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Search of human proteins with 55770866
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770866 transmembrane protein 31 [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770866 transmembrane protein 31 [Homo sapiens] 339 6e-94
gi|146219841 PNMA-like 2 [Homo sapiens] 33 0.088
gi|239755394 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|239744215 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 32 0.20
gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [H... 32 0.33
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 31 0.44
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 31 0.44
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 31 0.44
gi|166235173 solute carrier family 44, member 3 isoform 1 [Homo ... 31 0.57
gi|166235171 solute carrier family 44, member 3 isoform 2 [Homo ... 31 0.57
gi|190684675 X-ray repair cross complementing protein 1 [Homo sa... 30 0.75
gi|83415174 hypothetical protein LOC400818 [Homo sapiens] 30 0.75
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 30 0.97
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 30 0.97
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 30 1.3
gi|189491748 ataxin 1 [Homo sapiens] 29 2.2
gi|51479158 ataxin 1 [Homo sapiens] 29 2.2
gi|111378393 sodium channel, voltage-gated, type VII, alpha [Hom... 29 2.2
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens] 28 2.8
gi|33286444 mastermind-like 2 [Homo sapiens] 28 2.8
gi|148746195 trichohyalin [Homo sapiens] 28 2.8
gi|40354197 THAP domain containing 11 [Homo sapiens] 28 2.8
gi|23308553 spermatogenesis associated 13 [Homo sapiens] 28 2.8
gi|19923268 protein-kinase, interferon-inducible double stranded... 28 2.8
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 28 2.8
gi|7657017 hypothetical protein LOC25832 [Homo sapiens] 28 2.8
gi|29789405 hypothetical protein LOC284565 [Homo sapiens] 28 2.8
gi|148368962 NKF3 kinase family member [Homo sapiens] 28 2.8
gi|157266285 hypothetical protein LOC728936 [Homo sapiens] 28 2.8
>gi|55770866 transmembrane protein 31 [Homo sapiens]
Length = 168
Score = 339 bits (870), Expect = 6e-94
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MRLTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTP 60
MRLTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTP
Sbjct: 1 MRLTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTP 60
Query: 61 TTSSDRTINLLEVLPWPTEWIFNPYRLPALFELYPEFLLVFKEAFHDISHCLKAQMEKIG 120
TTSSDRTINLLEVLPWPTEWIFNPYRLPALFELYPEFLLVFKEAFHDISHCLKAQMEKIG
Sbjct: 61 TTSSDRTINLLEVLPWPTEWIFNPYRLPALFELYPEFLLVFKEAFHDISHCLKAQMEKIG 120
Query: 121 LPIILHLFALSTLYFYKFFLPTILSLSFFILLVLLLLLFIIVFILIFF 168
LPIILHLFALSTLYFYKFFLPTILSLSFFILLVLLLLLFIIVFILIFF
Sbjct: 121 LPIILHLFALSTLYFYKFFLPTILSLSFFILLVLLLLLFIIVFILIFF 168
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 33.5 bits (75), Expect = 0.088
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 7 SEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTPTTSSDR 66
+EG ++ S +ED E E + E + R +RA T P R P+ PT S R
Sbjct: 500 NEGSEEASDEQSEEESEDTESEASEPEDRASRKPRAKRARTAP-RGLTPAGAPPTASGAR 558
>gi|239755394 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 32.7 bits (73), Expect = 0.15
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 8 EGEQQLKPNN---SNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTPTTSS 64
EG Q+ P SN +++EE+ Q +H P R++ RA +P+R L T
Sbjct: 50 EGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQ-GRAQARPARSPLRPAATACKGD 108
Query: 65 DR 66
DR
Sbjct: 109 DR 110
>gi|239744215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 32.7 bits (73), Expect = 0.15
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 8 EGEQQLKPNN---SNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTPTTSS 64
EG Q+ P SN +++EE+ Q +H P R++ RA +P+R L T
Sbjct: 50 EGRQRKSPLRTLRSNQEEQEEEEDEQNGRRHQPGRKQ-GRAQARPARSPLRPAATACKGD 108
Query: 65 DR 66
DR
Sbjct: 109 DR 110
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 32.3 bits (72), Expect = 0.20
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 7 SEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRAD-----TQPSRCRLPS 56
S+ ++Q K S+ + D+ + SE +P R R QR+D QPSR R PS
Sbjct: 1043 SDEDEQRKKCASSESDSDENQNKSGSEAGSPRRPRRQRSDQDSDSDQPSRKRRPS 1097
>gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [Homo
sapiens]
Length = 1447
Score = 31.6 bits (70), Expect = 0.33
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 4 TEKSEGEQQLKPNNSNAPNEDQEEEIQ--------QSEQHTPARQRTQRADTQPSRCRLP 55
T K+ + K + AP E++EEE Q +S+QH +R+ QRA++ S
Sbjct: 1307 TMKTSKKGSKKKSGPPAPEEEEEEERQSGNTEQKSKSKQHRVSRRAQQRAESPESSAIES 1366
Query: 56 SRRTPTTSSDR 66
++ TP R
