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Search of human proteins with 57863255
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57863255 zinc finger, SWIM domain containing 3 [Homo
sapiens]
(696 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens] 1412 0.0
gi|60460881 zinc finger, SWIM-type containing 1 [Homo sapiens] 197 2e-50
gi|239757335 PREDICTED: chromosome 19 open reading frame 68 [Hom... 39 0.012
gi|239751835 PREDICTED: chromosome 19 open reading frame 68 [Hom... 39 0.012
gi|239746326 PREDICTED: hypothetical protein LOC374920 [Homo sap... 39 0.012
gi|221139761 zinc finger protein 853 [Homo sapiens] 36 0.14
gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens] 35 0.23
gi|110349719 titin isoform N2-A [Homo sapiens] 34 0.52
gi|9955970 ATP-binding cassette, sub-family C, member 3 isoform ... 33 0.89
gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens] 33 1.2
gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens] 33 1.2
gi|211971074 A kinase (PRKA) anchor protein 2 isoform 2 [Homo sa... 33 1.2
gi|51873058 A kinase (PRKA) anchor protein 2 isoform 1 [Homo sap... 33 1.2
gi|15529996 son of sevenless homolog 1 [Homo sapiens] 32 2.6
gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens] 32 2.6
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 31 3.4
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 31 3.4
gi|20149621 dihydroxyacetone kinase 2 [Homo sapiens] 31 4.4
gi|62388875 carboxypeptidase Z isoform 2 precursor [Homo sapiens] 31 4.4
gi|62388877 carboxypeptidase Z isoform 1 [Homo sapiens] 31 4.4
gi|169218211 PREDICTED: similar to plectin 1, partial [Homo sapi... 30 7.6
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 30 7.6
gi|224458301 family with sequence similarity 186, member A [Homo... 30 9.9
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 30 9.9
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 30 9.9
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 30 9.9
gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1... 30 9.9
>gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]
Length = 696
Score = 1412 bits (3655), Expect = 0.0
Identities = 696/696 (100%), Positives = 696/696 (100%)
Query: 1 MELGSCFKTYEDFKECFSAYKRENRCSFILRDCVSVRFHNLNHGTSIREDILYVQVKFVC 60
MELGSCFKTYEDFKECFSAYKRENRCSFILRDCVSVRFHNLNHGTSIREDILYVQVKFVC
Sbjct: 1 MELGSCFKTYEDFKECFSAYKRENRCSFILRDCVSVRFHNLNHGTSIREDILYVQVKFVC 60
Query: 61 IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSKVASPGGDTTGKSQK 120
IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSKVASPGGDTTGKSQK
Sbjct: 61 IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSKVASPGGDTTGKSQK 120
Query: 121 TMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGITPSDLAKIAKVMKN 180
TMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGITPSDLAKIAKVMKN
Sbjct: 121 TMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGITPSDLAKIAKVMKN 180
Query: 181 FLKVDEGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHRVENTQGHILYAFLVE 240
FLKVDEGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHRVENTQGHILYAFLVE
Sbjct: 181 FLKVDEGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHRVENTQGHILYAFLVE 240
Query: 241 NKERESRVVHFAVLKAETVTSVAKMLSIFTEFNSDWPKVKVVFVDPSFHYRAILQEIFPA 300
