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Search of human proteins with 5453780
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453780 nuclear transcription factor Y, beta [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453780 nuclear transcription factor Y, beta [Homo sapiens] 413 e-116
gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens] 74 7e-14
gi|4503381 down-regulator of transcription 1 [Homo sapiens] 73 2e-13
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho... 32 0.50
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho... 32 0.50
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho... 32 0.50
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom... 32 0.50
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 31 0.65
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 0.65
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 0.65
gi|58530842 desmoplakin isoform II [Homo sapiens] 30 1.4
gi|58530840 desmoplakin isoform I [Homo sapiens] 30 1.4
gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] 30 1.4
gi|51479143 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.5
gi|51479141 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.5
gi|51479139 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.5
gi|51479137 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.5
gi|18644883 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.5
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 29 2.5
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 29 2.5
gi|186972143 tripeptidyl peptidase II [Homo sapiens] 29 2.5
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 28 5.5
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 28 5.5
gi|104485446 TBP-associated factor 8 [Homo sapiens] 27 9.4
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 27 9.4
gi|7657196 zinc finger protein 330 [Homo sapiens] 27 9.4
>gi|5453780 nuclear transcription factor Y, beta [Homo sapiens]
Length = 207
Score = 413 bits (1061), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP 60
MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP
Sbjct: 1 MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP 60
Query: 61 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILF 120
IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILF
Sbjct: 61 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILF 120
Query: 121 AMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLIT 180
AMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLIT
Sbjct: 121 AMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLIT 180
Query: 181 TDGQQQNVMVYTTSYQQISGVQQIQFS 207
TDGQQQNVMVYTTSYQQISGVQQIQFS
Sbjct: 181 TDGQQQNVMVYTTSYQQISGVQQIQFS 207
>gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens]
Length = 147
Score = 74.3 bits (181), Expect = 7e-14
Identities = 37/97 (38%), Positives = 57/97 (58%)
Query: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
R +D+ LP A + RI+K A+P I+K+A+ + S F+ + TS A+ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
+N D+L AM + F +V PLK L+ +R KG+K
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>gi|4503381 down-regulator of transcription 1 [Homo sapiens]
Length = 176
Score = 72.8 bits (177), Expect = 2e-13
Identities = 37/103 (35%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 48 SKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQ 107
+ S + D+ +P A + +++K +P ++A DA+E V C +EFI I+SEA+E C++
Sbjct: 2 ASSSGNDDDLTIPRAAINKMIKETLPNV-RVANDARELVVNCCTEFIHLISSEANEICNK 60
Query: 108 EKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE-AMKGEK 149
++KTI+ E ++ A+ +LGF SY+ +K LQ+ + A+K K
Sbjct: 61 SEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRK 103
>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
sapiens]
Length = 301
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 43 EDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS 102
E N + + FR Q+ LP+A + +IMK I+ +A + FI+ +T A
Sbjct: 29 EIRNLTVKDFRVQE--LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAW 85
Query: 103 ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLS 162
KR+T+ DI AM+ FD + + + + + K ++ + +VT
Sbjct: 86 IHTEDNKRRTLQRNDI--AMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPA---- 139
Query: 163 EELTEEAFTNQLPAGLITTDGQQQ 186
E + FT + GQQQ
Sbjct: 140 -EPVQYYFTLAQQPTAVQVQGQQQ 162
>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
sapiens]
Length = 354
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 43 EDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS 102
E N + + FR Q+ LP+A + +IMK I+ +A + FI+ +T A
Sbjct: 29 EIRNLTVKDFRVQE--LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAW 85
Query: 103 ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLS 162
KR+T+ DI AM+ FD + + + + + K ++ + +VT
Sbjct: 86 IHTEDNKRRTLQRNDI--AMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPA---- 139
Query: 163 EELTEEAFTNQLPAGLITTDGQQQ 186
E + FT + GQQQ
