Guide to the Human Genome
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Name: C2orf44 Sequence: fasta or formatted (721aa) NCBI GI: 13376798
Description:

hypothetical protein LOC80304 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {622aa} hypothetical protein LOC80304 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         36           2
 C cysteine            2.9         21           2
 D aspartate           5.3         38           2
 E glutamate           4.9         35           3
 F phenylalanine       2.5         18           1
 G glycine             5.1         37           1
 H histidine           3.6         26           1
 I isoleucine          6.2         45           3
 K lysine              5.1         37           2
 L leucine            11.8         85           3
 M methionine          1.2          9           1
 N asparagine          3.5         25           1
 P proline             5.7         41           2
 Q glutamine           4.7         34           2
 R arginine            3.6         26           1
 S serine             11.1         80           3
 T threonine           7.4         53           2
 V valine              7.5         54           2
 W tryptophan          1.1          8           1
 Y tyrosine            1.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80304 isoform 1 
C2orf44               0.840   hypothetical protein LOC80304 isoform 2 
RIC8B                 0.006   resistance to inhibitors of cholinesterase 8 homolog...
ARG1                  0.006   arginase 1 
TMEM201               0.005   transmembrane protein 201 isoform 1 
VCAN                  0.005   versican isoform 1 
MKL1                  0.005   megakaryoblastic leukemia 1 protein 
CCDC88A               0.004   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.004   coiled-coil domain containing 88A isoform 1 
STK11IP               0.004   LKB1 interacting protein 
PTK2B                 0.004   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.004   PTK2B protein tyrosine kinase 2 beta isoform b [Homo...
PTK2B                 0.004   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.004   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
LECT1                 0.004   leukocyte cell derived chemotaxin 1 isoform 2 precur...
LECT1                 0.004   leukocyte cell derived chemotaxin 1 isoform 1 precurs...
BOC                   0.004   brother of CDO 
THAP1                 0.004   THAP domain containing, apoptosis associated protein ...
TJP3                  0.004   tight junction protein 3 
DNMBP                 0.004   dynamin binding protein 
LOC347475             0.004   hypothetical protein LOC347475 
MUC3A                 0.004   PREDICTED: mucin 3A, cell surface associated, parti...
LOC652164             0.004   PREDICTED: similar to phosphodiesterase 4D interact...
LOC100289289          0.004   PREDICTED: hypothetical protein XP_002343409 
PDE4DIP               0.004   phosphodiesterase 4D interacting protein isoform 1 ...
NBPF11                0.004   hypothetical protein LOC728912 
LOC200030             0.004   neuroblastoma breakpoint family, member 11-like [Ho...
GPR158                0.004   G protein-coupled receptor 158 
CEP57                 0.004   translokin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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