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Search of human proteins with 5901884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
(222 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens] 440 e-124
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo... 215 3e-56
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 178 3e-45
gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Hom... 153 1e-37
gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens] 47 1e-05
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 44 1e-04
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 44 1e-04
gi|63054832 cytochrome b-561 [Homo sapiens] 42 4e-04
gi|63054830 cytochrome b-561 [Homo sapiens] 42 4e-04
gi|63054828 cytochrome b-561 [Homo sapiens] 42 4e-04
gi|241896889 cytochrome b, ascorbate dependent 3 isoform 2 [Homo... 40 0.002
gi|241896875 cytochrome b, ascorbate dependent 3 isoform 1 [Homo... 40 0.002
gi|241896864 cytochrome b, ascorbate dependent 3 isoform 2 [Homo... 40 0.002
gi|46485465 Numb-interacting protein [Homo sapiens] 32 0.33
gi|209862909 G protein-coupled receptor 175 isoform 1 [Homo sapi... 30 2.1
gi|217416358 G protein-coupled receptor 175 isoform 1 [Homo sapi... 30 2.1
gi|224922839 hypothetical protein LOC138311 [Homo sapiens] 29 3.7
gi|224586777 WD repeat domain 8 [Homo sapiens] 29 3.7
gi|163792198 latrophilin 3 precursor [Homo sapiens] 29 3.7
gi|31881740 solute carrier family 12 (potassium/chloride transpo... 28 4.8
gi|6912464 latrophilin 2 precursor [Homo sapiens] 28 4.8
gi|188497708 cytochrome b reductase 1 isoform 2 [Homo sapiens] 28 6.2
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 28 8.2
gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b p... 28 8.2
gi|115496700 RGS9 anchor protein [Homo sapiens] 28 8.2
>gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
Length = 222
Score = 440 bits (1132), Expect = e-124
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MALSAETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLM 60
MALSAETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLM
Sbjct: 1 MALSAETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLM 60
Query: 61 TEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLVTRH 120
TEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLVTRH
Sbjct: 61 TEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLVTRH 120
Query: 121 GQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCS 180
GQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCS
Sbjct: 121 GQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCS 180
Query: 181 LWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQP 222
LWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQP
Sbjct: 181 LWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQP 222
>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
sapiens]
Length = 229
Score = 215 bits (547), Expect = 3e-56
Identities = 111/214 (51%), Positives = 143/214 (66%)
Query: 8 ESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVF 67
E + R LR SG AHLVALGFTIF+ L+RPG+SLFSWHPV M+LAF M EA+L+F
Sbjct: 15 EPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTSLFSWHPVFMALAFCLCMAEAILLF 74
Query: 68 SPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLVTRHGQAGLLA 127
SPE SL SRK R R HW Q LA+LCA LGLG +I + + HLV+ H G L
Sbjct: 75 SPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALT 134
Query: 128 VLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCSLWFTASV 187
+L +Q G+ LL P+ +A+LKLYH T GLV YL+ + ++LLGM S+WF A +
Sbjct: 135 LLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLGMYSVWFQAQI 194
Query: 188 TGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQ 221
GAAWYL + PV +LVIM+Q+S +YL RK+++
Sbjct: 195 KGAAWYLCLALPVYPALVIMHQISRSYLPRKKME 228
