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Search of human proteins with 5729999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729999 Ras-related GTP binding A [Homo sapiens]
(313 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729999 Ras-related GTP binding A [Homo sapiens] 625 e-179
gi|46249395 Ras-related GTP binding B short isoform [Homo sapiens] 615 e-176
gi|46249397 Ras-related GTP binding B long isoform [Homo sapiens] 600 e-172
gi|11995472 Ras-related GTP binding C [Homo sapiens] 79 5e-15
gi|11034847 Ras-related GTP binding D [Homo sapiens] 76 3e-14
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 42 5e-04
gi|5453555 ras-related nuclear protein [Homo sapiens] 42 7e-04
gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens] 41 0.001
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens] 39 0.005
gi|8922601 ADP-ribosylation factor-like 10C [Homo sapiens] 39 0.005
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 39 0.005
gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens] 39 0.006
gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens] 39 0.006
gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens] 39 0.006
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 39 0.008
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 39 0.008
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 39 0.008
gi|6912244 ADP-ribosylation factor-like 5A isoform 1 [Homo sapiens] 39 0.008
gi|15718763 c-K-ras2 protein isoform a precursor [Homo sapiens] 38 0.010
gi|15718761 c-K-ras2 protein isoform b precursor [Homo sapiens] 38 0.010
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 38 0.010
gi|4758996 Ras-related protein Rab-33A [Homo sapiens] 38 0.013
gi|4502205 ADP-ribosylation factor 4 [Homo sapiens] 37 0.017
gi|194363762 v-Ha-ras Harvey rat sarcoma viral oncogene homolog ... 37 0.023
gi|34222246 v-Ha-ras Harvey rat sarcoma viral oncogene homolog i... 37 0.023
gi|4885425 v-Ha-ras Harvey rat sarcoma viral oncogene homolog is... 37 0.023
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens] 37 0.023
gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens] 37 0.023
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens] 37 0.023
gi|66879664 ADP-ribosylation factor 1 [Homo sapiens] 37 0.030
>gi|5729999 Ras-related GTP binding A [Homo sapiens]
Length = 313
Score = 625 bits (1613), Expect = e-179
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
Query: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
Query: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL
Sbjct: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
Query: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 301 ERVDGPKHSLLMR 313
ERVDGPKHSLLMR
Sbjct: 301 ERVDGPKHSLLMR 313
>gi|46249395 Ras-related GTP binding B short isoform [Homo sapiens]
Length = 346
Score = 615 bits (1587), Expect = e-176
Identities = 307/313 (98%), Positives = 310/313 (99%)
Query: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL
Sbjct: 34 LPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 93
Query: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA
Sbjct: 94 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 153
Query: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLEC+CFRTSIWDETLYKAWSSIVYQL
Sbjct: 154 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQL 213
Query: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
IPNVQQLEMNLRNFA+IIEADEVLLFERATFLVISHYQCKEQRD HRFEKISNIIKQFKL
Sbjct: 214 IPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKL 273
Query: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 274 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 333
Query: 301 ERVDGPKHSLLMR 313
ERVDGPK LLMR
Sbjct: 334 ERVDGPKQCLLMR 346
>gi|46249397 Ras-related GTP binding B long isoform [Homo sapiens]
Length = 374
Score = 600 bits (1548), Expect = e-172
Identities = 307/341 (90%), Positives = 310/341 (90%), Gaps = 28/341 (8%)
Query: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI----------------- 43
+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI
Sbjct: 34 LPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLSTYS 93