Sbjct: 140 -EPVQYYFTLAQQPTAVQVQGQQQ 162
>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
sapiens]
Length = 334
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 43 EDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS 102
E N + + FR Q+ LP+A + +IMK I+ +A + FI+ +T A
Sbjct: 29 EIRNLTVKDFRVQE--LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAW 85
Query: 103 ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLS 162
KR+T+ DI AM+ FD + + + + + K ++ + +VT
Sbjct: 86 IHTEDNKRRTLQRNDI--AMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPA---- 139
Query: 163 EELTEEAFTNQLPAGLITTDGQQQ 186
E + FT + GQQQ
Sbjct: 140 -EPVQYYFTLAQQPTAVQVQGQQQ 162
>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
sapiens]
Length = 335
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 43 EDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS 102
E N + + FR Q+ LP+A + +IMK I+ +A + FI+ +T A
Sbjct: 29 EIRNLTVKDFRVQE--LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAW 85
Query: 103 ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLS 162
KR+T+ DI AM+ FD + + + + + K ++ + +VT
Sbjct: 86 IHTEDNKRRTLQRNDI--AMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPA---- 139
Query: 163 EELTEEAFTNQLPAGLITTDGQQQ 186
E + FT + GQQQ
Sbjct: 140 -EPVQYYFTLAQQPTAVQVQGQQQ 162
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 31.2 bits (69), Expect = 0.65
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 67 IMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 126
+ A P+ G +D E C+ +S + S ++RCHQ K + + IL + L
Sbjct: 963 LFSQAFPENGD-NRDVIEDTLGCLLGRLSLLDSVVNQRCHQMKERL---QQILNFQNDLK 1018
Query: 127 --FDSYVEPLKLYLQKFREAMKG--EKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTD 182
F S + + LQK + + I A DGL E AG+I
Sbjct: 1019 VLFTSLADNKYIILQKLANVFEQPVAEQIEAIQQAEDGLKE----------FDAGIIELK 1068
Query: 183 GQQQNVMVYTTSYQQISGVQQI 204
+ + V S Q++S +Q +
Sbjct: 1069 RRGDKLQVEQPSMQELSKLQDM 1090
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 31.2 bits (69), Expect = 0.65
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 67 IMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 126
+ A P+ G +D E C+ +S + S ++RCHQ K + + IL + L
Sbjct: 6368 LFSQAFPENGD-NRDVIEDTLGCLLGRLSLLDSVVNQRCHQMKERL---QQILNFQNDLK 6423
Query: 127 --FDSYVEPLKLYLQKFREAMKG--EKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTD 182
F S + + LQK + + I A DGL E AG+I
Sbjct: 6424 VLFTSLADNKYIILQKLANVFEQPVAEQIEAIQQAEDGLKE----------FDAGIIELK 6473
Query: 183 GQQQNVMVYTTSYQQISGVQQI 204
+ + V S Q++S +Q +
Sbjct: 6474 RRGDKLQVEQPSMQELSKLQDM 6495
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 31.2 bits (69), Expect = 0.65
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 67 IMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 126
+ A P+ G +D E C+ +S + S ++RCHQ K + + IL + L
Sbjct: 6439 LFSQAFPENGD-NRDVIEDTLGCLLGRLSLLDSVVNQRCHQMKERL---QQILNFQNDLK 6494
Query: 127 --FDSYVEPLKLYLQKFREAMKG--EKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTD 182
F S + + LQK + + I A DGL E AG+I
Sbjct: 6495 VLFTSLADNKYIILQKLANVFEQPVAEQIEAIQQAEDGLKE----------FDAGIIELK 6544
Query: 183 GQQQNVMVYTTSYQQISGVQQI 204
+ + V S Q++S +Q +
Sbjct: 6545 RRGDKLQVEQPSMQELSKLQDM 6566
>gi|58530842 desmoplakin isoform II [Homo sapiens]
Length = 2272
Score = 30.0 bits (66), Expect = 1.4
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 85 CVQECVSEFISFITSEASERCHQEKRKTINGEDILFA-----MSTLGFDSYVEPLKLYLQ 139
C QEC E I+ S+ S R RKT + DI A + FD Y L L
Sbjct: 1898 CEQECEWEEITITGSDGSTRVVLVDRKTGSQYDIQDAIDKGLVDRKFFDQY-RSGSLSLT 1956
Query: 140 KFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSY 195
+F + + + G+G + + G+S+++ + I+T +N+ + ++S+
Sbjct: 1957 QFADMISLKNGVGTSSSMGSGVSDDVFSS--SRHESVSKISTISSVRNLTIRSSSF 2010
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 30.0 bits (66), Expect = 1.4
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 85 CVQECVSEFISFITSEASERCHQEKRKTINGEDILFA-----MSTLGFDSYVEPLKLYLQ 139
C QEC E I+ S+ S R RKT + DI A + FD Y L L
Sbjct: 2497 CEQECEWEEITITGSDGSTRVVLVDRKTGSQYDIQDAIDKGLVDRKFFDQY-RSGSLSLT 2555
Query: 140 KFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSY 195
+F + + + G+G + + G+S+++ + I+T +N+ + ++S+
Sbjct: 2556 QFADMISLKNGVGTSSSMGSGVSDDVFSS--SRHESVSKISTISSVRNLTIRSSSF 2609
>gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens]
Length = 1498
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 34 DTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIA-KDAKECVQECVSE 92
+ ++ + + ED N F +D+ + ++KN + K + K+ +CVQ C+
Sbjct: 189 EMDEIIEEQEDEN---ICFSARDLSQIRNAIFHLLKNFLRLLPKFSLKEKPQCVQNCIEV 245
Query: 93 FISFITSE-ASERCHQEKRKTIN 114
F+S E CH + + +N
Sbjct: 246 FVSLTNFEPVLHECHVTQARALN 268
>gi|51479143 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 MSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAF 170
++ + F+ ++P+ KL++ K RE + GG V A+ +EL E F
Sbjct: 27 VTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELF 76
