Search of human proteins with 58294160

Search of human proteins with 58294160

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58294160 breast carcinoma amplified sequence 4 isoform a
[Homo sapiens]
         (211 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom...   420   e-118
gi|60498980 breast carcinoma amplified sequence 4 isoform b [Hom...   325   2e-89
gi|58294158 breast carcinoma amplified sequence 4 isoform c [Hom...   234   5e-62
gi|8922952 cappuccino [Homo sapiens]                                   97   8e-21
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi...    56   3e-08
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi...    56   3e-08
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]            56   3e-08
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ...    56   3e-08
gi|6005810 mitogen-activated protein kinase kinase kinase kinase...    56   3e-08
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ...    55   3e-08
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]        55   6e-08
gi|148839316 NIMA-related kinase 4 [Homo sapiens]                      54   1e-07
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]     54   1e-07
gi|170932471 hypothetical protein LOC79703 [Homo sapiens]              49   3e-06
gi|118442834 RPGRIP1-like isoform a [Homo sapiens]                     49   4e-06
gi|61969666 arginine-fifty homeobox [Homo sapiens]                     47   9e-06
gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor ...    46   3e-05
gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]       45   3e-05
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ...    45   4e-05
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa...    45   4e-05
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]                45   6e-05
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]                45   6e-05
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]      43   2e-04
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s...    42   4e-04
gi|60099474 tripartite motif-containing 61 [Homo sapiens]              42   5e-04
gi|94680985 cyclin J-like [Homo sapiens]                               41   6e-04
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]      41   8e-04
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]          40   0.001
gi|148236061 hypothetical protein LOC285501 [Homo sapiens]             40   0.001
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]            39   0.003

>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
           sapiens]
          Length = 211

 Score =  420 bits (1079), Expect = e-118
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
           MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE
Sbjct: 1   MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60

Query: 61  AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
           AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF
Sbjct: 61  AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120

Query: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPARCNLRLPG 180
           VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPARCNLRLPG
Sbjct: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPARCNLRLPG 180

Query: 181 SSDSPASASQVAGITEVTCTGARDVRAAHTV 211
           SSDSPASASQVAGITEVTCTGARDVRAAHTV
Sbjct: 181 SSDSPASASQVAGITEVTCTGARDVRAAHTV 211


>gi|60498980 breast carcinoma amplified sequence 4 isoform b [Homo
           sapiens]
          Length = 203

 Score =  325 bits (833), Expect = 2e-89
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
           MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE
Sbjct: 1   MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60

Query: 61  AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
           AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF
Sbjct: 61  AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120

Query: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRN 163
           VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRN
Sbjct: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRN 163


>gi|58294158 breast carcinoma amplified sequence 4 isoform c [Homo
           sapiens]
          Length = 158

 Score =  234 bits (596), Expect = 5e-62
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
           MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE
Sbjct: 1   MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60

Query: 61  AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE 118
           AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE
Sbjct: 61  AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE 118


>gi|8922952 cappuccino [Homo sapiens]
          Length = 217

 Score = 97.4 bits (241), Expect = 8e-21
 Identities = 49/121 (40%), Positives = 78/121 (64%), Gaps = 2/121 (1%)

Query: 42  MRSGARELALFLTPEPGA--EAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPV 99
           +R  A   A  L P  GA  E + ++ ++E +L R++EF  + D++R D+S ++ E +P 
Sbjct: 61  LRRAAAGYAACLLPGAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPR 120

Query: 100 LKAKLTEMRGIYAKVDRLEAFVKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLP 159
           + AK  EMR IY+++DRLEAFV+MVG  VA +E  V +AE + G FP+A ++ L +  +P
Sbjct: 121 IHAKAAEMRRIYSRIDRLEAFVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVP 180

Query: 160 S 160
           S
Sbjct: 181 S 181


>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
           sapiens]
          Length = 312

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITEV 197
           +EC+GTI A CNL LPGSSDSPAS+S+VAGIT +
Sbjct: 50  LECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83


>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
           sapiens]
          Length = 341

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITEV 197
           +EC+GTI A CNL LPGSSDSPAS+S+VAGIT +
Sbjct: 50  LECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83


>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194
           GL  +  +E SGTI ARCNLRL GSSDSPASASQVAG+
Sbjct: 7   GLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44


>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
           sapiens]
          Length = 261

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194
           GL  +  +E SGTI ARCNLRL GSSDSPASASQVAG+
Sbjct: 7   GLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44


>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
           isoform 2 [Homo sapiens]
          Length = 833

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 43/81 (53%), Positives = 49/81 (60%), Gaps = 12/81 (14%)

Query: 116 RLEAFVKMVGHHVAFLEAD-VLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPARC 174
           +L+AF K  G  V  L +D +LQ  RD    P    R LGS  L      ECSGTI   C
Sbjct: 762 QLQAFWKH-GVQVWALGSDQLLQELRD----PTLTFRLLGSPRL------ECSGTISPHC 810

Query: 175 NLRLPGSSDSPASASQVAGIT 195
           NL LPGSS+SPASAS+VAGIT
Sbjct: 811 NLLLPGSSNSPASASRVAGIT 831


>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
           sapiens]
          Length = 261

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194
           GL  +  +E SGTI ARCNLRL GSSDSPASASQVAG+
Sbjct: 7   GLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44


>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
          Length = 638

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 160 SFRNVECSGTIPARCNLRLPGSSDSPASASQVAGITE 196
           S   +ECSG I A C+L LPGSSDSPASASQ+AG T+
Sbjct: 5   SVTRLECSGAISAHCSLHLPGSSDSPASASQIAGTTD 41


