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Search of human proteins with 5729939
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729939 cleavage and polyadenylation specific factor 4,
30kDa isoform 1 [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 585 e-167
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 524 e-149
gi|193788659 cleavage and polyadenylation specific factor 4-like... 265 4e-71
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 92 5e-19
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 57 2e-08
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 56 3e-08
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 56 4e-08
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 51 1e-06
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 50 2e-06
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 48 8e-06
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 48 8e-06
gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo ... 48 8e-06
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 48 8e-06
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 47 2e-05
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 45 5e-05
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 45 5e-05
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 45 9e-05
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 45 9e-05
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 44 1e-04
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 41 0.001
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 41 0.001
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 39 0.004
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 38 0.011
gi|15812180 butyrate response factor 1 [Homo sapiens] 37 0.014
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 37 0.018
gi|46411174 muscleblind-like 1 isoform g [Homo sapiens] 37 0.024
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 37 0.024
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 37 0.024
gi|46411164 muscleblind-like 1 isoform b [Homo sapiens] 37 0.024
gi|41281591 muscleblind-like 1 isoform a [Homo sapiens] 37 0.024
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 585 bits (1509), Expect = e-167
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
Query: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
Sbjct: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
Query: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP 180
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP 180
Query: 181 LPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPL 240
LPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPL
Sbjct: 181 LPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPL 240
Query: 241 EQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
EQVTCYKCGEKGHYANRCTKGHLAFLSGQ
Sbjct: 241 EQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 524 bits (1349), Expect = e-149
Identities = 244/269 (90%), Positives = 244/269 (90%), Gaps = 25/269 (9%)
Query: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
Query: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
Sbjct: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
Query: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP 180
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP 180
Query: 181 LPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPL 240
LPQQTQPPAK QRTPQVIGVMQSQNSSAGNRGPRPL
Sbjct: 181 LPQQTQPPAK-------------------------QRTPQVIGVMQSQNSSAGNRGPRPL 215
Query: 241 EQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
EQVTCYKCGEKGHYANRCTKGHLAFLSGQ
Sbjct: 216 EQVTCYKCGEKGHYANRCTKGHLAFLSGQ 244
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 265 bits (676), Expect = 4e-71
Identities = 111/164 (67%), Positives = 130/164 (79%)
Query: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
MQE+IA ++ F E VE Q G LPF GMDKS +AVC FF K C KG +CPFRH
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD 60
Query: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
GEK VVCKHWLRGLCKKGD C+FLH+YD+T+MPECYFYSKFG+CSNKEC FLH+ P K
Sbjct: 61 RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
Query: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKF 164
+DCPWYD+GFCK GPLC++RH R++C+NYLVGFCPEGP C+F
Sbjct: 121 SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQF 164
Score = 48.1 bits (113), Expect = 8e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 111 PFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR---RVICVNYLVGFCPEGPSCKFMH 166
PF +D +S C ++ +G C+ G LC RH R V+C ++L G C +G CKF+H