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 178 bits (452), Expect = 3e-45
Identities = 104/236 (44%), Positives = 136/236 (57%), Gaps = 22/236 (9%)
Query: 8 ESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSS----------------LFSWHPVL 51
E + R LR SG AHLVALGFTIF+ L+RPG+ + P L
Sbjct: 15 EPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSEGGRARWVMPEIPAL 74
Query: 52 M------SLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVI 105
SL F M EA+L+FSPE SL SRK R R HW Q LA+LCA LGLG +I
Sbjct: 75 WEADAGGSLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFII 134
Query: 106 LHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLV 165
+ + HLV+ H G L +L +Q G+ LL P+ +A+LKLYH T GLV
Sbjct: 135 SSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLV 194
Query: 166 GYLLGSASLLLGMCSLWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQ 221
YL+ + ++LLGM S+WF A + GAAWYL + PV +LVIM+Q+S +YL RK+++
Sbjct: 195 VYLMATVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKME 250
>gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Homo
sapiens]
Length = 172
Score = 153 bits (387), Expect = 1e-37
Identities = 80/171 (46%), Positives = 108/171 (63%)
Query: 51 LMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQ 110
+ L F M EA+L+FSPE SL SRK R R HW Q LA+LCA LGLG +I + +
Sbjct: 1 MQPLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTR 60
Query: 111 LGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLG 170
HLV+ H G L +L +Q G+ LL P+ +A+LKLYH T GLV YL+
Sbjct: 61 SELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMA 120
Query: 171 SASLLLGMCSLWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQ 221
+ ++LLGM S+WF A + GAAWYL + PV +LVIM+Q+S +YL RK+++
Sbjct: 121 TVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKME 171
>gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]
Length = 286
Score = 47.0 bits (110), Expect = 1e-05
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 41 GSSL-FSWHPVLMSLAFSFLMTEALLVFS-PESSLLHSLSRKGRARCHWVLQLLALLCAL 98
GS+L F+WHPVLM F F+ A++V+ P + L K H L +A + A+
Sbjct: 42 GSALEFNWHPVLMVTGFVFIQGIAIIVYRLPWTWKCSKLLMKS---IHAGLNAVAAILAI 98
Query: 99 LGLGLVILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPL---AKL 155
+ + V + A++ + H GL+AV+ LQ G + LLP PL A L
Sbjct: 99 ISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQLLSGFSVF---LLPWAPLSLRAFL 155
Query: 156 KLYHATSGLVGYLLGSASLLLGM 178
H SG+V + A+ L+G+
Sbjct: 156 MPIHVYSGIVIFGTVIATALMGL 178
>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
sapiens]
Length = 128
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 8 ESHIYRALRTASGAAAHLVALGFTIFVAVLARPGS 42
E + R LR SG AHLVALGFTIF+ L+RPG+
Sbjct: 15 EPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 8 ESHIYRALRTASGAAAHLVALGFTIFVAVLARPGS 42
E + R LR SG AHLVALGFTIF+ L+RPG+
Sbjct: 15 EPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
>gi|63054832 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 42.0 bits (97), Expect = 4e-04
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 45 FSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLV 104
F+ HP+ M + FL ALLV+ + + +++ H +L + AL+ AL+GL V
Sbjct: 50 FNAHPLCMVIGLIFLQGNALLVYR----VFRNEAKRTTKVLHGLLHIFALVIALVGLVAV 105
Query: 105 ILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLY---HAT 161
+ + G A L + H G+L + +Q G L P + Y H
Sbjct: 106 FDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFF---LFPGASFSLRSRYRPQHIF 162
Query: 162 SGLVGYLLGSASLLLGM 178
G +LL + LLG+
Sbjct: 163 FGATIFLLSVGTALLGL 179
>gi|63054830 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 42.0 bits (97), Expect = 4e-04
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 45 FSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLV 104
F+ HP+ M + FL ALLV+ + + +++ H +L + AL+ AL+GL V