NKERESRVVHFAVLKAETVTSVAKMLSIFTEFNSDWPKVKVVFVDPSFHYRAILQEIFPA
Sbjct: 241 NKERESRVVHFAVLKAETVTSVAKMLSIFTEFNSDWPKVKVVFVDPSFHYRAILQEIFPA 300
Query: 301 ARILLSIYHTTRLLEKKLHRSSANPSFKRLMKEALREAVFVTSEASLKNLCQMSQAVLDE 360
ARILLSIYHTTRLLEKKLHRSSANPSFKRLMKEALREAVFVTSEASLKNLCQMSQAVLDE
Sbjct: 301 ARILLSIYHTTRLLEKKLHRSSANPSFKRLMKEALREAVFVTSEASLKNLCQMSQAVLDE 360
Query: 361 DLFNFLQAHWFTCELLWYMHVRKGLLACNTYMDSLDIVTSKVSSLFREQQSLLDCILCFV 420
DLFNFLQAHWFTCELLWYMHVRKGLLACNTYMDSLDIVTSKVSSLFREQQSLLDCILCFV
Sbjct: 361 DLFNFLQAHWFTCELLWYMHVRKGLLACNTYMDSLDIVTSKVSSLFREQQSLLDCILCFV 420
Query: 421 DYIDFFNTKGLKNLPTPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQ 480
DYIDFFNTKGLKNLPTPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQ
Sbjct: 421 DYIDFFNTKGLKNLPTPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQ 480
Query: 481 VQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSH 540
VQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSH
Sbjct: 481 VQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSH 540
Query: 541 QVSKDGCSCSCSFQQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQD 600
QVSKDGCSCSCSFQQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQD
Sbjct: 541 QVSKDGCSCSCSFQQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQD 600
Query: 601 RGMVPNTGQPEKQGRNDMIQDLSRELANLLMQTEGPELEERYSTLRKIVDIWAGPSQPSE 660
RGMVPNTGQPEKQGRNDMIQDLSRELANLLMQTEGPELEERYSTLRKIVDIWAGPSQPSE
Sbjct: 601 RGMVPNTGQPEKQGRNDMIQDLSRELANLLMQTEGPELEERYSTLRKIVDIWAGPSQPSE 660
Query: 661 LFQQPGDFKDVGRLPFLWGKQEEGEGFPPATAVMHY 696
LFQQPGDFKDVGRLPFLWGKQEEGEGFPPATAVMHY
Sbjct: 661 LFQQPGDFKDVGRLPFLWGKQEEGEGFPPATAVMHY 696
>gi|60460881 zinc finger, SWIM-type containing 1 [Homo sapiens]
Length = 485
Score = 197 bits (502), Expect = 2e-50
Identities = 139/505 (27%), Positives = 232/505 (45%), Gaps = 48/505 (9%)
Query: 165 GITPSDLAKIAKVMKNFLKVDEGS--MASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLL 222
GI + ++ +A M N L + + S M V + LD ++QS M +F FPE L
Sbjct: 21 GIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDTFNYQSCFMQSVFDHFPEILF 80
Query: 223 LHRVENTQGHILYAFLVENKERE-----SRVVHFAVLKAETVTSVAKMLSIFTEFNSDWP 277
+HR N +G +LY FLV+ + +R V+FA+ E +A+M +F +FN W
Sbjct: 81 IHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKEDTEGLAQMFQVFKKFNPAWE 140
Query: 278 KVKVVFVDPSFHYRAILQEIFPAARILLSIYHTTRLLEKKLHRSSANPSFKRLMKEALRE 337
+V + VDP F IL FP A +LLS +H + L+ K ++ S +RL+ +L+
Sbjct: 141 RVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAKFYQLSLERPVERLLLTSLQS 200
Query: 338 AVFVTSEASLKNLCQMSQAVLDEDLFNFLQAHWFTCELLWYMHVRKGLLACNTYMDSLDI 397
+ + +L+ L + + L +HW + +W H + + Y SL++
Sbjct: 201 TMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIWLAHRWRSRAESSHYFQSLEV 260
Query: 398 VTSKVSSLFREQQSLLDCILCFVDYIDFFNTKGLKNLPTPPPKLKRARPASMPLKSKKAF 457
T +S F S +G+ +L R + K+
Sbjct: 261 TTHILSQFFGTTPS---------------EKQGMASL-------FRYMQQNSADKANFNQ 298
Query: 458 GICGESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVV 517
G+C ++ + +T P++ +++ +S + S L+ + A +LC E VV
Sbjct: 299 GLCAQN--NHAPSDTIPESPKLEQLVESHIQHS-------LNAICTGPAAQLCLGELAVV 349
Query: 518 QNSTHLVDMAGSSVDVQLLEDSHQVS-KDGCSCSCSFQQWYHLPCRHILALLHTSQQPVG 576
Q STHL+ +++Q+LED+H+V + SCSC F Q +HLPCRHILA+L +Q +
Sbjct: 350 QKSTHLIGSGSEKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQ 409