Sbjct: 29 PFQGMD-KSASAVCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLH 86
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 92.0 bits (227), Expect = 5e-19
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 49 CGKGGMCPFRHISGEKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSKFGECSN 107
C +G CP+ H EK VC ++RG CKK D C F H KMP C ++ K G CSN
Sbjct: 682 CNRGERCPYIH-DPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICSN 739
Query: 108 KECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYL-VGFCPEGPSCKFMH 166
CP+ H+ K + C + +G+C G C+ +HT ++C ++ G CP G C+ +H
Sbjct: 740 SNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHT--LLCPDFARRGACPRGAQCQLLH 797
Score = 44.3 bits (103), Expect = 1e-04
Identities = 52/215 (24%), Positives = 74/215 (34%), Gaps = 34/215 (15%)
Query: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHI-SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT 91
+ K VC +FLK C CP+ H+ K VC +L+G C G +C+ H
Sbjct: 721 VSKEKMPVCSYFLKGICSNSN-CPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHTL--- 776
Query: 92 KMPECYFYSKFGEC-SNKECPFLH-----------IDPESKIKDCPWYDRGFCKHG---P 136
C +++ G C +C LH P D R HG P
Sbjct: 777 ---LCPDFARRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKP 833
Query: 137 LCRHRHTRRVICVNYLVG-------FCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPA 189
R TR+ L CP G S + ++ PP + P+
Sbjct: 834 SASQRPTRQTPSSAALTAAAVAAPPHCP-GGSASPSSSKASSSSSSSSSPPASLDHEAPS 892
Query: 190 KQSNNPPLQRSSSLIQL---TSQNSSPNQQRTPQV 221
Q S+ L +L S SSP+ P+V
Sbjct: 893 LQEAALAAACSNRLCKLPSFISLQSSPSPGAQPRV 927
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHIS--GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 90
++ G +C++FL+ C KG C F H + ++ +CK +L+G C KG+ C ++H
Sbjct: 270 VEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH---- 325
Query: 91 TKMPECYFYSKFGEC-SNKECPFLHIDPESKIK 122
+ P C FY +C C F H D + K
Sbjct: 326 NEFP-CKFYHSGAKCYQGDNCKFSHDDLTKETK 357
Score = 49.7 bits (117), Expect = 3e-06
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 27/100 (27%)
Query: 67 VCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPW 126
+CK++L G C KGDQC+F H+ ++ K E C +
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEI---------------------------CKF 309
Query: 127 YDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMH 166
Y +G+C G C + H + C +G +CKF H
Sbjct: 310 YLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSH 349
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 124 CPWYDRGFCKHGPLCRHRHT-----RRVICVNYLVGFCPEGPSCKFMHPRF 169
C ++ G C G C+ H R+ IC YL G+C +G +C +MH F
Sbjct: 278 CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEF 328
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 56.2 bits (134), Expect = 3e-08
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 32 GMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKT---------VVCKHWLRGLCKKGDQC 82
GM+K G E F G GG +R +K V+CK+++ G C GD C
Sbjct: 351 GMNKGGMNDDEDFYDEDMGDGGGGSYRSRDHDKPHQQSDKKGKVICKYFVEGRCTWGDHC 410
Query: 83 EFLHEYDMTKMPE-CYFYSKFGECSNKE-CPFLHIDPESKIKDCPWYDRGFCKHGPLCRH 140
F H+ ++ K E C FY G C+ E CP++H D K+ ++ G C +G C
Sbjct: 411 NFSHDIELPKKRELCKFYIT-GFCARAENCPYMHGDFPCKL----YHTTGNCINGDDCMF 465
Query: 141 RH 142
H
Sbjct: 466 SH 467
Score = 51.6 bits (122), Expect = 7e-07
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 29 PFPGMDKSGAAVCEFFLKAACGKGGMCPFRH--ISGEKTVVCKHWLRGLCKKGDQCEFLH 86
P DK G +C++F++ C G C F H +K +CK ++ G C + + C ++H
Sbjct: 384 PHQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMH 443
Query: 87 EYDMTKMPECYFYSKFGECSN-KECPFLHIDP 117
P C Y G C N +C F H DP
Sbjct: 444 ----GDFP-CKLYHTTGNCINGDDCMFSH-DP 469
Score = 37.7 bits (86), Expect = 0.011
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 111 PFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHT-----RRVICVNYLVGFCPEGPSCKFM 165
P D + K+ C ++ G C G C H +R +C Y+ GFC +C +M
Sbjct: 384 PHQQSDKKGKVI-CKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYM 442
Query: 166 HPRF 169
H F
Sbjct: 443 HGDF 446
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 55.8 bits (133), Expect = 4e-08
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHIS--GEKTVVCKHWLRGLCKKGDQCEFLH-EYD 89
+++ G +C++FL+ C KG C F H + +K +CK +++G C +G+ C +LH EY
Sbjct: 189 VERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEY- 247
Query: 90 MTKMPECYFYSKFGECSNKE-CPFLH--IDPESK 120
C FY +C E C F H + PE++
Sbjct: 248 -----PCKFYHTGTKCYQGEYCKFSHAPLTPETQ 276