>gi|51479141 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform b precursor [Homo sapiens]
Length = 116
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 MSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAF 170
++ + F+ ++P+ KL++ K RE + GG V A+ +EL E F
Sbjct: 35 VTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELF 84
>gi|51479139 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 MSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAF 170
++ + F+ ++P+ KL++ K RE + GG V A+ +EL E F
Sbjct: 27 VTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELF 76
>gi|51479137 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 MSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAF 170
++ + F+ ++P+ KL++ K RE + GG V A+ +EL E F
Sbjct: 27 VTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELF 76
>gi|18644883 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 MSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAF 170
++ + F+ ++P+ KL++ K RE + GG V A+ +EL E F
Sbjct: 27 VTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELF 76
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 29.3 bits (64), Expect = 2.5
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 27 YVIQPHDDTEDSMNDHEDTNGSKESFR---EQDIYLPIANVARIMKNA--IPQTGKIAKD 81
Y + P D+E+S +D+E+ + +ES R E+ I L + K+A I +T K D
Sbjct: 627 YEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVD 686
Query: 82 AKECVQECVSEFISFIT--SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 139
+ +Q S+ T SER ++ ING + + L + + LY
Sbjct: 687 DEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEW-----MVSLYNN 741
Query: 140 KFREAMKGEKGIGGAV 155
+ E G+G +
Sbjct: 742 NLNGILADEMGLGKTI 757
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 29.3 bits (64), Expect = 2.5
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 27 YVIQPHDDTEDSMNDHEDTNGSKESFR---EQDIYLPIANVARIMKNA--IPQTGKIAKD 81
Y + P D+E+S +D+E+ + +ES R E+ I L + K+A I +T K D
Sbjct: 627 YEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVD 686
Query: 82 AKECVQECVSEFISFIT--SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 139
+ +Q S+ T SER ++ ING + + L + + LY
Sbjct: 687 DEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEW-----MVSLYNN 741
Query: 140 KFREAMKGEKGIGGAV 155
+ E G+G +
Sbjct: 742 NLNGILADEMGLGKTI 757
>gi|186972143 tripeptidyl peptidase II [Homo sapiens]
Length = 1249
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 SSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVAR 66
S T ++LG AD I +Y+I P T++ D E K+S +E+D+ R
Sbjct: 972 SLTLSKTELGKKADVIPVHYYLIPPPTKTKNGSKDKE-----KDSEKEKDLKEEFTEALR 1026
Query: 67 IMK 69
+K
Sbjct: 1027 DLK 1029
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 34 DTEDSMNDHEDTNGSKESFREQ--------DIYLPIANVARIMKNAIPQTGKIAKDAKEC 85
DT+D D E++ G++E +Q + N A +++ IP G+ KD ++C
Sbjct: 1055 DTDDQEEDEENSLGTEEESSKQTPEDSCSEGSTADMTNTAELLEQ-IPDLGQDVKDPEDC 1113
Query: 86 VQE-CV 90
E CV
Sbjct: 1114 FTEGCV 1119
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 43 EDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS 102
E+ S ES + + + +P R KN T + D++ CVQ+ E IS + +
Sbjct: 1692 EEKLKSVESSQSETLIVP-----RSAKNVAAYTEQEEADSQGCVQKTYEEKISVLQRNLT 1746
Query: 103 E------RCHQEKRKTIN 114
E R QEK +T++
Sbjct: 1747 EKEKLLQRVGQEKEETVS 1764
>gi|104485446 TBP-associated factor 8 [Homo sapiens]
Length = 310
Score = 27.3 bits (59), Expect = 9.4
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 46 NGSKESFREQDIYLPIANVAR------IMKNAIPQTG--KIAKDAKECVQECVSEFISFI 97
+GSK+S D Y ++AR ++ + + + G K + E + E + +IS I
Sbjct: 17 SGSKQSTNPADNY----HLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEI 72
Query: 98 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTA 157
A C R DI+ + +GF+ V+ L Y ++ + + +TA
Sbjct: 73 GRSAKSYCEHTARTQPTLSDIVVTLVEMGFN--VDTLPAYAKRSQRMV---------ITA 121
Query: 158 TDGLSEELTEEAFT 171
++ +T +A T
Sbjct: 122 PPVTNQPVTPKALT 135
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 27.3 bits (59), Expect = 9.4
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 81 DAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK 140
++KE ++C +++ + E + Q K+ + +++L+A+ TL S E + L+
Sbjct: 1314 ESKELERDCRGQYLDYEKEEVEAQPRQWKKYDFHYDNVLWALLTLFTVSTGEGWPMVLKH 1373
Query: 141 FREAMKGEKG 150
+A E+G
Sbjct: 1374 SVDATYEEQG 1383
>gi|7657196 zinc finger protein 330 [Homo sapiens]
Length = 320
Score = 27.3 bits (59), Expect = 9.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 4 DGD-SSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIA 62
+GD +S DA +S+D G + Y + D+ E ++ E+ G K+S E
Sbjct: 243 EGDGASGYDAYWKNLSSDKYGDTSYHDEEEDEYEAEDDEEEEDEGRKDSDTESSDLFTNL 302
Query: 63 NVAR 66
N+ R
Sbjct: 303 NLGR 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,030,117
Number of Sequences: 37866
Number of extensions: 289985
Number of successful extensions: 675
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 29
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.