDAGNNLETFKMGSGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVT 148
S+ ++ +N+ +G + ++ D+ NG R + C + K +P + ++
Sbjct: 53 SVSVNNEHNVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLD 112
Query: 149 KQSISSKLEGKIMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIF 199
KL+GK P L++ V D S + +C +P +
Sbjct: 113 ALVKEKKLQGK-GPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTY 162
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 227 RPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECR 286
RPHS P S P + PS E SQ + YH +S R H G ++ +
Sbjct: 3680 RPHSQPSSAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKK-GSRQAHSGPAALQSK 3738
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 29.6 bits (65), Expect = 3.9
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 240 RLNNETRPSVQEDSQAFNPDNPY------HQEGESMTFDPRLDHEGICCIECRRSYTH 291
R ++ R V E+ Q P P H+E E T LDH C EC R+Y H
Sbjct: 421 RAHHRPRQGVGENGQPSVPPAPLLLAETTHKEEEDPT--TTLDHRPYKCSECGRAYRH 476
>gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo
sapiens]
Length = 464
Score = 29.6 bits (65), Expect = 3.9
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 179 VKDNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRKIVPTTTK--RPHSGP-RSN 235
+ D++ L + V+ C + LK KE+ E+ I+P + K +P+SGP R+
Sbjct: 388 LSDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFTELTTNIIPGSNKVIKPNSGPSRAR 447
Query: 236 PGA 238
P A
Sbjct: 448 PSA 450
>gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens]
Length = 220
Score = 29.3 bits (64), Expect = 5.1
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 106 GAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKY 165
G + A ++DFQ G+T +KCY+ ++ I + + + G +P Y
Sbjct: 91 GGDPADIIHDFQRGLTAYHDISLDKCYV-IELNTTIVLPPRNFWELLMNVKRGTYLPQTY 149
Query: 166 ---EENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRK 219
EE + V + V D L S + LC K TY + RR + ++
Sbjct: 150 IIQEE-----MVVTEHVSDKEALGSFIYHLCNG------KDTYRLRRRATRRRINKR 195
>gi|13540513 oxysterol binding protein 2 isoform a [Homo sapiens]
Length = 916
Score = 28.9 bits (63), Expect = 6.7
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 50 GAVLLLFGAIGAFYFWKGSDSHIYNVHYTMSINGKL---QDGSMEI 92
GA+ L F A G Y W+ S S ++N+ I GKL Q G +EI
Sbjct: 664 GAIHLEFQASGNHYVWRKSTSTVHNI-----IVGKLWIDQSGDIEI 704
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 28.5 bits (62), Expect = 8.7
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 194 GDLPIFWLKPTYPKEIQ-RERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQED 252
G+L +L P P I R+ ++V +R GP + G + +ET P+ D
Sbjct: 2446 GELSPSFLNPPLPPSIDDRDLSTEEVRLVGRGGRRRVGGPGTTGGPCPVTDETPPTSASD 2505
Query: 253 SQAFNPDN---PYHQEGESMTFDPRLDHE 278
S + D+ P +E S+T + LD +
Sbjct: 2506 SGSSQSDSDVPPETEECPSITAEAALDSD 2534
>gi|93352554 GPR158-like 1 [Homo sapiens]
Length = 2367
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/79 (18%), Positives = 32/79 (40%)
Query: 200 WLKPTYPKEIQRERREVVRKIVPTTTKRPHSGPRSNPGAGRLNNETRPSVQEDSQAFNPD 259
+L+ TY + +RE R+ + + + +RP + P L+ P+ + +
Sbjct: 858 YLEETYRQAKEREERKKAKAAMASLVRRPSARRLERPRGAPLSAPPSPAKSSSVDSSHTS 917
Query: 260 NPYHQEGESMTFDPRLDHE 278
H+E P + H+
Sbjct: 918 GRLHEEARRRLPHPPIRHQ 936
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,951,692
Number of Sequences: 37866
Number of extensions: 665502
Number of successful extensions: 1740
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 26
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.