Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZSWIM1 Sequence: fasta or formatted (485aa) NCBI GI: 60460881
Description:

zinc finger, SWIM-type containing 1

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         39           2
 C cysteine            2.7         13           1
 D aspartate           3.1         15           1
 E glutamate           5.8         28           2
 F phenylalanine       4.9         24           2
 G glycine             3.7         18           1
 H histidine           4.3         21           1
 I isoleucine          4.3         21           1
 K lysine              4.3         21           2
 L leucine            13.6         66           3
 M methionine          2.7         13           1
 N asparagine          3.3         16           2
 P proline             6.2         30           2
 Q glutamine           6.8         33           2
 R arginine            4.3         21           2
 S serine              7.6         37           2
 T threonine           5.8         28           2
 V valine              4.1         20           2
 W tryptophan          1.9          9           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, SWIM-type containing 1 
ZSWIM3                0.178   zinc finger, SWIM domain containing 3 
MYH1                  0.017   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.012   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.012   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH8                  0.011   myosin, heavy chain 8, skeletal muscle, perinatal [...
KIAA0141              0.005   hypothetical protein LOC9812 
KIAA0141              0.005   hypothetical protein LOC9812 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press