Query: 44 -----------DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVF 92
DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVF
Sbjct: 94 LVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVF 153
Query: 93 DVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLS 152
DVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLS
Sbjct: 154 DVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLS 213
Query: 153 RPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFL 212
RPLEC+CFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA+IIEADEVLLFERATFL
Sbjct: 214 RPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFL 273
Query: 213 VISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYV 272
VISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYV
Sbjct: 274 VISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYV 333
Query: 273 MVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 313
MVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK LLMR
Sbjct: 334 MVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 374
>gi|11995472 Ras-related GTP binding C [Homo sapiens]
Length = 399
Score = 79.0 bits (193), Expect = 5e-15
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 7 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 66
K ++LLMG SGK+S++ ++F +T L +T + + + +WD GQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 67 DTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLV 126
F + F + IFR LIYV D + +E + + +A N PD +
Sbjct: 121 MDFFDPTF--DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFI 177
Query: 127 HKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI 181
HK+D + +D QRD+ + ++ L + + TSI+D ++++A+S +V +LI
Sbjct: 178 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 237
Query: 182 PNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 215
P + LE L F ++ LF+ + + I+
Sbjct: 238 PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
>gi|11034847 Ras-related GTP binding D [Homo sapiens]
Length = 400
Score = 76.3 bits (186), Expect = 3e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 8/218 (3%)
Query: 3 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 62
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 58 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 117
Query: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 122
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 118 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 174
Query: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 175 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 234
Query: 178 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 215
+LIP + LE L F ++ LF+ + + I+
Sbjct: 235 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 272
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 42.4 bits (98), Expect = 5e-04
Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 7 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGG 65
K +V+++G G GKTS+ F + + + +D + V G + L +WD G
Sbjct: 42 KLQVIIIGSRGVGKTSLMER-FTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 100
Query: 66 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCL 125
Q+ F N TS +R+ + +I V+D+ +E D+ + ++ S DA++ +
Sbjct: 101 QERF--NSITSA---YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA--SEDAELLLV 153
Query: 126 VHKMDLVQEDQRDLIFKEREEDLRRLS 152
+K+D E R++ ++ E+ ++++
Sbjct: 154 GNKLDC--ETDREITRQQGEKFAQQIT 178
>gi|5453555 ras-related nuclear protein [Homo sapiens]
Length = 216
Score = 42.0 bits (97), Expect = 7e-04
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRF---LGNLVLNLWDCGG 65
K++L+G G+GKT+ + + ++ AT+ VE + F G + N+WD G
Sbjct: 12 KLVLVGDGGTGKTTF---VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 66 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSP 118
Q+ F RD + + I +FDV SR K++ + L + +N P
Sbjct: 69 QEKF-----GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP 116
>gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]
Length = 182
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDT 68
++LL+G +GKT++ + + I+ T G I S LN+WD GGQ
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-----GFKLNVWDIGGQRK 73
