Guide to the Human Genome
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Name: TNMD Sequence: fasta or formatted (317aa) NCBI GI: 156627559
Description:

tenomodulin

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         10           1
 C cysteine            4.4         14           2
 D aspartate           4.1         13           1
 E glutamate          12.0         38           3
 F phenylalanine       5.0         16           2
 G glycine             5.7         18           2
 H histidine           1.9          6           1
 I isoleucine          8.2         26           1
 K lysine              7.3         23           3
 L leucine             6.0         19           2
 M methionine          2.2          7           1
 N asparagine          5.4         17           1
 P proline             5.7         18           2
 Q glutamine           2.8          9           1
 R arginine            4.7         15           2
 S serine              3.5         11           1
 T threonine           4.7         15           3
 V valine              6.3         20           2
 W tryptophan          2.2          7           2
 Y tyrosine            4.7         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tenomodulin 
LECT1                 0.264   leukocyte cell derived chemotaxin 1 isoform 2 precur...
LECT1                 0.260   leukocyte cell derived chemotaxin 1 isoform 1 precurs...
GKN2                  0.022   trefoil factor interactions(z) 1 
RIBC2                 0.022   RIB43A domain with coiled-coils 2 
C1orf114              0.014   hypothetical protein LOC57821 
MPP5                  0.012   membrane protein, palmitoylated 5 
NTNG1                 0.011   netrin G1 isoform 2 
NTNG1                 0.011   netrin G1 isoform 1 
NTNG1                 0.011   netrin G1 isoform 3 
AMY1B                 0.009   salivary amylase alpha 1B precursor 
AMY2A                 0.009   pancreatic amylase alpha 2A precursor 
RFWD2                 0.009   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.009   ring finger and WD repeat domain 2 isoform d24 [Homo...
AMY1A                 0.009   salivary amylase alpha 1A precursor 
AMY1A                 0.009   salivary amylase alpha 1A precursor 
AMY2B                 0.009   amylase, pancreatic, alpha-2B precursor 
AMY1C                 0.009   salivary amylase alpha 1C precursor 
PTPRJ                 0.008   protein tyrosine phosphatase, receptor type, J isof...
NTNG2                 0.008   netrin G2 
DOPEY2                0.006   pad-1-like 
RGS7                  0.006   regulator of G-protein signaling 7 
ARL13B                0.006   ADP-ribosylation factor-like 2-like 1 isoform 2 [Hom...
ARL13B                0.006   ADP-ribosylation factor-like 2-like 1 isoform 1 [Hom...
FAM153A               0.005   hypothetical protein LOC285596 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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