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Search of human proteins with 5729740
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729740 BCL2-like 11 isoform 6 [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729740 BCL2-like 11 isoform 6 [Homo sapiens] 288 1e-78
gi|20336315 BCL2-like 11 isoform 1 [Homo sapiens] 226 6e-60
gi|46276880 BCL2-like 11 isoform 9 [Homo sapiens] 152 8e-38
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 33 0.098
gi|210147487 akirin 1 isoform 2 [Homo sapiens] 32 0.22
gi|13375791 akirin 1 isoform 1 [Homo sapiens] 32 0.22
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 32 0.22
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 31 0.28
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 31 0.28
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 31 0.28
gi|148368962 NKF3 kinase family member [Homo sapiens] 31 0.28
gi|238859653 pleckstrin homology domain containing family A memb... 31 0.37
gi|62988361 absent in melanoma 1 [Homo sapiens] 31 0.37
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 30 0.49
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 30 0.49
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 30 0.63
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 30 0.63
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 30 0.63
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 30 0.63
gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo sap... 30 0.63
gi|26051231 lactamase, beta isoform a [Homo sapiens] 30 0.63
gi|26051233 lactamase, beta isoform b [Homo sapiens] 30 0.63
gi|224282174 DH and coiled-coil domain-containing protein [Homo ... 30 0.83
gi|4557853 transcription factor SOX9 [Homo sapiens] 30 0.83
gi|42718017 retinoblastoma binding protein 8 isoform b [Homo sap... 30 0.83
gi|42718015 retinoblastoma binding protein 8 isoform a [Homo sap... 30 0.83
gi|4506441 retinoblastoma binding protein 8 isoform a [Homo sapi... 30 0.83
gi|239582735 radial spoke head 4 homolog A isoform 2 [Homo sapiens] 30 0.83
gi|58219006 radial spoke head 4 homolog A isoform 1 [Homo sapiens] 30 0.83
gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens] 30 0.83
>gi|5729740 BCL2-like 11 isoform 6 [Homo sapiens]
Length = 138
Score = 288 bits (736), Expect = 1e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP 60
MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
Sbjct: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP 60
Query: 61 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 120
CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
Sbjct: 61 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 120
Query: 121 MVILRLLRYIVRLVWRMH 138
MVILRLLRYIVRLVWRMH
Sbjct: 121 MVILRLLRYIVRLVWRMH 138
>gi|20336315 BCL2-like 11 isoform 1 [Homo sapiens]
Length = 198
Score = 226 bits (575), Expect = 6e-60
Identities = 128/198 (64%), Positives = 129/198 (65%), Gaps = 60/198 (30%)
Query: 1 MAKQPSDVSSECDREGRQLQPAE-----RP---------PQLRP-------------GAP 33
MAKQPSDVSSECDREGRQLQPAE RP PQ P G+P
Sbjct: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
Query: 34 TSLQTEPQ---------------------------------DRSPAPMSCDKSTQTPSPP 60
P DRSPAPMSCDKSTQTPSPP
Sbjct: 61 QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
Query: 61 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 120
CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
Sbjct: 121 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 180
Query: 121 MVILRLLRYIVRLVWRMH 138
MVILRLLRYIVRLVWRMH
Sbjct: 181 MVILRLLRYIVRLVWRMH 198
>gi|46276880 BCL2-like 11 isoform 9 [Homo sapiens]
Length = 112
Score = 152 bits (384), Expect = 8e-38
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP 60
MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
