Guide to the Human Genome
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Name: PNOC Sequence: fasta or formatted (176aa) NCBI GI: 5453922
Description:

prepronociceptin

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         12           3
 C cysteine            4.0          7           1
 D aspartate           2.3          4           1
 E glutamate           9.1         16           2
 F phenylalanine       5.1          9           1
 G glycine             3.4          6           2
 H histidine           2.3          4           1
 I isoleucine          0.6          1           1
 K lysine              5.1          9           1
 L leucine            12.5         22           4
 M methionine          4.5          8           1
 N asparagine          1.7          3           1
 P proline             5.7         10           1
 Q glutamine           8.5         15           1
 R arginine            8.5         15           3
 S serine              9.7         17           2
 T threonine           2.8          5           1
 V valine              5.1          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prepronociceptin 
PENK                  0.102   proenkephalin 
PENK                  0.102   proenkephalin 
PDYN                  0.030   beta-neoendorphin-dynorphin preproprotein 
SETD1A                0.024   SET domain containing 1A 
IVL                   0.018   involucrin 
PEG3                  0.015   paternally expressed 3 isoform 3 
PEG3                  0.015   paternally expressed 3 isoform 1 
PEG3                  0.015   paternally expressed 3 isoform 2 
PEG3                  0.015   paternally expressed 3 isoform 1 
PEG3                  0.015   paternally expressed 3 isoform 1 
AZI1                  0.015   5-azacytidine induced 1 isoform a 
USP34                 0.015   ubiquitin specific protease 34 
PAXIP1                0.015   PAX interacting protein 1 
ZNF773                0.012   zinc finger protein 773 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform b 
MINK1                 0.012   misshapen/NIK-related kinase isoform 4 
MINK1                 0.012   misshapen/NIK-related kinase isoform 2 
MINK1                 0.012   misshapen/NIK-related kinase isoform 3 
MINK1                 0.012   misshapen/NIK-related kinase isoform 1 
MCM5                  0.009   minichromosome maintenance complex component 5 [Homo...
LOC100292648          0.009   PREDICTED: similar to hCG2036828 
CNTNAP2               0.009   cell recognition molecule Caspr2 precursor 
EPPK1                 0.009   epiplakin 1 
MTIF2                 0.009   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.009   mitochondrial translational initiation factor 2 prec...
APOB48R               0.009   apolipoprotein B48 receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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