Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 56549683
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
(276 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens] 564 e-161
gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens] 534 e-152
gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II, pol... 354 4e-98
gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II, pol... 353 1e-97
gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa... 322 3e-88
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po... 156 2e-38
gi|219555649 dullard homolog [Homo sapiens] 148 4e-36
gi|31542547 dullard homolog [Homo sapiens] 148 4e-36
gi|48526509 translocase of inner mitochondrial membrane 50 homol... 80 2e-15
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 45 5e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 45 5e-05
gi|24430141 fibrillin 1 precursor [Homo sapiens] 34 0.12
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 30 1.8
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 30 2.3
gi|7669518 neuregulin 1 isoform SMDF [Homo sapiens] 29 5.1
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 29 5.1
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 29 5.1
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 28 6.7
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 28 6.7
gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member... 28 6.7
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho... 28 6.7
gi|55750053 atrophin-1 [Homo sapiens] 28 6.7
gi|55750041 atrophin-1 [Homo sapiens] 28 6.7
gi|24797106 UBX domain containing 8 [Homo sapiens] 28 6.7
gi|63055059 SH3 and PX domains 2B [Homo sapiens] 28 8.7
gi|11527402 integral membrane protein 2B [Homo sapiens] 28 8.7
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 28 8.7
>gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
Length = 276
Score = 564 bits (1454), Expect = e-161
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
Sbjct: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
Query: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120
SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS
Sbjct: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120
Query: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180
SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD
Sbjct: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180
Query: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240
LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS
Sbjct: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240
Query: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR 276
WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
Sbjct: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR 276
>gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
Length = 265
Score = 534 bits (1375), Expect = e-152
Identities = 265/276 (96%), Positives = 265/276 (96%), Gaps = 11/276 (3%)
Query: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
Sbjct: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
Query: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120
SSPSVLPPLVEENGGLQK PPAKYLLPEVTVLDYGKKCVVIDLDETLVHS
Sbjct: 61 SSPSVLPPLVEENGGLQK-----------PPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 109
Query: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180
SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD
Sbjct: 110 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 169
Query: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240
LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS
Sbjct: 170 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 229
Query: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR 276
WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
Sbjct: 230 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR 265
>gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 2 [Homo
sapiens]
Length = 260
Score = 354 bits (909), Expect = 4e-98
Identities = 183/272 (67%), Positives = 211/272 (77%), Gaps = 17/272 (6%)
Query: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
MD A+ITQ++ +E G L G G++ S + +K RSR IL S FCC + EA P
Sbjct: 1 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56
Query: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120
S + P LVEENG IP P +YLLPE D K CVVIDLDETLVHS
Sbjct: 57 HSGA--PLLVEENGA-----------IPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHS 103
Query: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180
SFKP++NADFI+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVAD
Sbjct: 104 SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD 163
Query: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240
LLD+WG FRARLFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV S
Sbjct: 164 LLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVAS 223
Query: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHR 272