Query: 577 EAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQGRNDMIQDLSRELANLLMQTEGP 636
M+ +W G + + E ++ + L+ E+ LL
Sbjct: 410 PDMLPAQWTA---------GCATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKE 460
Query: 637 ELEERYSTLRKIVDIWAGPSQPSEL 661
E E RYSTLR++ D W GP + +L
Sbjct: 461 EFERRYSTLRELADSWIGPYEQVQL 485
>gi|239757335 PREDICTED: chromosome 19 open reading frame 68 [Homo
sapiens]
Length = 578
Score = 39.3 bits (90), Expect = 0.012
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 50 DIL-YVQVKFVC--IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSK 106
D+L Y V+ VC +R S CPA+++++ + DRL ++E H H
Sbjct: 19 DVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACP 78
Query: 107 VASPGGDTTGKSQKTMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGI 166
+ G CL PV+ T K K V P+ + ++ K G+
Sbjct: 79 LEFAYYFRPGHLLANACL----PVRTTNK-----ISKQFVAPA-DVRRLLSYCKGRDHGV 128
Query: 167 TPSDLAKIAKVMKNFLKVD-EGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHR 225
+ V++ + D E + V D ++ + F +S+ L RFP LL+ R
Sbjct: 129 LDA-----LHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDR 183
Query: 226 VENTQG 231
+ QG
Sbjct: 184 LPGLQG 189
>gi|239751835 PREDICTED: chromosome 19 open reading frame 68 [Homo
sapiens]
Length = 578
Score = 39.3 bits (90), Expect = 0.012
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 50 DIL-YVQVKFVC--IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSK 106
D+L Y V+ VC +R S CPA+++++ + DRL ++E H H
Sbjct: 19 DVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACP 78
Query: 107 VASPGGDTTGKSQKTMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGI 166
+ G CL PV+ T K K V P+ + ++ K G+
Sbjct: 79 LEFAYYFRPGHLLANACL----PVRTTNK-----ISKQFVAPA-DVRRLLSYCKGRDHGV 128
Query: 167 TPSDLAKIAKVMKNFLKVD-EGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHR 225
+ V++ + D E + V D ++ + F +S+ L RFP LL+ R
Sbjct: 129 LDA-----LHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDR 183
Query: 226 VENTQG 231
+ QG
Sbjct: 184 LPGLQG 189
>gi|239746326 PREDICTED: hypothetical protein LOC374920 [Homo
sapiens]
Length = 578
Score = 39.3 bits (90), Expect = 0.012
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 50 DIL-YVQVKFVC--IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSK 106
D+L Y V+ VC +R S CPA+++++ + DRL ++E H H
Sbjct: 19 DVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACP 78
Query: 107 VASPGGDTTGKSQKTMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGI 166
+ G CL PV+ T K K V P+ + ++ K G+
Sbjct: 79 LEFAYYFRPGHLLANACL----PVRTTNK-----ISKQFVAPA-DVRRLLSYCKGRDHGV 128
Query: 167 TPSDLAKIAKVMKNFLKVD-EGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHR 225
+ V++ + D E + V D ++ + F +S+ L RFP LL+ R
Sbjct: 129 LDA-----LHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDR 183
Query: 226 VENTQG 231
+ QG
Sbjct: 184 LPGLQG 189
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 35.8 bits (81), Expect = 0.14
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Query: 462 ESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNE-------- 513
E S+ +E KP+ Q + QQQ Q P QV L Q +L + +
Sbjct: 136 EKHQSVHHQELKPELQLMHQQQQLQ--PQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQ 193
