Guide to the Human Genome
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Name: KCNIP3 Sequence: fasta or formatted (256aa) NCBI GI: 7305199
Description:

Kv channel interacting protein 3 isoform 1

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [230aa] Kv channel interacting protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         16           1
 C cysteine            1.6          4           2
 D aspartate           7.0         18           1
 E glutamate           8.2         21           2
 F phenylalanine       5.9         15           2
 G glycine             6.2         16           1
 H histidine           2.7          7           1
 I isoleucine          5.1         13           1
 K lysine              7.0         18           2
 L leucine            10.2         26           2
 M methionine          3.5          9           2
 N asparagine          3.1          8           1
 P proline             3.5          9           1
 Q glutamine           5.5         14           1
 R arginine            4.3         11           1
 S serine              6.2         16           2
 T threonine           5.5         14           2
 V valine              4.3         11           2
 W tryptophan          1.2          3           1
 Y tyrosine            2.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Kv channel interacting protein 3 isoform 1 
KCNIP3                0.756   Kv channel interacting protein 3 isoform 2 
KCNIP4                0.611   Kv channel interacting protein 4 isoform 1 
KCNIP4                0.611   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.611   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.609   Kv channel interacting protein 4 isoform 4 
KCNIP2                0.591   Kv channel interacting protein 2 isoform 3 
KCNIP4                0.591   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.591   Kv channel interacting protein 4 isoform 3 
KCNIP2                0.589   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.589   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.589   Kv channel interacting protein 2 isoform 2 
KCNIP2                0.587   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.575   Kv channel interacting protein 2 isoform 4 
KCNIP1                0.569   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.567   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.567   Kv channel interacting protein 1 isoform 2 
KCNIP2                0.385   Kv channel interacting protein 2 isoform 7 
FREQ                  0.304   frequenin homolog isoform 1 
FREQ                  0.282   frequenin homolog isoform 2 
HPCAL1                0.278   hippocalcin-like 1 
HPCAL1                0.278   hippocalcin-like 1 
HPCA                  0.278   hippocalcin 
NCALD                 0.272   neurocalcin delta 
NCALD                 0.272   neurocalcin delta 
NCALD                 0.272   neurocalcin delta 
NCALD                 0.272   neurocalcin delta 
NCALD                 0.272   neurocalcin delta 
NCALD                 0.272   neurocalcin delta 
NCALD                 0.272   neurocalcin delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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