Sbjct: 1367 TQSTPQKGRGR 1377
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 31.2 bits (69), Expect = 0.44
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 5 EKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQ---RTQRADTQPSRCRLPSRRTPT 61
EK + E++ K + S+ +E+ EE+ +SE T + A+T ++ + TPT
Sbjct: 253 EKVDEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPT 312
Query: 62 TSSDRTINLLEVLPWPT 78
SS + + +PT
Sbjct: 313 VSSGQATPTSPIKKFPT 329
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 0.44
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 5 EKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQ---RTQRADTQPSRCRLPSRRTPT 61
EK + E++ K + S+ +E+ EE+ +SE T + A+T ++ + TPT
Sbjct: 340 EKVDEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPT 399
Query: 62 TSSDRTINLLEVLPWPT 78
SS + + +PT
Sbjct: 400 VSSGQATPTSPIKKFPT 416
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 0.44
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 5 EKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQ---RTQRADTQPSRCRLPSRRTPT 61
EK + E++ K + S+ +E+ EE+ +SE T + A+T ++ + TPT
Sbjct: 340 EKVDEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPT 399
Query: 62 TSSDRTINLLEVLPWPT 78
SS + + +PT
Sbjct: 400 VSSGQATPTSPIKKFPT 416
>gi|166235173 solute carrier family 44, member 3 isoform 1 [Homo
sapiens]
Length = 653
Score = 30.8 bits (68), Expect = 0.57
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 62 TSSDRTINLLEVLPWPTEWIFNPY-----RLPALFELYPEFLLVFKEAFHDI-SHCLKAQ 115
T S + +L LP P F + + P + L+ L+ + H I S + +
Sbjct: 153 THSPKADSLCPRLPVPPSKSFPLFNRCVPQTPECYSLFASVLINDVDTLHRILSGIMSGR 212
Query: 116 MEKIGLPIILHLFALSTLYFYKFFLPTILSLSFFILLVLLLLLFI 160
+GL I+ +L+ ++ ++F T L + FI LV+L LLF+
Sbjct: 213 DTILGLCILALALSLAMMFTFRFI--TTLLVHIFISLVILGLLFV 255
>gi|166235171 solute carrier family 44, member 3 isoform 2 [Homo
sapiens]
Length = 605
Score = 30.8 bits (68), Expect = 0.57
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 62 TSSDRTINLLEVLPWPTEWIFNPY-----RLPALFELYPEFLLVFKEAFHDI-SHCLKAQ 115
T S + +L LP P F + + P + L+ L+ + H I S + +
Sbjct: 105 THSPKADSLCPRLPVPPSKSFPLFNRCVPQTPECYSLFASVLINDVDTLHRILSGIMSGR 164
Query: 116 MEKIGLPIILHLFALSTLYFYKFFLPTILSLSFFILLVLLLLLFI 160
+GL I+ +L+ ++ ++F T L + FI LV+L LLF+
Sbjct: 165 DTILGLCILALALSLAMMFTFRFI--TTLLVHIFISLVILGLLFV 207
>gi|190684675 X-ray repair cross complementing protein 1 [Homo
sapiens]
Length = 633
Score = 30.4 bits (67), Expect = 0.75
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 14 KPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPS-RRTPTTS 63
KP S P ++ ++ Q E+ TP++ Q + + P R +LP+ RTP T+
Sbjct: 237 KPQES--PKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATA 285
>gi|83415174 hypothetical protein LOC400818 [Homo sapiens]
Length = 942
Score = 30.4 bits (67), Expect = 0.75
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 11 QQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRAD 46
Q+L P N N NED + E+ + Q + A + Q+A+
Sbjct: 431 QKLSPENDNDDNEDVQVEVAEKVQKSSAPREMQKAE 466
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.0 bits (66), Expect = 0.97
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 123 IILHLFALSTLYFYKFFLPTILSLSFFILLVLLLL--LFIIVFILIF 167
++LHL L L FL + FF+LL L LL LF+ +FI +F
Sbjct: 125 LLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLF 171
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 30.0 bits (66), Expect = 0.97
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 123 IILHLFALSTLYFYKFFLPTILSLSFFILLVLLLL--LFIIVFILIF 167
++LHL L L FL + FF+LL L LL LF+ +FI +F
Sbjct: 125 LLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLF 171
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 2 RLTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTPT 61
R+ + S GE+ + S D++ + ++ E+ T R++ PSRCR S+ +
Sbjct: 897 RVKDSSPGEKSR--SQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSF 954
Query: 62 TSSDRTINLLEVLPWPTEWIFNPYRLP 88
DR W W + +R P
Sbjct: 955 GRIDRDSYSPR---WKGRWANDGWRCP 978
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 6 KSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRT 59
K+E + K + S +P +D E +QS+ +P R T+ +++ S P R T
Sbjct: 836 KNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTR--ESRRSESLSPRRET 887
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 9 GEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTP 60
G P + + Q+++ QQ QH +Q+ Q+ Q R P TP
Sbjct: 185 GSLSQTPGHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITP 236
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 9 GEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSRRTP 60
G P + + Q+++ QQ QH +Q+ Q+ Q R P TP
Sbjct: 185 GSLSQTPGHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITP 236