Score = 48.1 bits (113), Expect = 8e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 67 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSKFGECSNKE-CPFLHIDPESKIKDC 124
+CK++L C KGDQC+F H+ ++ K E C FY + G C+ E C +LH + C
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQ-GYCTRGENCLYLHNE-----YPC 249
Query: 125 PWYDRGF-CKHGPLCRHRH 142
+Y G C G C+ H
Sbjct: 250 KFYHTGTKCYQGEYCKFSH 268
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 124 CPWYDRGFCKHGPLCRHRHTRRV-----ICVNYLVGFCPEGPSCKFMHPRF 169
C ++ C G C+ H + +C Y+ G+C G +C ++H +
Sbjct: 197 CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEY 247
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 43/188 (22%)
Query: 64 KTVVCKHWLRGLCKKGDQCEFLHEY-DMTKMPECYFYSKFGECSNKECPFLHIDPESKIK 122
KT CK R LC++G C + H D + P + Y + CP + E
Sbjct: 293 KTEPCKKPPR-LCRQGYACPYYHNSKDRRRSPRKHKYR------SSPCPNVKHGDE---- 341
Query: 123 DCPWYDRGFCKHGPLCRHRHTRRVICVNYLV------------GFCPEGPSCKFMHPRFE 170
W D G C++G C++ HTR + + G CP GP C F H
Sbjct: 342 ---WGDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAH---- 394
Query: 171 LPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQNS----SPNQQRTPQVIGVMQ 226
EQPPL QP + S+ P Q L ++ SP+ P + +
Sbjct: 395 -----VEQPPLSDDLQPSSAVSS--PTQPGPVLYMPSAAGDSVPVSPSSPHAPD-LSALL 446
Query: 227 SQNSSAGN 234
+NSS G+
Sbjct: 447 CRNSSLGS 454
Score = 28.1 bits (61), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 146 VICVNY--LVGFCPEGPSCKFMH 166
V C Y G CPEG C F+H
Sbjct: 164 VYCTKYDEATGLCPEGDECPFLH 186
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 50.4 bits (119), Expect = 2e-06
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 41/177 (23%)
Query: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
K + C++++ G+C++G QC F H+ +K
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTI--------------------------- 36
Query: 124 CPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEG-PSCKFMHPRFELPMGTTEQPPLP 182
C +Y +G+C +G CR+ HTR VG PS F P P
Sbjct: 37 CKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPH-----------PPS 85
Query: 183 QQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRP 239
+ T K +++ P +R + L +N S +R Q M S S + P P
Sbjct: 86 EVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQ--PSMVSNPGSCSDPQPSP 140
Score = 40.8 bits (94), Expect = 0.001
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 41 CEFFLKAACGKGGMCPFRH--ISGEKTVVCKHWLRGLCKKGDQCEFLH 86
C +F+ C +G C F H + + + +CK++ +G C G +C + H
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 48.1 bits (113), Expect = 8e-06
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 596 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 653
Query: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
P+ P C++ P C +++ C Y C P C F
Sbjct: 654 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 708
Query: 165 MHPRFELP 172
HP +P
Sbjct: 709 YHPTINVP 716
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 48.1 bits (113), Expect = 8e-06
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 601 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 658
Query: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
P+ P C++ P C +++ C Y C P C F
Sbjct: 659 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 713
Query: 165 MHPRFELP 172
HP +P
Sbjct: 714 YHPTINVP 721
>gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
Length = 306
Score = 48.1 bits (113), Expect = 8e-06
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 172 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 229
Query: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
P+ P C++ P C +++ C Y C P C F
Sbjct: 230 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 284
Query: 165 MHPRFELP 172
HP +P
Sbjct: 285 YHPTINVP 292
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 48.1 bits (113), Expect = 8e-06
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 445 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 502
Query: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
P+ P C++ P C +++ C Y C P C F
Sbjct: 503 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 557
Query: 165 MHPRFELP 172
HP +P
Sbjct: 558 YHPTINVP 565
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 47.0 bits (110), Expect = 2e-05
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 41 CEFFLKAACGKGGMCPFRHIS---GEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-- 95
C FF + C KG CPFRH G +T VC W G C + C F H K E
Sbjct: 8 CYFFFYSTCTKGDSCPFRHCEAAIGNET-VCTLWQEGRCFR-QVCRFRHMEIDKKRSEIP 65
Query: 96 CYFYSKFGECSNKECPFLH 114
CY+ ++ C C F H
Sbjct: 66 CYWENQPTGCQKLNCAFHH 84
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 19/187 (10%)