Sbjct: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP 60
Query: 61 CQAFNHYLSAM 71
CQAFNHYLSAM
Sbjct: 61 CQAFNHYLSAM 71
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 32.7 bits (73), Expect = 0.098
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 26 PQLRPGAPTSLQT-EPQDRSPAPMSCDKSTQTPSPP 60
PQ R P S Q+ PQ RSP P SC P PP
Sbjct: 396 PQRRSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPP 431
Score = 31.2 bits (69), Expect = 0.28
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 21 PAERPPQLR-PGAPTSLQTEPQDRSPAPMSCDKSTQTPSP 59
P P Q R P +P+ PQ RSP P SC Q+PSP
Sbjct: 376 PCPSPQQRRSPASPSCPSPVPQRRSPVPPSC----QSPSP 411
>gi|210147487 akirin 1 isoform 2 [Homo sapiens]
Length = 147
Score = 31.6 bits (70), Expect = 0.22
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 21 PAERPPQLRPGAPTSLQTEPQD-RSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQAE 78
P RPP P P QT PQ + PAP ++ TP Q S R E
Sbjct: 36 PGLRPPDAEPPPPFQTQTPPQSLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLE 94
>gi|13375791 akirin 1 isoform 1 [Homo sapiens]
Length = 192
Score = 31.6 bits (70), Expect = 0.22
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 21 PAERPPQLRPGAPTSLQTEPQD-RSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQAE 78
P RPP P P QT PQ + PAP ++ TP Q S R E
Sbjct: 36 PGLRPPDAEPPPPFQTQTPPQSLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLE 94
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 31.6 bits (70), Expect = 0.22
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 10 SECDREGRQLQPAERPPQL--RPGAPTS-LQTEPQDRSPAPMSCDKSTQTPSPPCQAFNH 66
S+ ++ Q P ++PP +P APTS LQ PQ + P S ++ PSP Q+ +
Sbjct: 213 SQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSP 272
Query: 67 YLSAMASMRQAEPADMRP 84
S P+ + P
Sbjct: 273 PQKPSQSPGHGLPSPLTP 290
Score = 29.6 bits (65), Expect = 0.83
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 3 KQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTE----------PQDRSPAPMSCDK 52
+QP S + QLQ A +P Q +P + + Q + PQ S +P
Sbjct: 226 QQPPPASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLP 285
Query: 53 STQTPSPPCQAFNHYLSAMASMRQA 77
S TP P Q N+ L++ A+ A
Sbjct: 286 SPLTPPNPLQLVNNPLASQAAAAAA 310
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 6 SDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQ 62
S ++S+ + QLQ ++ Q +P P S PQ AP + P+PP Q
Sbjct: 173 SSLNSQLQQLQLQLQQQQQQQQQQP--PPSTNQHPQPAPQAPSQSQQQPLQPTPPQQ 227
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 14 REGRQLQP---AERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQ 62
++ +Q QP + PQ P AP+ Q +P +P S Q P+P Q
Sbjct: 190 QQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQ 241
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 6 SDVSSECDRE---GRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSP 59
+++ + C R R+ + E+PPQL P + TEPQ +P+P
Sbjct: 458 AEIQNGCKRNLVLAREREEKEQPPQLSASMPETTATEPQPDDEPAAGVQNGAPSPAP 514
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 6 SDVSSECDRE---GRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSP 59
+++ + C R R+ + E+PPQL P + TEPQ +P+P
Sbjct: 458 AEIQNGCKRNLVLAREREEKEQPPQLSASMPETTATEPQPDDEPAAGVQNGAPSPAP 514
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 6 SDVSSECDRE---GRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSP 59
+++ + C R R+ + E+PPQL P + TEPQ +P+P
Sbjct: 458 AEIQNGCKRNLVLAREREEKEQPPQLSASMPETTATEPQPDDEPAAGVQNGAPSPAP 514
>gi|148368962 NKF3 kinase family member [Homo sapiens]
Length = 1746
Score = 31.2 bits (69), Expect = 0.28
Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 27/121 (22%)
Query: 4 QPSDVSSECDREGRQLQPAERPPQLRP--GAPTSLQTEPQDRSPAPMSCDKSTQTPSPPC 61
QPS + ++ P ++P +P+ L T PQ PAP +ST +P
Sbjct: 824 QPSGEAEAPQTTDSPTTKVQKDPSIKPVTPSPSKLVTSPQSEPPAPFPPPRSTSSPYHAG 883