Query: 514 -WEVVQNSTHLVDMAGSSVDVQLLEDSHQVSKDGCSCSCSFQQWYHLPCRHILALLHTSQ 572
+ VQ L QLL+ Q+ + QQ L + L LL
Sbjct: 194 LQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQ-----QQQEQLQQQQQLLLLQQQG 248
Query: 573 QPVGEAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQGRNDMIQDLSRELANLLMQ 632
Q + + ++ Q + Q L +LQ + ++ Q ++Q + ++Q +L +Q
Sbjct: 249 QLQQQLLQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQQQQLQ 308
Query: 633 TEGPELEERYSTLRKIVDIWAGPSQPSELFQQ 664
E EE +++ + G Q EL QQ
Sbjct: 309 PPPLEPEEEEEVELELMPVDLGSEQ--ELEQQ 338
>gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens]
Length = 2002
Score = 35.0 bits (79), Expect = 0.23
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 438 PPKLKRARPASMPLKSKKAFGICG----ESLTSLPAEETKPDAQQVQVQQQSQVPPSQVG 493
P + K+ AS + + + G +S P ++ P QQ Q QQ Q Q
Sbjct: 1496 PSRTKQTENASQAKQLAELLRLSGPVMQQSQQPQPLQKQPPQPQQQQRPQQQQPHHPQTE 1555
Query: 494 MLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSHQVS 543
+++ SGS Y N NS+H D+ GS+ + S Q +
Sbjct: 1556 SVNSYSASGSTNPYMRRPNPVSPYPNSSHTSDIYGSTSPMNFYSTSSQAA 1605
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 33.9 bits (76), Expect = 0.52
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 485 SQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSHQVSK 544
S PP +V + Q + +K+ ++ S H++++ S V + +++V
Sbjct: 6482 SGTPPFEVVWVKDRKQVRNSKKFKITSKHFDT---SLHILNLEASDVGEYHCKATNEVGS 6538
Query: 545 DGCSCSCSFQQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQ 589
D CSCS F++ P R + L TS +G+A+ R + +Q
Sbjct: 6539 DTCSCSVKFKE----PPRFVKKLSDTSTL-IGDAVELRAIVEGFQ 6578
>gi|9955970 ATP-binding cassette, sub-family C, member 3 isoform 1
[Homo sapiens]
Length = 1527
Score = 33.1 bits (74), Expect = 0.89
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 82 LRYNERLDRLFISELNTQHIHGDSKVASPGGDTTGKSQKTMCLQRL 127
+RY LD L + +L+ H+HG KV G GKS T+CL R+
Sbjct: 1296 VRYRPGLD-LVLRDLSL-HVHGGEKVGIVGRTGAGKSSMTLCLFRI 1339
>gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens]
Length = 1090
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 478 QVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLE 537
Q Q+QQQ Q PPSQ L T S E A + + ++V T +D + + QL+E
Sbjct: 512 QKQLQQQQQQPPSQ---LCTAPASSHERASMIDKAKEDIV---TEQIDFSAARKQFQLME 565
Query: 538 DSHQVSKDGCS 548
+S Q G S
Sbjct: 566 NSRQAVAKGQS 576
>gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens]
Length = 1103
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 478 QVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLE 537
Q Q+QQQ Q PPSQ L T S E A + + ++V T +D + + QL+E
Sbjct: 512 QKQLQQQQQQPPSQ---LCTAPASSHERASMIDKAKEDIV---TEQIDFSAARKQFQLME 565
Query: 538 DSHQVSKDGCS 548
+S Q G S
Sbjct: 566 NSRQAVAKGQS 576
>gi|211971074 A kinase (PRKA) anchor protein 2 isoform 2 [Homo
sapiens]
Length = 859
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 478 QVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLE 537
Q Q+QQQ Q PPSQ L T S E A + + ++V T +D + + QL+E
Sbjct: 281 QKQLQQQQQQPPSQ---LCTAPASSHERASMIDKAKEDIV---TEQIDFSAARKQFQLME 334
Query: 538 DSHQVSKDGCS 548
+S Q G S
Sbjct: 335 NSRQAVAKGQS 345
>gi|51873058 A kinase (PRKA) anchor protein 2 isoform 1 [Homo
sapiens]
Length = 948
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 478 QVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLE 537