Query: 68 CKHWLRGLCKKGDQCEFLH-EYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD--C 124
C + C KGD C F H E + C + + G C + C F H++ + K + C
Sbjct: 8 CYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQE-GRCFRQVCRFRHMEIDKKRSEIPC 66
Query: 125 PWYDRGFCKHGPLCRHRHTRRVICVNYLVG-FCPEGPSCKFMHPRFELPMGTTEQPPLPQ 183
W ++ C H R Y+ G F P PS + E P + L
Sbjct: 67 YWENQPTGCQKLNCAFHHNRG----RYVDGLFLP--PSKTVLPTVPESPEEEVKASQLSV 120
Query: 184 QTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVM------QSQNSSAGNRGP 237
Q + QSN P R S++++ S + P+ P VI Q S G+
Sbjct: 121 QQNKLSVQSNPSPQLR--SVMKVESSENVPSPTHPPVVINAADDDEDDDDQFSEEGDETK 178
Query: 238 RPLEQVT 244
P Q T
Sbjct: 179 TPTLQPT 185
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 45.4 bits (106), Expect = 5e-05
Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 31/129 (24%)
Query: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHID 116
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 436 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 493
Query: 117 PESKI--------KDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCK 163
+ P C++ P C +++ C Y C P C
Sbjct: 494 RRIPVLSPKPAVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCT 548
Query: 164 FMHPRFELP 172
F HP +P
Sbjct: 549 FYHPTINVP 557
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 45.4 bits (106), Expect = 5e-05
Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 31/129 (24%)
Query: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHID 116
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 601 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 658
Query: 117 PESKI--------KDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCK 163
+ P C++ P C +++ C Y C P C
Sbjct: 659 RRIPVLSPKPAVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCT 713
Query: 164 FMHPRFELP 172
F HP +P
Sbjct: 714 FYHPTINVP 722
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 44.7 bits (104), Expect = 9e-05
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 27/81 (33%)
Query: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
K V C++++ G+CK+GD C + H+ L P S +
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHD-------------------------LSDSPYSVV-- 89
Query: 124 CPWYDRGFCKHGPLCRHRHTR 144
C ++ RG+C +G CR+ H++
Sbjct: 90 CKYFQRGYCIYGDRCRYEHSK 110
Score = 29.6 bits (65), Expect = 2.9
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 143 TRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTT---EQPPLPQQTQPPAKQSNNPPLQR 199
T++V C ++ G C EG +C++ H + P Q + + P Q
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
Query: 200 SSSLIQLTSQNSSPNQQRTPQVIGVMQSQNS 230
++ +LT+++S ++G + N+
Sbjct: 116 EATATELTTKSSLAASSSLSSIVGPLVEMNT 146
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 44.7 bits (104), Expect = 9e-05
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 27/81 (33%)
Query: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
K V C++++ G+CK+GD C + H+ L P S +
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHD-------------------------LSDSPYSVV-- 89
Query: 124 CPWYDRGFCKHGPLCRHRHTR 144
C ++ RG+C +G CR+ H++
Sbjct: 90 CKYFQRGYCIYGDRCRYEHSK 110
Score = 29.6 bits (65), Expect = 2.9
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 143 TRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTT---EQPPLPQQTQPPAKQSNNPPLQR 199
T++V C ++ G C EG +C++ H + P Q + + P Q
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
Query: 200 SSSLIQLTSQNSSPNQQRTPQVIGVMQSQNS 230
++ +LT+++S ++G + N+
Sbjct: 116 EATATELTTKSSLAASSSLSSIVGPLVEMNT 146
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/147 (26%), Positives = 56/147 (38%), Gaps = 44/147 (29%)
Query: 47 AACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMP-------ECYFY 99
A G GG +C+ +LR +CK+G +C + H DM+++ E F
Sbjct: 29 AGVGSGG--------ASSDAICRDFLRNVCKRGKRCRYRHP-DMSEVSNLGVSKNEFIFC 79
Query: 100 SKFG--ECSNKECPFLHIDPESKIKDCPWYDRGFCKHG---PLCRHRHTRRV-------- 146
F ECS C F+H E + G+ K G P R + +
Sbjct: 80 HDFQNKECSRPNCRFIHGSKED--------EDGYKKTGELPPRLRQKVAAGLGLSPADLP 131
Query: 147 -------ICVNYLVGFCPEGPSCKFMH 166
IC ++L G C G CKF H
Sbjct: 132 NGKEEVPICRDFLKGDCQRGAKCKFRH 158
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 28/145 (19%)
Query: 24 GAQPLPFPGMDKSGA---AVCEFFLKAACGKGGMCPFRH----------ISGEKTVVCKH 70
G++ G+ GA A+C FL+ C +G C +RH +S + + C
Sbjct: 22 GSEEASGAGVGSGGASSDAICRDFLRNVCKRGKRCRYRHPDMSEVSNLGVSKNEFIFCHD 81
Query: 71 WLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGE----CSNKECPFLHIDP------ESK 120
+ C + C F+H +K E Y K GE K L + P + +