WFD+M+DTEL DL+PFFE LSR DDVYS+L +
Sbjct: 224 WFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 255
>gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 1 [Homo
sapiens]
Length = 261
Score = 353 bits (905), Expect = 1e-97
Identities = 182/272 (66%), Positives = 211/272 (77%), Gaps = 16/272 (5%)
Query: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
MD A+ITQ++ +E G L G G++ S + +K RSR IL S FCC + EA P
Sbjct: 1 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56
Query: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120
S + P LVEENG + K P +YLLPE D K CVVIDLDETLVHS
Sbjct: 57 HSGA--PLLVEENGAIPK----------QTPVQYLLPEAKAQDSDKICVVIDLDETLVHS 104
Query: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180
SFKP++NADFI+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVAD
Sbjct: 105 SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD 164
Query: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240
LLD+WG FRARLFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV S
Sbjct: 165 LLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVAS 224
Query: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHR 272
WFD+M+DTEL DL+PFFE LSR DDVYS+L +
Sbjct: 225 WFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 256
>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
sapiens]
Length = 271
Score = 322 bits (824), Expect = 3e-88
Identities = 177/275 (64%), Positives = 202/275 (73%), Gaps = 9/275 (3%)
Query: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
M+ +IITQ +ED L G + S KK R R+I + FCCFR +V
Sbjct: 1 MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHVGQS-- 53
Query: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIP--SPPAKYLLPEVTVLDYGKKCVVIDLDETLV 118
SS + L EE + K D Q + P LLPEVT D G+ CVVIDLDETLV
Sbjct: 54 SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV 113
Query: 119 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV 178
HSSFKPI+NADFIVP+EI+GT HQVYVLKRP+VDEFL+RMG+LFECVLFTASLAKYADPV
Sbjct: 114 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV 173
Query: 179 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV 238
DLLDR GVFRARLFRESCVFH+G YVKDLSRLGR+L K +I+DNSPASYIFHPENAVPV
Sbjct: 174 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV 233
Query: 239 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRL 273
QSWFDDM DTELL+LIP FE LS +DVY+ L +L
Sbjct: 234 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQL 268
>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase like 2 [Homo sapiens]
Length = 466
Score = 156 bits (394), Expect = 2e-38
Identities = 79/153 (51%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 109 VVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFT 168
+V+DLDETLVH S + +A PV I+QVYV RP EFL+RM Q++E +LFT
Sbjct: 290 LVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFT 349
Query: 169 ASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPAS 227
AS YAD + ++LD + + R RLFRE CV +GNY+KDL+ LGR+LSK II+DNSP +
Sbjct: 350 ASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQA 409
Query: 228 YIFHPENAVPVQSWFDDMTDTELLDLIPFFEGL 260
+ + N +P++SWF D D ELL LIPF E L
Sbjct: 410 FAYQLSNGIPIESWFMDKNDNELLKLIPFLEKL 442
>gi|219555649 dullard homolog [Homo sapiens]
Length = 244
Score = 148 bits (374), Expect = 4e-36
Identities = 82/198 (41%), Positives = 124/198 (62%), Gaps = 15/198 (7%)
Query: 84 VIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS--------SFKPISNADFIVPVE 135
++P+ SP ++ L +V +K +V+DLDETL+HS + +P + DFI+ V
Sbjct: 45 ILPL-SPVSRNRLAQVK-----RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVV 98
Query: 136 IDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRW-GVFRARLFR 194
ID + +V KRPHVD FL+ + Q +E V+FTAS+ Y VAD LD + + R +R
Sbjct: 99 IDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYR 158
Query: 195 ESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLI 254
+ C G+Y+KDLS + +LS ++I+DNSP +Y HP+NA+P++SWF D +DT LL+L+
Sbjct: 159 QHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLL 218
Query: 255 PFFEGLSREDDVYSMLHR 272
P + L DV S+L R
Sbjct: 219 PMLDALRFTADVRSVLSR 236
>gi|31542547 dullard homolog [Homo sapiens]
Length = 244
Score = 148 bits (374), Expect = 4e-36
Identities = 82/198 (41%), Positives = 124/198 (62%), Gaps = 15/198 (7%)
Query: 84 VIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS--------SFKPISNADFIVPVE 135
++P+ SP ++ L +V +K +V+DLDETL+HS + +P + DFI+ V
Sbjct: 45 ILPL-SPVSRNRLAQVK-----RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVV 98
Query: 136 IDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRW-GVFRARLFR 194
ID + +V KRPHVD FL+ + Q +E V+FTAS+ Y VAD LD + + R +R
Sbjct: 99 IDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYR 158
Query: 195 ESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLI 254
+ C G+Y+KDLS + +LS ++I+DNSP +Y HP+NA+P++SWF D +DT LL+L+
Sbjct: 159 QHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLL 218
Query: 255 PFFEGLSREDDVYSMLHR 272
P + L DV S+L R
