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Search of human proteins with 5901998
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5901998 Sm protein F [Homo sapiens]
(80 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5901998 Sm protein F [Homo sapiens] 162 5e-41
gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo s... 75 1e-14
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 43 5e-05
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 40 5e-04
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 37 0.003
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 37 0.003
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 37 0.003
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ... 35 0.017
gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens] 34 0.022
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 30 0.54
gi|7657315 Lsm3 protein [Homo sapiens] 29 0.71
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 28 1.2
gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo sa... 27 4.6
gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo s... 27 4.6
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 27 4.6
gi|89363047 death-associated protein kinase 1 [Homo sapiens] 26 7.8
gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo ... 26 7.8
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 26 7.8
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 26 7.8
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 26 7.8
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 26 7.8
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 26 7.8
>gi|5901998 Sm protein F [Homo sapiens]
Length = 80
Score = 162 bits (410), Expect = 5e-41
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 61 GDAFIRGNNVLYISTQKRRM 80
GDAFIRGNNVLYISTQKRRM
Sbjct: 61 GDAFIRGNNVLYISTQKRRM 80
>gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo
sapiens]
Length = 86
Score = 75.1 bits (183), Expect = 1e-14
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
P FL + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 68 NNVLYI 73
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVL 71
LK+ + + + +KLN G +G+L D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 72 YISTQKR 78
+ +R
Sbjct: 69 MLEALER 75
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 39.7 bits (91), Expect = 5e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 22 VKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 73
+KLN G +G+L LD +MN+ +++ E +N G IRGN++L +
Sbjct: 7 LKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILML 58
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 37.0 bits (84), Expect = 0.003
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVL 71
LK+ + +KLN G +G+L D +MN+ +++ E + G IRGN+++
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSII 68
Query: 72 YI 73
+
Sbjct: 69 ML 70
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 37.0 bits (84), Expect = 0.003
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVL 71
LK+ + +KLN G +G+L D +MN+ +++ E + G IRGN+++
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSII 68
Query: 72 YI 73
+
Sbjct: 69 ML 70
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 37.0 bits (84), Expect = 0.003
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVL 71
LK+ + +KLN G +G+L D +MN+ +++ E + G IRGN+++
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSII 68
Query: 72 YI 73
+
Sbjct: 69 ML 70
>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
sapiens]
Length = 95
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY----GDAFIR 66
F K ++G+ VVV+L + + G L +D Y+NI L T+ V K + + FIR
Sbjct: 6 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL--TDISVTDPEKYPHMLSVKNCFIR 63
Query: 67 GNNVLYI 73
G+ V Y+
Sbjct: 64 GSVVRYV 70
>gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
Length = 139
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
P LK P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 67 GNNVLYI 73
G+ + Y+
Sbjct: 63 GSTIKYL 69
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNV 70
FL ++ V ++L +G G + +D MN L+ + + + + IRGNN+
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 71 LY 72
Y
Sbjct: 66 RY 67
>gi|7657315 Lsm3 protein [Homo sapiens]
Length = 102
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-------------EQTEEYV 52
+ P D ++ + + VK+ + + RG L D ++N+ L E+T E +
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 53 NGQLKNKYGDAFIRGNNVLYISTQKR 78
K F+RG+ V+ ++ R
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
Length = 103
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYV---NGQLK-----NKYGDA 63
L + I + + VK G + G+L D +N+ L+ T EY+ + Q K + G
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 64 FIRGNNVLYISTQ 76
RG +V+ I Q
Sbjct: 75 VCRGTSVVLICPQ 87
>gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo
sapiens]
Length = 395
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 14 QIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQL 56
+++ RP + SG +G ACL ++ ++T+E +GQL
Sbjct: 7 RVVSRPQRLGQGSGQGPKGSGACLHPLDSLEQKETQEQTSGQL 49
>gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo
sapiens]
Length = 462
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 14 QIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQL 56
+++ RP + SG +G ACL ++ ++T+E +GQL
Sbjct: 7 RVVSRPQRLGQGSGQGPKGSGACLHPLDSLEQKETQEQTSGQL 49
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 14 QIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQL 56
+++ RP + SG +G ACL ++ ++T+E +GQL
Sbjct: 7 RVVSRPQRLGQGSGQGPKGSGACLHPLDSLEQKETQEQTSGQL 49
>gi|89363047 death-associated protein kinase 1 [Homo sapiens]
Length = 1430
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 34 LACLDGYMNIALEQTEEYVNGQLKNKYG 61
+AC DG M I + E N + NKYG
Sbjct: 583 VACKDGNMPIVVALCEANCNLDISNKYG 610
>gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo
sapiens]
Length = 126
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ-TEEYVNGQLKNKYGDAFIR 66
P L + G V + N+G YRG L + MN + T Y +G++ + +IR
Sbjct: 6 PIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVA-QLEQVYIR 64
Query: 67 GNNVLYI 73
G+ + ++
Sbjct: 65 GSKIRFL 71
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALE 46
FL ++G VK+ +G Y G+ L +A++
Sbjct: 126 FLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVD 161
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALE 46
FL ++G VK+ +G Y G+ L +A++
Sbjct: 126 FLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVD 161
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALE 46
FL ++G VK+ +G Y G+ L +A++
Sbjct: 126 FLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVD 161
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALE 46
FL ++G VK+ +G Y G+ L +A++
Sbjct: 126 FLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVD 161
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALE 46
FL ++G VK+ +G Y G+ L +A++
Sbjct: 126 FLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVD 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,651,850
Number of Sequences: 37866
Number of extensions: 87211
Number of successful extensions: 234
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 22
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.