>gi|111378393 sodium channel, voltage-gated, type VII, alpha [Homo
sapiens]
Length = 1682
Score = 28.9 bits (63), Expect = 2.2
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 116 MEKIGLPIILHLFALST--LYFYKFFLPTILSLSFFILLVLLLLLFIIVFILIFF 168
++ I L I+H+ L F+ LP +LSL LL ++LL+F+++FI F
Sbjct: 1345 VQLILLSRIIHMLRLGKGPKVFHNLMLPLMLSLP--ALLNIILLIFLVMFIYAVF 1397
>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
Length = 3628
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 11 QQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRAD 46
Q+L P N N +ED + E+ + Q + A + Q+A+
Sbjct: 431 QKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAE 466
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 10 EQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPS 50
+QQ + +S + + Q+++ QQ +Q +Q+ Q+ QPS
Sbjct: 627 QQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQPS 667
Score = 27.7 bits (60), Expect = 4.8
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 3 LTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLPSR 57
++ + + +QQ + + Q+++ QQ +Q +Q+ Q+ +QP++ LPS+
Sbjct: 624 ISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQ-SLPSQ 677
Score = 27.3 bits (59), Expect = 6.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 10 EQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQP 49
+QQ + + Q+++ QQ +Q P+ Q Q +QP
Sbjct: 639 QQQQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQSLPSQP 678
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 2 RLTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSR 51
RL ++ EQ+LK P E++ +++ +SE+ RQ+ R + Q R
Sbjct: 609 RLEQEERREQRLKREE---PEEERRQQLLKSEEQEERRQQQLRREQQERR 655
Score = 27.7 bits (60), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 10 EQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQR 44
EQQL+P + +EE++Q EQ RQ R
Sbjct: 1809 EQQLRPQQRDGKYRWEEEQLQLEEQEQRLRQERDR 1843
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 6 KSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPS 50
+ + +QQ + + Q+++ QQ +Q +P+ Q A QP+
Sbjct: 104 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSPSASTAQTAQLQPN 148
>gi|23308553 spermatogenesis associated 13 [Homo sapiens]
Length = 652
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 10 EQQLKPNNSNAPNEDQEEEIQQS-EQHTPARQR 41
+++L N+S+ P+E+Q+EE QS +H +Q+
Sbjct: 207 QEELSENSSSTPSEEQDEEASQSRHRHCENKQQ 239
>gi|19923268 protein-kinase, interferon-inducible double stranded
RNA dependent inhibitor, repressor of (P58 repressor)
[Homo sapiens]
Length = 761
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 2 RLTEKSEGEQQLKP-NNSNAPNEDQEEEIQQSEQHTP 37
++ E SE EQ+ K NNSNA N +EE Q E P
Sbjct: 118 KIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILP 154
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 1 MRLTEKSEGEQQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRADTQPSRCRLP 55
+ L+++S E++ + + E++EEE ++ E+ + + + P R P
Sbjct: 1062 LELSKESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRLTKP 1116
>gi|7657017 hypothetical protein LOC25832 [Homo sapiens]
Length = 921
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 11 QQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRAD 46
Q+L P N N +ED + E+ + Q + A + Q+A+
Sbjct: 91 QKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAE 126
>gi|29789405 hypothetical protein LOC284565 [Homo sapiens]
Length = 670
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 11 QQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRAD 46
Q+L P N N +ED + E+ + Q + A + Q+A+
Sbjct: 160 QKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAE 195
>gi|148368962 NKF3 kinase family member [Homo sapiens]
Length = 1746
Score = 28.5 bits (62), Expect = 2.8
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 37 PARQRTQRADTQPSRCRLPSRRTPTTSSDRTINLLEVLPWPTEWIFNPYRLPALFELYPE 96
P + + A T P+ + S+ P S NL E+ FN Y + P
Sbjct: 561 PRKNCHKSAPTSPTATNISSKTIPVKSP----NLSEIK-------FNSYNNAGM----PP 605
Query: 97 FLLVFKEAFHDISHCLKAQMEKIGLPIILHLFALSTLYFYKFFLPTILSLS 147
F ++ HD ++ I +PI+++ A L YK FL T LS
Sbjct: 606 FPIII----HDEPTYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELS 652
>gi|157266285 hypothetical protein LOC728936 [Homo sapiens]
Length = 670
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 11 QQLKPNNSNAPNEDQEEEIQQSEQHTPARQRTQRAD 46
Q+L P N N +ED + E+ + Q + A + Q+A+
Sbjct: 160 QKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAE 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,464,402
Number of Sequences: 37866
Number of extensions: 308255
Number of successful extensions: 2683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2517
Number of HSP's gapped (non-prelim): 204
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.