Sbjct: 50 FNAHPLCMVIGLIFLQGNALLVYR----VFRNEAKRTTKVLHGLLHIFALVIALVGLVAV 105
Query: 105 ILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLY---HAT 161
+ + G A L + H G+L + +Q G L P + Y H
Sbjct: 106 FDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFF---LFPGASFSLRSRYRPQHIF 162
Query: 162 SGLVGYLLGSASLLLGM 178
G +LL + LLG+
Sbjct: 163 FGATIFLLSVGTALLGL 179
>gi|63054828 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 42.0 bits (97), Expect = 4e-04
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 45 FSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLV 104
F+ HP+ M + FL ALLV+ + + +++ H +L + AL+ AL+GL V
Sbjct: 50 FNAHPLCMVIGLIFLQGNALLVYR----VFRNEAKRTTKVLHGLLHIFALVIALVGLVAV 105
Query: 105 ILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLY---HAT 161
+ + G A L + H G+L + +Q G L P + Y H
Sbjct: 106 FDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFF---LFPGASFSLRSRYRPQHIF 162
Query: 162 SGLVGYLLGSASLLLGM 178
G +LL + LLG+
Sbjct: 163 FGATIFLLSVGTALLGL 179
>gi|241896889 cytochrome b, ascorbate dependent 3 isoform 2 [Homo
sapiens]
Length = 242
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 44 LFSWHPVLMSLAFSFLMTEALLVFS-PESSLLHSLSRKGRARCHWVLQLLALLCALLGLG 102
+F+WHPVLM A LV+ P+S + L K H L L+A + ++GL
Sbjct: 43 MFNWHPVLMVAGMVVFYGGASLVYRLPQSWVGPKLPWK---LLHAALHLMAFVLTVVGLV 99
Query: 103 LVILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATS 162
V A+L + H G+ V Q G + W + LK H
Sbjct: 100 AVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFF 159
Query: 163 GLVGYLLGSASLLLGM 178
G L AS++ G+
Sbjct: 160 GAAILSLSIASVISGI 175
>gi|241896875 cytochrome b, ascorbate dependent 3 isoform 1 [Homo
sapiens]
Length = 259
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 44 LFSWHPVLMSLAFSFLMTEALLVFS-PESSLLHSLSRKGRARCHWVLQLLALLCALLGLG 102
+F+WHPVLM A LV+ P+S + L K H L L+A + ++GL
Sbjct: 60 MFNWHPVLMVAGMVVFYGGASLVYRLPQSWVGPKLPWK---LLHAALHLMAFVLTVVGLV 116
Query: 103 LVILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATS 162
V A+L + H G+ V Q G + W + LK H
Sbjct: 117 AVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFF 176
Query: 163 GLVGYLLGSASLLLGM 178
G L AS++ G+
Sbjct: 177 GAAILSLSIASVISGI 192
>gi|241896864 cytochrome b, ascorbate dependent 3 isoform 2 [Homo
sapiens]
Length = 242
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 44 LFSWHPVLMSLAFSFLMTEALLVFS-PESSLLHSLSRKGRARCHWVLQLLALLCALLGLG 102
+F+WHPVLM A LV+ P+S + L K H L L+A + ++GL
Sbjct: 43 MFNWHPVLMVAGMVVFYGGASLVYRLPQSWVGPKLPWK---LLHAALHLMAFVLTVVGLV 99
Query: 103 LVILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATS 162
V A+L + H G+ V Q G + W + LK H
Sbjct: 100 AVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFF 159
Query: 163 GLVGYLLGSASLLLGM 178
G L AS++ G+
Sbjct: 160 GAAILSLSIASVISGI 175
>gi|46485465 Numb-interacting protein [Homo sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.33
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 52 MSLAFSFLMTEALLVFSPESSL-----LH---SLSRKGRARCHWVLQLLALLCALLGLGL 103
M LA ALL FS +SL LH S+ W+ LLC LLGL +
Sbjct: 209 MLLATGIFQLLALLFFSMATSLTSPCPLHLGASVLHTHHGPAFWITLTTGLLCVLLGLAM 268
Query: 104 VILHKEQ 110
+ H+ Q
Sbjct: 269 AVAHRMQ 275
>gi|209862909 G protein-coupled receptor 175 isoform 1 [Homo
sapiens]
Length = 373
Score = 29.6 bits (65), Expect = 2.1
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 23 AHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGR 82
AHL A F I+ G F W L+S F FL+ +L+V P++ L +S R
Sbjct: 176 AHLSAEDFNIY-----GHGGRQF-W---LVSSCFFFLVY-SLVVILPKTPLKERISLPSR 225
Query: 83 ARCHWVLQLLALLCALLGLGLVIL 106
+ +LALL L GLG V+L
Sbjct: 226 RSFYVYAGILALLNLLQGLGSVLL 249
>gi|217416358 G protein-coupled receptor 175 isoform 1 [Homo
sapiens]
Length = 373
Score = 29.6 bits (65), Expect = 2.1