Query: 69 FMENYFTSQRDNIFRNVEVLIYVFDVESRE 98
+ N F N ++LIYV D R+
Sbjct: 74 IRPYW-----KNYFENTDILIYVIDSADRK 98
>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
Length = 222
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 7 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH-SHVRFLGNLV--LNLWDC 63
K K+L +G+ GKTS+ S N + AT+ ++ S +L + + L LWD
Sbjct: 31 KSKLLFLGEQSVGKTSIISRFMYNSFGCACQ---ATVGIDFLSKTMYLEDQIVQLQLWDT 87
Query: 64 GGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIF 123
GQ+ F S + R+ + + V+D+ + K+ + + A + D I
Sbjct: 88 AGQER-----FHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRA--ERGDDVVIM 140
Query: 124 CLVHKMDLVQEDQRDLIFKEREEDLRRLS 152
L +K+DL +++R + ++ EE R L+
Sbjct: 141 LLGNKIDL--DNKRQVTAEQGEEKSRNLN 167
>gi|8922601 ADP-ribosylation factor-like 10C [Homo sapiens]
Length = 186
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDT 68
++ L+G SGKT+ ++I + + D + T+ V GN+ + +WD GGQ
Sbjct: 22 ELTLVGLQYSGKTTFVNVIASGQFSED---MIPTVGFNMRKVT-KGNVTIKIWDIGGQPR 77
Query: 69 FMENYFTSQRDNIFRNVEVLIYVFDVESRE-LEKDMHYYQSCLE-AILQNSPDAKIFCLV 126
F S + R V ++Y+ D RE +E + + L+ LQ P + L
Sbjct: 78 -----FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP---VLVLG 129
Query: 127 HKMDLVQE-DQRDLIFK 142
+K DL D++ LI K
Sbjct: 130 NKRDLPNALDEKQLIEK 146
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 39.3 bits (90), Expect = 0.005
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH-SHVRFLGN--LVLNLWDCGG 65
K L++G +G+GK+ + N +D+ TI VE S V +G + L +WD G
Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNH---TIGVEFGSRVVNVGGKTVKLQIWDTAG 66
Query: 66 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCL 125
Q+ F S + +R + V+D+ SRE + + + +A SP+ +
Sbjct: 67 QERFR-----SVTRSYYRGAAGALLVYDITSRETYNSLAAWLT--DARTLASPNIVVILC 119
Query: 126 VHKMDLVQEDQRDLIFKE 143
+K DL + +R++ F E
Sbjct: 120 GNKKDL--DPEREVTFLE 135
>gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]
Length = 316
Score = 38.9 bits (89), Expect = 0.006
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDT--RRLGATIDVEHSHVRF--LG-NLVLNLWDC 63
KV+++G GKT + N +DT + ATI V+ RF LG L LWD
Sbjct: 111 KVIVVGDLSVGKTCL-----INRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDT 165
Query: 64 GGQDTFMENYFTSQRDNIFRNVEVLIYVF---DVESRELEKDMHYYQSCLEAILQNSPDA 120
GQ+ F +R + +I VF DV S E H Q +A+ +N P +
Sbjct: 166 AGQER-----FKCIASTYYRGAQAIIIVFNLNDVASLE-----HTKQWLADALKENDPSS 215
Query: 121 KIFCLV-HKMDLVQEDQRDLIFKE 143
+ LV K DL Q L+ K+
Sbjct: 216 VLLFLVGSKKDLSTPAQYALMEKD 239
>gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens]
Length = 268
Score = 38.9 bits (89), Expect = 0.006
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDT--RRLGATIDVEHSHVRF--LG-NLVLNLWDC 63
KV+++G GKT + N +DT + ATI V+ RF LG L LWD
Sbjct: 112 KVIVVGDLSVGKTCL-----INRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDT 166
Query: 64 GGQDTFMENYFTSQRDNIFRNVEVLIYVF---DVESRELEKDMHYYQSCLEAILQNSPDA 120
GQ+ F +R + +I VF DV S E H Q +A+ +N P +
Sbjct: 167 AGQER-----FKCIASTYYRGAQAIIIVFNLNDVASLE-----HTKQWLADALKENDPSS 216
Query: 121 KIFCLV-HKMDLVQEDQRDLIFKE 143
+ LV K DL Q L+ K+
Sbjct: 217 VLLFLVGSKKDLSTPAQYALMEKD 240
>gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]
Length = 259
Score = 38.9 bits (89), Expect = 0.006
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDT--RRLGATIDVEHSHVRF--LG-NLVLNLWDC 63
KV+++G GKT + N +DT + ATI V+ RF LG L LWD
Sbjct: 54 KVIVVGDLSVGKTCL-----INRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDT 108
Query: 64 GGQDTFMENYFTSQRDNIFRNVEVLIYVF---DVESRELEKDMHYYQSCLEAILQNSPDA 120
GQ+ F +R + +I VF DV S E H Q +A+ +N P +
Sbjct: 109 AGQER-----FKCIASTYYRGAQAIIIVFNLNDVASLE-----HTKQWLADALKENDPSS 158
Query: 121 KIFCLV-HKMDLVQEDQRDLIFKE 143
+ LV K DL Q L+ K+
Sbjct: 159 VLLFLVGSKKDLSTPAQYALMEKD 182
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.008
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 2 PNTAMKK------KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN 55
P +AM K K+LL+G SG GKT + I FA +T ID + V G
Sbjct: 121 PVSAMAKAYDHLFKLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGK 179
Query: 56 LV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAIL 114