Sbjct: 82 FQNKECSR-PNCRFIHG---SKEDE-DGYKKTGELPPRLRQKVAAGLGLSPADLPNGKEE 136
Query: 121 IKDCPWYDRGFCKHGPLCRHRHTRR 145
+ C + +G C+ G C+ RH +R
Sbjct: 137 VPICRDFLKGDCQRGAKCKFRHLQR 161
Score = 33.5 bits (75), Expect = 0.20
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 23 LGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
LG P P K +C FLK C +G C FRH+
Sbjct: 123 LGLSPADLPN-GKEEVPICRDFLKGDCQRGAKCKFRHL 159
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/167 (23%), Positives = 56/167 (33%), Gaps = 57/167 (34%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESKIK-------------------------------------DCPWYDRGFC 132
C +LH P K + C Y RG C
Sbjct: 66 CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVVCREYQRGNC 125
Query: 133 KHGPL-CRHRH-----------TRRVICVNYLVGFCPEGPSCKFMHP 167
G CR H +C++Y+ G C CK+ HP
Sbjct: 126 NRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSR-EKCKYFHP 171
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/167 (23%), Positives = 56/167 (33%), Gaps = 57/167 (34%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESKIK-------------------------------------DCPWYDRGFC 132
C +LH P K + C Y RG C
Sbjct: 66 CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVVCREYQRGNC 125
Query: 133 KHGPL-CRHRH-----------TRRVICVNYLVGFCPEGPSCKFMHP 167
G CR H +C++Y+ G C CK+ HP
Sbjct: 126 NRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSR-EKCKYFHP 171
>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
1 [Homo sapiens]
Length = 181
Score = 39.3 bits (90), Expect = 0.004
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 66 VVCKHWLR-GLCKKGDQCEFLHEYDMTKMPECY--FYSKFGECSNKE-CPFL--HI---- 115
V C + + G+C+ GD+C LH T E + K+GE C L H+
Sbjct: 16 VNCSFYFKIGVCRHGDRCSRLHNKP-TFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNV 74
Query: 116 --------DPESKIKDCP--WYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFM 165
D E + + W++ G HG L R C Y +G C G C FM
Sbjct: 75 YVKFRREEDGERAVAELSNRWFN-GQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFM 133
Query: 166 HPRFELPMGTTEQPPL----PQQTQPPAKQSNNPPLQRS 200
H R P+ Q L P++ PP + + P +R+
Sbjct: 134 HLR---PISQNLQRQLYGRGPRRRSPPRFHTGHHPRERN 169
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 37.7 bits (86), Expect = 0.011
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHID--PESKI 121
K+VVC + +G C KGD+C+F H D+T +C S + + ++E +D E K+
Sbjct: 101 KSVVCAFFKQGQCTKGDKCKFSH--DLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKL 158
Query: 122 KDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGF----------CPEGPS-CKFMH 166
++ KHG + + +++C ++L CP G C + H
Sbjct: 159 EEVV-----NKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRH 209
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 37.4 bits (85), Expect = 0.014
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 125 PWYDRGFCKHGPLC-------------RHRHTRRVICVNY-LVGFCPEGPSCKFMH 166
P+ + G CK+G C RH + +C + +GFCP GP C F+H
Sbjct: 122 PFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 37.0 bits (84), Expect = 0.018
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 125 PWYDRGFCKHGPLC-------------RHRHTRRVICVNY-LVGFCPEGPSCKFMH 166
P+ + G CK+G C RH + +C + +GFCP GP C F+H
Sbjct: 161 PFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 216
>gi|46411174 muscleblind-like 1 isoform g [Homo sapiens]
Length = 342
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESK 120
C +LH P K
Sbjct: 66 CKYLHPPPHLK 76
Score = 36.6 bits (83), Expect = 0.024
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESK 120
C +LH P K
Sbjct: 66 CKYLHPPPHLK 76
Score = 36.6 bits (83), Expect = 0.024
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESK 120
C +LH P K
Sbjct: 66 CKYLHPPPHLK 76
Score = 36.6 bits (83), Expect = 0.024
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
>gi|46411164 muscleblind-like 1 isoform b [Homo sapiens]
Length = 370
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESK 120
C +LH P K
Sbjct: 66 CKYLHPPPHLK 76
Score = 36.6 bits (83), Expect = 0.024
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
>gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
Length = 382
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CPFLHIDPESK 120
C +LH P K
Sbjct: 66 CKYLHPPPHLK 76
Score = 36.6 bits (83), Expect = 0.024
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,137,348
Number of Sequences: 37866
Number of extensions: 712814
Number of successful extensions: 3791
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 3211
Number of HSP's gapped (non-prelim): 586
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.