Query: 62 QAFNHYL----------------SAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYAR 105
+ S + S AD +P+ WI+ F +++ R
Sbjct: 884 NLLQRHFTNWTKPTSPTRSTEAESVLHSEGSRRAADAKPKRWIS---------FKSFFRR 934
Query: 106 R 106
R
Sbjct: 935 R 935
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 30.8 bits (68), Expect = 0.37
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNH 66
G Q Q RPP R G P+ RSP S + TQ P PP ++ H
Sbjct: 285 GPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQ-PGPPLESTFH 334
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 30.8 bits (68), Expect = 0.37
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 2 AKQPSDVSSECDREGRQ--LQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPS 58
+KQP SS R+GR L+ PP P AP + P R P P K T S
Sbjct: 95 SKQPPPASSPTKRKGRSRALEAVPAPPASGPRAPA--KESPPKRVPDPSPVTKGTAAES 151
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 30.4 bits (67), Expect = 0.49
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 10 SECDREGRQLQPAERPPQLRPGAPTS--LQTEPQDRSPAPMSCDKSTQTPS----PPCQ 62
S+C+ EGR+ +P E +PGA EPQ P + C + Q PS PP Q
Sbjct: 952 SDCEHEGRKYEPGE---SFQPGADPCEVCICEPQPEGPPSLRCHR-RQCPSLVGCPPSQ 1006
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.4 bits (67), Expect = 0.49
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 3 KQPSDVSSECDREGRQ---LQPAERPPQL----RPGAPTSLQTEPQDRSPAPMSCDKSTQ 55
KQPS + D++ ++ +P+ P + P APT L E SP P++ +Q
Sbjct: 329 KQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQ 388
Query: 56 TP-SPPCQA 63
P +PP +A
Sbjct: 389 EPVNPPSEA 397
Score = 28.1 bits (61), Expect = 2.4
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 5 PSDVSSECDREGRQLQP-AERPPQLRPGAPTSLQTEPQDRSPA------PMSCDKSTQTP 57
P+ +R G QP A P P P S + +DRSP P S + P
Sbjct: 364 PAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPP 423
Query: 58 SP-PCQAFNHYLSAMASMRQAEPADMRPEI 86
SP P + H S+ S + A EI
Sbjct: 424 SPQPTKVSRHASSSPESPKPAPAPGSHREI 453
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 30.0 bits (66), Expect = 0.63
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 26 PQLRPGAPTSLQTEPQDRSPAPMSCD--KSTQTPSPPCQAFNHYLSAMASMRQAEPADMR 83
P+ +P +P L EPQ S AP C S TP PP + PA+
Sbjct: 1494 PRSKPASP-KLSPEPQTPSLAPAKCSAPSSAVTPVPPASLLGSGTKPQVGLTSRCPAEAV 1552
Query: 84 P 84
P
Sbjct: 1553 P 1553
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 30.0 bits (66), Expect = 0.63
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 13 DREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTP 57
DR+GRQ P + Q +P AP Q + Q + P + Q P
Sbjct: 914 DRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQP 958
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 0.63
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 13 DREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTP 57
DR+GRQ P + Q +P AP Q + Q + P + Q P
Sbjct: 921 DRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQP 965
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 30.0 bits (66), Expect = 0.63
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 13 DREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTP 57
DR+GRQ P + Q +P AP Q + Q + P + Q P
Sbjct: 936 DRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQP 980
>gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo
sapiens]
Length = 747
Score = 30.0 bits (66), Expect = 0.63
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP 60
M K P++ + EG + A RPP+L PG L+ P P M+ + + P
Sbjct: 585 MMKSPTNTTPHVPAEGPE---ASRPPKLHPG----LRAAPGQEPPEHMAELQRNEQEQPL 637
Query: 61 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIG 96
Q A++ AE + +W E+RR+G
Sbjct: 638 GQWHLSKRDTGAAL-LAESRAEKNRLWGPLEVRRVG 672
>gi|26051231 lactamase, beta isoform a [Homo sapiens]
Length = 547