+ L +WD GQ+ F + +R +I +D+ EK Q+ +++I+
Sbjct: 180 KIKLQVWDTAGQER-----FKTITTAYYRGAMGIILAYDITD---EKSFENIQNWMKSIM 231
Query: 115 QN-SPDAKIFCLVHKMDL-----VQEDQRDLIFKE 143
+N S + L +K D+ VQ++Q D + +E
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLARE 266
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.008
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 2 PNTAMKK------KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN 55
P +AM K K+LL+G SG GKT + I FA +T ID + V G
Sbjct: 121 PVSAMAKAYDHLFKLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGK 179
Query: 56 LV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAIL 114
+ L +WD GQ+ F + +R +I +D+ EK Q+ +++I+
Sbjct: 180 KIKLQVWDTAGQER-----FKTITTAYYRGAMGIILAYDITD---EKSFENIQNWMKSIM 231
Query: 115 QN-SPDAKIFCLVHKMDL-----VQEDQRDLIFKE 143
+N S + L +K D+ VQ++Q D + +E
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLARE 266
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.008
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 2 PNTAMKK------KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN 55
P +AM K K+LL+G SG GKT + I FA +T ID + V G
Sbjct: 121 PVSAMAKAYDHLFKLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGK 179
Query: 56 LV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAIL 114
+ L +WD GQ+ F + +R +I +D+ EK Q+ +++I+
Sbjct: 180 KIKLQVWDTAGQER-----FKTITTAYYRGAMGIILAYDITD---EKSFENIQNWMKSIM 231
Query: 115 QN-SPDAKIFCLVHKMDL-----VQEDQRDLIFKE 143
+N S + L +K D+ VQ++Q D + +E
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLARE 266
>gi|6912244 ADP-ribosylation factor-like 5A isoform 1 [Homo
sapiens]
Length = 179
Score = 38.5 bits (88), Expect = 0.008
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI-DVEHSHVRFLGNLVLNLWDCGGQD 67
KV+++G +GKT++ N + + +G+ + ++ ++ RFL +WD GGQ+
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFL------MWDIGGQE 71
Query: 68 TFMENYFTSQRDNIFRNVEVLIYVFDVESRE 98
+ ++ T + N E +I V D RE
Sbjct: 72 SLRSSWNT-----YYTNTEFVIVVVDSTDRE 97
>gi|15718763 c-K-ras2 protein isoform a precursor [Homo sapiens]
Length = 189
Score = 38.1 bits (87), Expect = 0.010
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 61
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 62 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 121
D GQ+ + ++ RD R E + VF + + + +D+H+Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV-KDSEDVP 110
Query: 122 IFCLVHKMDL 131
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|15718761 c-K-ras2 protein isoform b precursor [Homo sapiens]
Length = 188
Score = 38.1 bits (87), Expect = 0.010
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 61
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 62 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 121
D GQ+ + ++ RD R E + VF + + + +D+H+Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV-KDSEDVP 110
Query: 122 IFCLVHKMDL 131
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 38.1 bits (87), Expect = 0.010
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQD 67
K+LL+G SG GKT + I FA +T ID + V G + L +WD GQ+
Sbjct: 10 KLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68
Query: 68 TFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQN-SPDAKIFCLV 126
F + +R +I V+D+ EK Q+ +++I +N S + L
Sbjct: 69 R-----FKTITTAYYRGAMGIILVYDITD---EKSFENIQNWMKSIKENASAGVERLLLG 120
Query: 127 HKMDL-----VQEDQRDLIFKE 143
+K D+ VQ++Q D + +E
Sbjct: 121 NKCDMEAKRKVQKEQADKLARE 142
>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
Length = 237
Score = 37.7 bits (86), Expect = 0.013
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQD 67
K++++G S GKT + + F D +D V G + + +WD GQ+
Sbjct: 38 KIIVIGDSNVGKTCL-TFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
Query: 68 TFMENYFTSQRDNIFRNVEVLIYVFDV 94
F + S ++ +RNV +++V+DV
Sbjct: 97 RFRK----SMVEHYYRNVHAVVFVYDV 119
>gi|4502205 ADP-ribosylation factor 4 [Homo sapiens]
Length = 180
Score = 37.4 bits (85), Expect = 0.017
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID-VEHSHVRFLGNLVLNLWDCGGQD 67
++L++G +GKT++ + I +G ++ VE+ ++ F +WD GGQD
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICF------TVWDVGGQD 72
