Guide to the Human Genome
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Name: C10orf120 Sequence: fasta or formatted (335aa) NCBI GI: 58218975
Description:

hypothetical protein LOC399814

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         21           2
 C cysteine            2.7          9           2
 D aspartate           4.8         16           2
 E glutamate           8.7         29           3
 F phenylalanine       3.6         12           1
 G glycine             3.3         11           2
 H histidine           2.4          8           1
 I isoleucine          5.4         18           1
 K lysine             10.4         35           3
 L leucine             8.1         27           2
 M methionine          3.3         11           1
 N asparagine          4.8         16           1
 P proline             5.4         18           1
 Q glutamine           4.2         14           1
 R arginine            8.7         29           2
 S serine              7.2         24           2
 T threonine           3.6         12           1
 V valine              3.0         10           2
 W tryptophan          1.2          4           1
 Y tyrosine            3.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC399814 
EME1                  0.012   essential meiotic endonuclease 1 homolog 1 
BRD4                  0.012   bromodomain-containing protein 4 isoform short 
BRD4                  0.012   bromodomain-containing protein 4 isoform long 
EPSTI1                0.012   epithelial stromal interaction 1 isoform 2 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 1 
MTDH                  0.011   metadherin 
SRRT                  0.009   arsenate resistance protein 2 isoform e 
SRRT                  0.009   arsenate resistance protein 2 isoform d 
SRRT                  0.009   arsenate resistance protein 2 isoform c 
SRRT                  0.009   arsenate resistance protein 2 isoform a 
MDN1                  0.009   MDN1, midasin homolog 
TNNT1                 0.008   troponin T1, skeletal, slow isoform a 
C1orf198              0.008   hypothetical protein LOC84886 isoform 3 
C1orf198              0.008   hypothetical protein LOC84886 isoform 2 
C1orf198              0.008   hypothetical protein LOC84886 isoform 1 
CCDC18                0.008   sarcoma antigen NY-SAR-41 
EPSTI1                0.008   epithelial stromal interaction 1 isoform 1 
CLASP2                0.008   CLIP-associating protein 2 
MYO10                 0.008   myosin X 
WBP11                 0.008   WW domain binding protein 11 
LOC100294088          0.006   PREDICTED: hypothetical protein, partial 
ZNF532                0.006   zinc finger protein 532 
KIAA1024              0.005   hypothetical protein LOC23251 
IQCB1                 0.005   IQ motif containing B1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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