Score = 30.0 bits (66), Expect = 0.63
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 17 RQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPC 61
R PA+ P P A + L PQ++S AP S QTP+PPC
Sbjct: 61 RGAAPAQSPAAPDPEA-SPLAEPPQEQSLAPWS----PQTPAPPC 100
>gi|26051233 lactamase, beta isoform b [Homo sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 0.63
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 17 RQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPC 61
R PA+ P P A + L PQ++S AP S QTP+PPC
Sbjct: 61 RGAAPAQSPAAPDPEA-SPLAEPPQEQSLAPWS----PQTPAPPC 100
>gi|224282174 DH and coiled-coil domain-containing protein [Homo
sapiens]
Length = 844
Score = 29.6 bits (65), Expect = 0.83
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEP--QDRSPAPMSCDKSTQTPS 58
MAK ++S+C G+ P P +R T + +E Q AP S T
Sbjct: 460 MAKLYKGLASQCANAGQDASPTAGPEAVR---DTGIHSEELLQPYPSAPSSGPAITHL-M 515
Query: 59 PPCQAFNHYLSAMASMRQAEPADMRPE 85
PP + S M SM+ +P+D E
Sbjct: 516 PPVKKSQQQQSLMESMQPGKPSDWELE 542
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 29.6 bits (65), Expect = 0.83
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 25 PPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMAS 73
PPQ P AP + Q PQ ++ P Q +PP Q H L+ ++S
Sbjct: 345 PPQQPPQAPPAPQAPPQPQAAPPQ------QPAAPPQQPQAHTLTTLSS 387
>gi|42718017 retinoblastoma binding protein 8 isoform b [Homo
sapiens]
Length = 867
Score = 29.6 bits (65), Expect = 0.83
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 10 SECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFN 65
S C E R++ + PQ P L + D+S +PM+ T + +P +FN
Sbjct: 197 SVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHGTSSYTPDKSSFN 252
>gi|42718015 retinoblastoma binding protein 8 isoform a [Homo
sapiens]
Length = 897
Score = 29.6 bits (65), Expect = 0.83
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 10 SECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFN 65
S C E R++ + PQ P L + D+S +PM+ T + +P +FN
Sbjct: 197 SVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHGTSSYTPDKSSFN 252
>gi|4506441 retinoblastoma binding protein 8 isoform a [Homo
sapiens]
Length = 897
Score = 29.6 bits (65), Expect = 0.83
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 10 SECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFN 65
S C E R++ + PQ P L + D+S +PM+ T + +P +FN
Sbjct: 197 SVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHGTSSYTPDKSSFN 252
>gi|239582735 radial spoke head 4 homolog A isoform 2 [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 0.83
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 11 ECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSP 59
E R+ R +P PQ R P P+ SPAP+S + + +PSP
Sbjct: 50 ETGRQSRSSRPWS--PQSRAKTPLGGPAGPETSSPAPVSPREPSSSPSP 96
>gi|58219006 radial spoke head 4 homolog A isoform 1 [Homo
sapiens]
Length = 716
Score = 29.6 bits (65), Expect = 0.83
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 11 ECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSP 59
E R+ R +P PQ R P P+ SPAP+S + + +PSP
Sbjct: 50 ETGRQSRSSRPWS--PQSRAKTPLGGPAGPETSSPAPVSPREPSSSPSP 96
>gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 0.83
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 23 ERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQAEPADM 82
ERP + GA +E DR P+ K + P PP A N +SA A A A M
Sbjct: 139 ERPRKPEAGAQDFRDSERTDRDCQPLRV-KDSPHPCPPPGAPNSLVSAAARALDAGAAAM 197
Query: 83 RP 84
P
Sbjct: 198 AP 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,400,555
Number of Sequences: 37866
Number of extensions: 325609
Number of successful extensions: 2559
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 2279
Number of HSP's gapped (non-prelim): 435
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.