Query: 68 TFMENYFTSQRDNIFRNVEVLIYVFDVESRE-LEKDMHYYQSCLEAILQNSPDAKIFCLV 126
+ + F+N + LI+V D RE +++ Q L ++ DA +
Sbjct: 73 RIRPLW-----KHYFQNTQGLIFVVDSNDRERIQEVADELQKML--LVDELRDAVLLLFA 125
Query: 127 HKMDL 131
+K DL
Sbjct: 126 NKQDL 130
>gi|194363762 v-Ha-ras Harvey rat sarcoma viral oncogene homolog
isoform 1 [Homo sapiens]
Length = 189
Score = 37.0 bits (84), Expect = 0.023
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 61
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 62 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 121
D GQ+ + ++ RD R E + VF + + + +D+H Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV-KDSDDVP 110
Query: 122 IFCLVHKMDL 131
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|34222246 v-Ha-ras Harvey rat sarcoma viral oncogene homolog
isoform 2 [Homo sapiens]
Length = 170
Score = 37.0 bits (84), Expect = 0.023
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 61
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 62 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 121
D GQ+ + ++ RD R E + VF + + + +D+H Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV-KDSDDVP 110
Query: 122 IFCLVHKMDL 131
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|4885425 v-Ha-ras Harvey rat sarcoma viral oncogene homolog
isoform 1 [Homo sapiens]
Length = 189
Score = 37.0 bits (84), Expect = 0.023
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 61
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 62 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 121
D GQ+ + ++ RD R E + VF + + + +D+H Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV-KDSDDVP 110
Query: 122 IFCLVHKMDL 131
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
Length = 229
Score = 37.0 bits (84), Expect = 0.023
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSH--VRFLGNLV-LNLWDCGG 65
K++++G S GKT + A R R ATI V+ V G + + LWD G
Sbjct: 35 KIIVIGDSNVGKTCLTYRFCAG---RFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAG 91
Query: 66 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQN 116
Q+ F + S + +RNV +++V+D+ + + + + C + +L N
Sbjct: 92 QERFRK----SMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLAN 139
>gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens]
Length = 179
Score = 37.0 bits (84), Expect = 0.023
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID---VEHSHVRFLGNLVLNLWDCGG 65
KV+++G +GKT++ N + + +G+ ++ V+++H FL +WD GG
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH--FL------MWDIGG 69
Query: 66 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRE 98
Q++ ++ T + N E +I V D RE
Sbjct: 70 QESLRSSWNT-----YYSNTEFIILVVDSIDRE 97
>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
Length = 199
Score = 37.0 bits (84), Expect = 0.023
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 2 PNTAMKKKVLLMGKSGSGKTSM-RSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVL 58
P + K++++G G GKTS+ + + LGA+I S + LG+ L L
Sbjct: 3 PRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASI---LSKIIILGDTTLKL 59
Query: 59 NLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQ-SCLEAILQNS 117
+WD GGQ+ F S ++ + I FDV E + + ++ L I+
Sbjct: 60 QIWDTGGQER-----FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME 114
Query: 118 PDAKIFCLVHKMDL 131
+ L +K+DL
Sbjct: 115 QSYPMVLLGNKIDL 128
>gi|66879664 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 36.6 bits (83), Expect = 0.030
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 9 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID-VEHSHVRFLGNLVLNLWDCGGQD 67
++L++G +GKT++ + I +G ++ VE+ ++ F +WD GGQD
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 72
Query: 68 TFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNS-PDAKIFCLV 126
+ + F+N + LI+V D RE + + + + ++ DA +
Sbjct: 73 KIRPLW-----RHYFQNTQGLIFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFA 125
Query: 127 HKMDL 131
+K DL
Sbjct: 126 NKQDL 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,536,561
Number of Sequences: 37866
Number of extensions: 409028
Number of successful extensions: 1777
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 135
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.