Sbjct: 219 PMLDALRFTADVRSVLSR 236
>gi|48526509 translocase of inner mitochondrial membrane 50 homolog
[Homo sapiens]
Length = 456
Score = 80.1 bits (196), Expect = 2e-15
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 21/195 (10%)
Query: 80 DQRQVIPIPSPPAKYLLPEVTVLDYGKK--CVVIDLDETLVHSSFKPISNADFIVPVEID 137
D RQ+I P+ P LLP+ Y + +V++L L+H + + F
Sbjct: 224 DYRQMIIEPTSPC--LLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRF------- 274
Query: 138 GTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESC 197
KRP ++ Q++ L+E V+FT+ A P+ D +D G RLFR++
Sbjct: 275 --------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 326
Query: 198 VFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFF 257
+ G++VKD+S L R+ ++V++VD ++ P N V ++ W + D LLDL F
Sbjct: 327 RYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFL 386
Query: 258 E--GLSREDDVYSML 270
+ L+ +DV ++L
Sbjct: 387 KTIALNGVEDVRTVL 401
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 45.4 bits (106), Expect = 5e-05
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 106 KKCVVIDLDETLVHSS---FKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLF 162
K +++DLD+TL+H++ + +SN I ++ ++ RPH +FL+++ +L+
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKG-IFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240
Query: 163 ECVLFTASLAKYADPVADLLD-RWGVFRAR-LFRESCV--FHRGNYVKDLSRLGRELSKV 218
E +FT YA +A LD +F R L R+ C+ F + +++L G S V
Sbjct: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGD--SMV 298
Query: 219 IIVDNSPASYIFHPENAVPVQSW 241
I+D+ + F P N + V+ +
Sbjct: 299 CIIDDREDVWKFAP-NLITVKKY 320
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 45.4 bits (106), Expect = 5e-05
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 106 KKCVVIDLDETLVHSS---FKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLF 162
K +++DLD+TL+H++ + +SN I ++ ++ RPH +FL+++ +L+
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKG-IFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240
Query: 163 ECVLFTASLAKYADPVADLLD-RWGVFRAR-LFRESCV--FHRGNYVKDLSRLGRELSKV 218
E +FT YA +A LD +F R L R+ C+ F + +++L G S V
Sbjct: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGD--SMV 298
Query: 219 IIVDNSPASYIFHPENAVPVQSW 241
I+D+ + F P N + V+ +
Sbjct: 299 CIIDDREDVWKFAP-NLITVKKY 320
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 34.3 bits (77), Expect = 0.12
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 58 PPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPE--------VTVLDY 104
PPP P +PP++ G G Q IP+P PP +YL P V V DY
Sbjct: 403 PPPLGP--IPPVLPVPPGFPPGPQ---IPVPRPPVEYLYPSREPPRVLPVNVTDY 452
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 30.4 bits (67), Expect = 1.8
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 70 VEENGGLQKGDQRQVIPIPSPPAKYLL-PEVTVLDYGKKCVVIDLDETLVHSSFKPISNA 128
+EE G + ++ + + +P P K L P +T L +++ L T S K
Sbjct: 698 IEELEGAAEPEEEEAVGMPKPLQKVLADPRLTALQRDGGAILMRLRST---PSSKLEGQG 754
Query: 129 DFIVPVEIDGTIHQVYVLKRPHVDEFLQR 157
+ E+D IHQ+ L HV + QR
Sbjct: 755 PATLYQEVDEAIHQLVRLSNLHVQQQEQR 783
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 30.0 bits (66), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 57 APPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPP 91
APP +SPSV + ++ K QR +P P PP
Sbjct: 710 APPLASPSVFTSTLSKSRPTPKPRQRPTLPPPQPP 744
>gi|7669518 neuregulin 1 isoform SMDF [Homo sapiens]
Length = 296
Score = 28.9 bits (63), Expect = 5.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCC 49
+DG + P+ ++GR PG A C L+ +R R L+S C
Sbjct: 29 LDGLPAAEDMPEPQTEDGRTPGLVGLAVPCCACLEAERLRGCLNSEKIC 77
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 28.9 bits (63), Expect = 5.1
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 56 EAPPPSSPSVLPPLVEENGGLQKGDQRQV-IPIPSPPAKYLLP 97
E PP P P L E + G++ +V P P PP K P
Sbjct: 4481 ELPPEPEPEPEPELEPEKADAENGEKEEVPEPTPEPPKKQAPP 4523
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 28.9 bits (63), Expect = 5.1
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 56 EAPPPSSPSVLPPLVEENGGLQKGDQRQV-IPIPSPPAKYLLP 97
E PP P P L E + G++ +V P P PP K P
Sbjct: 4486 ELPPEPEPEPEPELEPEKADAENGEKEEVPEPTPEPPKKQAPP 4528
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 12 NPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVE 71
N K RL G ++ N+ +R + L D N++ P LPP +
Sbjct: 407 NIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSAD 466
Query: 72 ENGGLQKGDQRQVIPIP--SPPA 92
+N L+ +RQ+ P+P +PP+
Sbjct: 467 DN--LKTPSERQLTPLPPSAPPS 487
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 12 NPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVE 71
N K RL G ++ N+ +R + L D N++ P LPP +
Sbjct: 904 NIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSAD 963
Query: 72 ENGGLQKGDQRQVIPIP--SPPA 92
+N L+ +RQ+ P+P +PP+
Sbjct: 964 DN--LKTPSERQLTPLPPSAPPS 984
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 12 NPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVE 71