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 23 AHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGR 82
AHL A F I+ G F W L+S F FL+ +L+V P++ L +S R
Sbjct: 176 AHLSAEDFNIY-----GHGGRQF-W---LVSSCFFFLVY-SLVVILPKTPLKERISLPSR 225
Query: 83 ARCHWVLQLLALLCALLGLGLVIL 106
+ +LALL L GLG V+L
Sbjct: 226 RSFYVYAGILALLNLLQGLGSVLL 249
>gi|224922839 hypothetical protein LOC138311 [Homo sapiens]
Length = 431
Score = 28.9 bits (63), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 172 ASLLLGMCS-LWFTASVTGAAWYLAVLCPVLTSLV 205
AS LLG C L+ T V AW+ A L P+L L+
Sbjct: 218 ASRLLGYCGDLYLTEGVPHGAWHAAALPPLLRPLL 252
>gi|224586777 WD repeat domain 8 [Homo sapiens]
Length = 460
Score = 28.9 bits (63), Expect = 3.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 87 WVLQLLALLCALLGLGLVILHKEQLGKAHLVTRHGQAGLLAVLWA 131
W L +LCA+ GLV + + + H G AGL+A W+
Sbjct: 56 WSADSLFILCAMYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWS 100
>gi|163792198 latrophilin 3 precursor [Homo sapiens]
Length = 1469
Score = 28.9 bits (63), Expect = 3.7
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 31 TIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARC--HWV 88
T F+ P + + + + + +A + M + PES L +++ + WV
Sbjct: 1018 TYFIWSFIGPATLIIMLNVIFLGIAL-YKMFHHTAILKPESGCLDNINYEDNRPFIKSWV 1076
Query: 89 LQLLALLCALLGL----GLVILHKEQLGKAHLVT 118
+ +ALLC LLGL GL+ +++ + A+L T
Sbjct: 1077 IGAIALLC-LLGLTWAFGLMYINESTVIMAYLFT 1109
>gi|31881740 solute carrier family 12 (potassium/chloride
transporters), member 9 [Homo sapiens]
Length = 914
Score = 28.5 bits (62), Expect = 4.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 21 AAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLM 60
AA L L A RP SLFSWH L+ +A LM
Sbjct: 430 AAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLM 469
>gi|6912464 latrophilin 2 precursor [Homo sapiens]
Length = 1403
Score = 28.5 bits (62), Expect = 4.8
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 12/54 (22%)
Query: 69 PESSLLHSLSRKGRARCHWVLQLLALLCALLGL----GLVILHKEQLGKAHLVT 118
P+SS L ++ WVL ALLC LLGL GL+ +++E + A+L T
Sbjct: 1012 PDSSRLENIKS-------WVLGAFALLC-LLGLTWSFGLLFINEETIVMAYLFT 1057
>gi|188497708 cytochrome b reductase 1 isoform 2 [Homo sapiens]
Length = 157
Score = 28.1 bits (61), Expect = 6.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 41 GSSL-FSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVL 89
GS+L F+WHPVLM F F+ A F S+ + S + H L
Sbjct: 42 GSALEFNWHPVLMVTGFVFIQGIASFRFFSLSASMGSAFSPSISHAHTCL 91
>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
Length = 213
Score = 27.7 bits (60), Expect = 8.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 132 GLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLG 177
GL+ G G P L RWPL L L T GL+ S S LG
Sbjct: 9 GLEAPGEPG---PNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALG 51
>gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b
precursor [Homo sapiens]
Length = 84
Score = 27.7 bits (60), Expect = 8.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 132 GLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLG 177
GL+ G G P L RWPL L L T GL+ S S LG
Sbjct: 9 GLEAPGEPG---PNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALG 51
>gi|115496700 RGS9 anchor protein [Homo sapiens]
Length = 235
Score = 27.7 bits (60), Expect = 8.2
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 123 AGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLL 176
+G L +L A ++ + +G +P PR PL + + A+SG+ L + SL L
Sbjct: 83 SGCLDLLEADMRRALELGAAFPLHAPRRPLVRTGVAGASSGVAARALSTRSLRL 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,517,156
Number of Sequences: 37866
Number of extensions: 300108
Number of successful extensions: 1068
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 27
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.