Q Q+QQQ Q PPSQ L T S E A + + ++V T +D + + QL+E
Sbjct: 370 QKQLQQQQQQPPSQ---LCTAPASSHERASMIDKAKEDIV---TEQIDFSAARKQFQLME 423
Query: 538 DSHQVSKDGCS 548
+S Q G S
Sbjct: 424 NSRQAVAKGQS 434
>gi|15529996 son of sevenless homolog 1 [Homo sapiens]
Length = 1333
Score = 31.6 bits (70), Expect = 2.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 428 TKGLKNLPTPPPKLKRARPASMPLKSKKAFGICGESLTSLPA 469
TKG +P PPP R RP S P +S + I + L S PA
Sbjct: 1141 TKGTDEVPVPPPVPPRRRPESAPAESSPS-KIMSKHLDSPPA 1181
>gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]
Length = 970
Score = 31.6 bits (70), Expect = 2.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 431 LKNLPTPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQVQQQSQVP 488
++N P+ PP L RPAS P K+ S LPA + +A ++ Q + P
Sbjct: 560 IRNAPSRPPSLPTPRPASQPRKAPVI-----SSTPKLPALAAREEASTSRLLQPPEAP 612
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 429 KGLKNLPTPPPKLKRARPASMPLKSKKAFGICG--ESLTSLPAEETKPDAQQVQ 480
+G + P PP K KR+ P + P ++ A G ++ T LPA ET +Q
Sbjct: 795 QGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTPIQ 848
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 429 KGLKNLPTPPPKLKRARPASMPLKSKKAFGICG--ESLTSLPAEETKPDAQQVQ 480
+G + P PP K KR+ P + P ++ A G ++ T LPA ET +Q
Sbjct: 790 QGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTPIQ 843
>gi|20149621 dihydroxyacetone kinase 2 [Homo sapiens]
Length = 575
Score = 30.8 bits (68), Expect = 4.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 447 ASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGMLDTLHQSGSEL 505
A+ PLK+K TSLPA DA +Q+ + P MLD+L +G EL
Sbjct: 458 AAQPLKAK----------TSLPAWSAAMDAGLEAMQKYGKAAPGDRTMLDSLWAAGQEL 506
>gi|62388875 carboxypeptidase Z isoform 2 precursor [Homo sapiens]
Length = 641
Score = 30.8 bits (68), Expect = 4.4
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 509 LCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSHQVSKD----GCSCSCSFQQ--WYHLPCR 562
L H WEVV+ S+ + + SV QLLE Q + D GC+ + W PCR
Sbjct: 54 LQHRSWEVVEASSEYILL---SVLHQLLEG--QCNPDLRLLGCAVLAPRCEGGWVRRPCR 108
Query: 563 HILALLHTSQQPVGEAM 579
HI L QP +A+
Sbjct: 109 HICEGLREVCQPAFDAI 125
>gi|62388877 carboxypeptidase Z isoform 1 [Homo sapiens]
Length = 652
Score = 30.8 bits (68), Expect = 4.4
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 509 LCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSHQVSKD----GCSCSCSFQQ--WYHLPCR 562
L H WEVV+ S+ + + SV QLLE Q + D GC+ + W PCR
Sbjct: 65 LQHRSWEVVEASSEYILL---SVLHQLLEG--QCNPDLRLLGCAVLAPRCEGGWVRRPCR 119
Query: 563 HILALLHTSQQPVGEAM 579
HI L QP +A+
Sbjct: 120 HICEGLREVCQPAFDAI 136
>gi|169218211 PREDICTED: similar to plectin 1, partial [Homo
sapiens]
Length = 1369
Score = 30.0 bits (66), Expect = 7.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 554 QQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQ 613
+Q+ HLP + A L ++PV M RR Q + GP G RG +P + ++
Sbjct: 79 RQYLHLPPEIVAASLQRVRRPVAMVMPARR-TPHVQAVQGPLGSPPKRGPLPT--EEQRL 135
Query: 614 GRNDMIQDLSRE 625
R ++++S E
Sbjct: 136 YRRKELEEVSPE 147
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.0 bits (66), Expect = 7.6
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 103 GDSKVASPGGDTTGKSQKTMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKP- 161