N K RL G ++ N+ +R + L D N++ P LPP +
Sbjct: 369 NIKTTAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAEHLRGPLPPSAD 428
Query: 72 ENGGLQKGDQRQVIPIP--SPPA 92
+N L+ +RQ+ P+P +PP+
Sbjct: 429 DN--LKTPSERQLTPLPPSAPPS 449
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 12 NPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVE 71
N K RL G ++ N+ +R + L D N++ P LPP +
Sbjct: 453 NIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAEHLRGPLPPSAD 512
Query: 72 ENGGLQKGDQRQVIPIP--SPPA 92
+N L+ +RQ+ P+P +PP+
Sbjct: 513 DN--LKTPSERQLTPLPPSAPPS 533
>gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member 11
[Homo sapiens]
Length = 1321
Score = 28.5 bits (62), Expect = 6.7
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 63 PSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLL--PEVTVLDYGKKCVVIDLDETLVHS 120
P LV E GG G Q+Q + I A+ L+ P++ +LD + + E +V
Sbjct: 545 PQQFDTLVGEGGGQMSGGQKQRVAI----ARALIRNPKILLLDMATSALDNE-SEAMVQE 599
Query: 121 SFKPISNADFIVPV-----------EIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTA 169
I + I+ V I G H V + H +E L+R G F V +
Sbjct: 600 VLSKIQHGHTIISVAHRLSTVRAADTIIGFEHGTAVERGTH-EELLERKGVYFTLVTLQS 658
Query: 170 --SLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPAS 227
+ A + + D + + R F RG+Y L R+ SK S S
Sbjct: 659 QGNQALNEEDIKDATEDDMLAR--------TFSRGSYQDSLRASIRQRSK------SQLS 704
Query: 228 YIFH 231
Y+ H
Sbjct: 705 YLVH 708
>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
sapiens]
Length = 678
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 12 NPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVE 71
N K RL G ++ N+ +R + L D N++ P LPP +
Sbjct: 407 NIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSAD 466
Query: 72 ENGGLQKGDQRQVIPIP--SPPA 92
+N L+ +RQ+ P+P +PP+
Sbjct: 467 DN--LKTPSERQLTPLPPSAPPS 487
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 12 NPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVE 71
N K RL G ++ N+ +R + L D N++ P LPP +
Sbjct: 449 NIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSAD 508
Query: 72 ENGGLQKGDQRQVIPIP--SPPA 92
+N L+ +RQ+ P+P +PP+
Sbjct: 509 DN--LKTPSERQLTPLPPSAPPS 529
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 28.5 bits (62), Expect = 6.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 58 PPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLD 103
PPP++P+ PPL + ++ + P PPA+ P V+D
Sbjct: 710 PPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVD 755
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 28.5 bits (62), Expect = 6.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 58 PPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLD 103
PPP++P+ PPL + ++ + P PPA+ P V+D
Sbjct: 710 PPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVD 755
>gi|24797106 UBX domain containing 8 [Homo sapiens]
Length = 445
Score = 28.5 bits (62), Expect = 6.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 172 AKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVII 220
++ DPV D++ F + R VF++G Y + L+ REL +++
Sbjct: 127 SRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLV 175
>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
Length = 911
Score = 28.1 bits (61), Expect = 8.7
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 51 RDYNVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVV 110
R + P P P V+ P++ D R+ P P + L D G +C
Sbjct: 545 RTEQLRGPTPKPPGVILPMMPAKHIPPARDSRRPEPKPDKSRLFQLKN----DMGLECGH 600
Query: 111 IDLDETLVHSSFKPISNADFIVPVE-IDGTIHQVYVLKRPHV 151
L + + + +PIS + +P E D T ++ RP V
Sbjct: 601 KVLAKEVKKPNLRPISKSKTDLPEEKPDATPQNPFLKSRPQV 642
>gi|11527402 integral membrane protein 2B [Homo sapiens]
Length = 266
Score = 28.1 bits (61), Expect = 8.7
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 52 DYNVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGK----- 106
D + P +P+ L +EEN + + ++ + I +P P P V D+ K
Sbjct: 97 DVILNEPSADAPAALYQTIEENIKIFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAY 156
Query: 107 ------KCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVL 146
KC VI L+ ++V P + + ++ ++ + Q Y++
Sbjct: 157 LDLNLDKCYVIPLNTSIV---MPPRNLLELLINIKAGTYLPQSYLI 199
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 28.1 bits (61), Expect = 8.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 58 PPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKK 107
PPP PS PP +G L Q+Q P P PP + T L + ++
Sbjct: 480 PPPPPPSGQPP-PPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQR 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,897,775
Number of Sequences: 37866
Number of extensions: 581923
Number of successful extensions: 1882
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 50
length of query: 276
length of database: 18,247,518
effective HSP length: 101
effective length of query: 175
effective length of database: 14,423,052
effective search space: 2524034100
effective search space used: 2524034100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.