Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NCALD Sequence: fasta or formatted (193aa) NCBI GI: 98985789
Description:

neurocalcin delta

Referenced in:

Neurons

Other entries for this name:
alt mRNA [193aa] neurocalcin delta
alt mRNA [193aa] neurocalcin delta
alt mRNA [193aa] neurocalcin delta
alt mRNA [193aa] neurocalcin delta
alt mRNA [193aa] neurocalcin delta
alt mRNA [193aa] neurocalcin delta
alt mRNA [193aa] neurocalcin delta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          9           1
 C cysteine            1.0          2           1
 D aspartate           7.3         14           1
 E glutamate           9.3         18           2
 F phenylalanine       7.3         14           2
 G glycine             6.7         13           1
 H histidine           1.6          3           1
 I isoleucine          5.7         11           2
 K lysine              8.3         16           2
 L leucine             7.3         14           2
 M methionine          4.7          9           1
 N asparagine          2.6          5           1
 P proline             3.6          7           1
 Q glutamine           4.1          8           1
 R arginine            5.2         10           1
 S serine              8.8         17           2
 T threonine           4.1          8           1
 V valine              3.6          7           1
 W tryptophan          1.0          2           1
 Y tyrosine            3.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
NCALD                 1.000   neurocalcin delta 
HPCAL1                0.932   hippocalcin-like 1 
HPCAL1                0.932   hippocalcin-like 1 
HPCA                  0.888   hippocalcin 
VSNL1                 0.695   visinin-like 1 
HPCAL4                0.662   hippocalcin-like protein 4 
FREQ                  0.591   frequenin homolog isoform 1 
FREQ                  0.518   frequenin homolog isoform 2 
RCVRN                 0.482   recoverin 
KCNIP1                0.387   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.387   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.387   Kv channel interacting protein 1 isoform 2 
KCNIP2                0.387   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.387   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.387   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.387   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.387   Kv channel interacting protein 2 isoform 2 
KCNIP2                0.371   Kv channel interacting protein 2 isoform 4 
KCNIP4                0.368   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.368   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.368   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.368   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.368   Kv channel interacting protein 4 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press