GD+ + PG +T + + QP P KD D EKS PS ++ +P
Sbjct: 306 GDAPFSEPGTTSTQRPSSPETATK-QPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPP 364
Query: 162 -------EQEGITPSDLA 172
E+ G +P LA
Sbjct: 365 APTPLLAERHGGSPQPLA 382
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 29.6 bits (65), Expect = 9.9
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 427 NTKGLKNLP--------TPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQ 478
N K L+NLP TPPP L+ + P ++P I G+ LT T AQ+
Sbjct: 1032 NLKTLENLPDEKEPISITPPPSLQYSLPGALP--------ISGQPLTKC-IHLTPQQAQE 1082
Query: 479 VQVQQQSQVPPSQVGMLDTLHQS 501
V + Q +Q G+ TL Q+
Sbjct: 1083 VGITLTPQQAQAQ-GITLTLQQA 1104
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 29.6 bits (65), Expect = 9.9
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 554 QQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQ 613
+Q+ HLP + A L ++PV M RR Q + GP G RG +P + ++
Sbjct: 83 RQYLHLPPEIVPASLQRVRRPVAMVMPARR-TPHVQAVQGPLGSPPKRGPLPT--EEQRV 139
Query: 614 GRNDMIQDLSRELANLLMQTE------GPE----LEERYSTLRKIVDIW 652
R ++++S E + T+ GPE +ER +K W
Sbjct: 140 YRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDERDRVQKKTFTKW 188
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.6 bits (65), Expect = 9.9
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 436 TPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGML 495
TP P L +PA + + A + L S P T P ++ + PP +VG +
Sbjct: 1488 TPQPAL--GQPAPLLPAAVGAVSLATSQLPSPPLGPTVPPQPPSALESDGEGPPPRVGFV 1545
Query: 496 DTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDV 533
D+ +S E L + E +++ AG+ V+V
Sbjct: 1546 DSTIKSLDEKLRTLLYQEHVPTSSAS-----AGTPVEV 1578
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 29.6 bits (65), Expect = 9.9
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 442 KRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGMLDTLHQS 501
+R + AS+ S++ G+ SL AE+ + Q +++ + Q ++ +D + +
Sbjct: 1032 QRQKLASLNSGSREQSGL----QASLEAEQEALEKDQERLEYEIQQLKQKIYEVDGVQKD 1087
Query: 502 G-SELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQL-------LEDSHQVSKDGCSCS 550
L K+ + V +HLV + + ++ + L+D H+V +GCS S
Sbjct: 1088 HHGTLEGKVASSSLPVSAEKSHLVPLMDARINAYIEEEVQRRLQDLHRVISEGCSTS 1144
>gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1
[Homo sapiens]
Length = 812
Score = 29.6 bits (65), Expect = 9.9
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 570 TSQQPVGEAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQGRNDMIQDLSRELANL 629
TSQQP+ AMV + Q+ Q P + Q + P P R+D+ + +
Sbjct: 504 TSQQPLRSAMVGQSQQQPPQQQPSPQPQQQVQPPQPQMAGPLVTQRDDVATQFGQMTLSR 563
Query: 630 LMQTEGPELEERYSTLRKIVDIWAGPSQPSELFQQP 665
E PE +GP PS L QP
Sbjct: 564 QSSGETPEPP-------------SGPVYPSSLMPQP 586
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,226,643
Number of Sequences: 37866
Number of extensions: 1239310
Number of successful extensions: 3704
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3681
Number of HSP's gapped (non-prelim): 44
length of query: 696
length of database: 18,247,518
effective HSP length: 109
effective length of query: 587
effective length of database: 14,120,124
effective search space: 8288512788
effective search space used: 8288512788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.