>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
          Length = 841

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITEVTCTGARDVRAAHTV 211
           +ECSGTI A  NLRL GSSDSPASAS+VAGIT V C  A+D  A   +
Sbjct: 464 LECSGTILAHSNLRLLGSSDSPASASRVAGITGV-CHHAQDQVAGECI 510


>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
          Length = 475

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 26/36 (72%), Positives = 27/36 (75%)

Query: 160 SFRNVECSGTIPARCNLRLPGSSDSPASASQVAGIT 195
           S   +ECSG I A CNLRLPGS DSPASASQ AG T
Sbjct: 428 SVTRLECSGMILAHCNLRLPGSRDSPASASQAAGTT 463


>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
          Length = 677

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query: 165 ECSGTIPARCNLRLPGSSDSPASASQVAGITE 196
           ECSG + A CNL LPGSSDS AS  +VAGIT+
Sbjct: 116 ECSGAVSAHCNLHLPGSSDSHASVPRVAGITD 147


>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
          Length = 1315

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 23/30 (76%), Positives = 23/30 (76%)

Query: 166  CSGTIPARCNLRLPGSSDSPASASQVAGIT 195
            CS  I A CN RLPGSSD PASASQV GIT
Sbjct: 1108 CSSAISAHCNFRLPGSSDFPASASQVDGIT 1137


>gi|61969666 arginine-fifty homeobox [Homo sapiens]
          Length = 315

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 159 PSFR---NVECSGTIPARCNLRLPGSSDSPASASQVAGITEV 197
           PSF     +ECSGT+ A C+L LPGS+D P SAS+VA  T +
Sbjct: 34  PSFTLLSKLECSGTVSAYCSLNLPGSTDPPTSASRVAATTAI 75


>gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor
           [Homo sapiens]
          Length = 381

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 22/30 (73%), Positives = 24/30 (80%)

Query: 168 GTIPARCNLRLPGSSDSPASASQVAGITEV 197
           G I A CNLRLP S DSPASAS+VAGIT +
Sbjct: 342 GMISAHCNLRLPDSRDSPASASRVAGITGI 371


>gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]
          Length = 229

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/30 (76%), Positives = 25/30 (83%)

Query: 166 CSGTIPARCNLRLPGSSDSPASASQVAGIT 195
           C+G I A  NLRL GSSDSPASAS+VAGIT
Sbjct: 196 CNGVISAHHNLRLWGSSDSPASASRVAGIT 225


>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
           sapiens]
          Length = 511

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/35 (62%), Positives = 25/35 (71%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITEVT 198
           +ECSG I A CN  L GSS+SPA AS+VAGI   T
Sbjct: 144 LECSGKISAHCNPHLQGSSNSPAQASRVAGIYRYT 178


>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
           sapiens]
          Length = 296

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 26/41 (63%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 154 GSAGLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194
           GS  LP    +ECSG I ARCNL   GSSD P SASQVA I
Sbjct: 205 GSYSLP---RLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242


>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
          Length = 600

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 25/43 (58%), Positives = 27/43 (62%)

Query: 153 LGSAGLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGIT 195
           L   G  S   +E SGTI A CN RL GS+DS ASASQV G T
Sbjct: 23  LEKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65


>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
          Length = 619

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 25/43 (58%), Positives = 27/43 (62%)

Query: 153 LGSAGLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGIT 195
           L   G  S   +E SGTI A CN RL GS+DS ASASQV G T
Sbjct: 23  LEKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65


>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
          Length = 148

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 114 VDRLEAFVKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPAR 173
           VD++  F K+VG  +  ++    +AE +                L     +EC+G I A 
Sbjct: 41  VDKIGQFQKIVGGLIELVDQLAKEAENEK------------MKSLAVSPRLECTGAISAH 88

Query: 174 CNLRLPGSSDSPASASQVAGITEVTCT 200
           C L L  SSDSP S S+V G T   C+
Sbjct: 89  CKLCLSDSSDSPTSPSRVGGTTGHRCS 115


>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
           sapiens]
          Length = 1151

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITE 196
           +ECSGT+ A C+L+L  SS+ P SASQVAG  +
Sbjct: 444 LECSGTVIAHCSLKLLDSSNPPTSASQVAGTAD 476


>gi|60099474 tripartite motif-containing 61 [Homo sapiens]
          Length = 209

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 159 PSFRNVECSGTIPARCNLRLPGSSDSPASAS 189
           PS   +ECS TI A  NLRLPGSSDS AS S
Sbjct: 179 PSVTRLECSCTISAHFNLRLPGSSDSSASGS 209


>gi|94680985 cyclin J-like [Homo sapiens]
          Length = 435

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASA 188
           ++CSG I A CNL LPGSS+SPASA
Sbjct: 103 LKCSGMISAHCNLHLPGSSNSPASA 127


>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
          Length = 940

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 22/28 (78%), Positives = 22/28 (78%)

Query: 170 IPARCNLRLPGSSDSPASASQVAGITEV 197
           I A CNLRL  SSDS ASASQVAG TEV
Sbjct: 2   ISAHCNLRLLCSSDSSASASQVAGTTEV 29


>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
          Length = 629

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGIT 195
           GL  +  +ECS TI A C+L L  SS+ P S SQV G T
Sbjct: 585 GLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQVVGTT 623


>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
          Length = 109

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGIT-EVTCTGARDVRAAH 209
           +ECSG I A CNL L GS     SASQVAG T E T   AR +   H
Sbjct: 22  LECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCHH 68


>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITEV 197
           +E +G   A  N RLPGS DSPASASQVA I ++
Sbjct: 16  LEHNGMTSAHHNFRLPGSRDSPASASQVAEIIDL 49


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,890,254
Number of Sequences: 37866
Number of extensions: 438811
Number of successful extensions: 1453
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 89
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.