Search of human proteins with 5453583

Search of human proteins with 5453583

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453583 nuclear DNA-binding protein [Homo sapiens]
         (141 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27894373 nuclear DNA-binding protein [Homo sapiens]                280   4e-76
gi|5453583 nuclear DNA-binding protein [Homo sapiens]                 280   4e-76
gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens]          264   2e-71
gi|169198899 PREDICTED: similar to hCG1791993 [Homo sapiens]          264   2e-71
gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo sap...   263   5e-71
gi|113422056 PREDICTED: similar to nuclear DNA-binding protein [...   252   6e-68
gi|113421639 PREDICTED: similar to nuclear DNA-binding protein [...   252   6e-68
gi|124249396 coiled-coil domain containing 30 [Homo sapiens]           34   0.046
gi|155722985 SMC5 protein [Homo sapiens]                               30   0.86 
gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens]                  28   1.9  
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]                28   3.3  
gi|57165361 ring finger protein 165 [Homo sapiens]                     27   4.3  
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re...    27   4.3  
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13...    27   5.6  
gi|19923202 enhancer of zeste homolog 1 [Homo sapiens]                 27   5.6  
gi|55770844 catenin, alpha 1 [Homo sapiens]                            27   5.6  
gi|55770846 catenin, alpha 2 [Homo sapiens]                            26   9.5  
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho...    26   9.5  
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom...    26   9.5  
gi|214010216 SMC6 protein [Homo sapiens]                               26   9.5  
gi|13375848 SMC6 protein [Homo sapiens]                                26   9.5  

>gi|27894373 nuclear DNA-binding protein [Homo sapiens]
          Length = 141

 Score =  280 bits (715), Expect = 4e-76
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
           MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60

Query: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
Sbjct: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120

Query: 121 ALWEPKSKNASKVANKGKSKS 141
           ALWEPKSKNASKVANKGKSKS
Sbjct: 121 ALWEPKSKNASKVANKGKSKS 141


>gi|5453583 nuclear DNA-binding protein [Homo sapiens]
          Length = 141

 Score =  280 bits (715), Expect = 4e-76
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
           MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60

Query: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
Sbjct: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120

Query: 121 ALWEPKSKNASKVANKGKSKS 141
           ALWEPKSKNASKVANKGKSKS
Sbjct: 121 ALWEPKSKNASKVANKGKSKS 141


>gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens]
          Length = 141

 Score =  264 bits (675), Expect = 2e-71
 Identities = 133/141 (94%), Positives = 136/141 (96%)

Query: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
           MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60

Query: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120

Query: 121 ALWEPKSKNASKVANKGKSKS 141
           ALWEPK KNASKVA+KGKSKS
Sbjct: 121 ALWEPKPKNASKVAHKGKSKS 141


>gi|169198899 PREDICTED: similar to hCG1791993 [Homo sapiens]
          Length = 142

 Score =  264 bits (675), Expect = 2e-71
 Identities = 133/141 (94%), Positives = 136/141 (96%)

Query: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
           MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 2   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61

Query: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 62  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121

Query: 121 ALWEPKSKNASKVANKGKSKS 141
           ALWEPK KNASKVA+KGKSKS
Sbjct: 122 ALWEPKPKNASKVAHKGKSKS 142


>gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo
           sapiens]
          Length = 142

 Score =  263 bits (671), Expect = 5e-71
 Identities = 132/141 (93%), Positives = 135/141 (95%)

Query: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
           MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 2   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61

Query: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 62  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121

Query: 121 ALWEPKSKNASKVANKGKSKS 141
           ALWEPK KN SKVA+KGKSKS
Sbjct: 122 ALWEPKPKNTSKVAHKGKSKS 142


>gi|113422056 PREDICTED: similar to nuclear DNA-binding protein
           [Homo sapiens]
          Length = 157

 Score =  252 bits (644), Expect = 6e-68
 Identities = 128/140 (91%), Positives = 130/140 (92%)

Query: 2   AGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAY 61
           A EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSAY
Sbjct: 18  AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 77

Query: 62  TLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNA 121
            LNSMFW YLATQGVNPKEH VKQELERIRVYMNRVKEI DKKKAGKLDRGAASRFV+NA
Sbjct: 78  ILNSMFWAYLATQGVNPKEHSVKQELERIRVYMNRVKEIADKKKAGKLDRGAASRFVRNA 137

Query: 122 LWEPKSKNASKVANKGKSKS 141
           LWEPK KNASKVA KGKSKS
Sbjct: 138 LWEPKPKNASKVAYKGKSKS 157


>gi|113421639 PREDICTED: similar to nuclear DNA-binding protein
           [Homo sapiens]
          Length = 157

 Score =  252 bits (644), Expect = 6e-68
 Identities = 128/140 (91%), Positives = 130/140 (92%)

Query: 2   AGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAY 61
           A EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSAY
Sbjct: 18  AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 77

Query: 62  TLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNA 121
            LNSMFW YLATQGVNPKEH VKQELERIRVYMNRVKEI DKKKAGKLDRGAASRFV+NA
Sbjct: 78  ILNSMFWAYLATQGVNPKEHSVKQELERIRVYMNRVKEIADKKKAGKLDRGAASRFVRNA 137

Query: 122 LWEPKSKNASKVANKGKSKS 141
           LWEPK KNASKVA KGKSKS
Sbjct: 138 LWEPKPKNASKVAYKGKSKS 157


>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
          Length = 783

 Score = 33.9 bits (76), Expect = 0.046
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 18  LSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVN 77
           L   EN     DE +K     S  EL +KL  L+Q K  L   Y L  +  + +  +  N
Sbjct: 449 LKQLENEKRKYDEHVK-----SNQELSEKLSKLQQEKEALREEY-LRLLKLLNVHVRNYN 502

Query: 78  PKEHPVKQELERIRVYMNRVKEITDKK 104
            K H  K +L++++  +    E+ DK+
Sbjct: 503 EKHHQQKVKLQKVKYRLTNEVELRDKR 529


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 11  PVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70
           P E+H+Y    +N +   ++ L+T        L + +   E+ K D+   Y       + 
Sbjct: 205 PPEMHKYHCELKN-LREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLI 263

Query: 71  LATQGVNP--KEHPVKQELERIRVYMNRVKEITDKKKAGKL 109
              +   P  +   V+QE E +++  +RVKE   K K G++
Sbjct: 264 EMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQI 304


>gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens]
          Length = 363

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 69  VYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVK 119
           V+LA QG +  EH +KQ L  +       + + D ++ G  +R  +SR  K
Sbjct: 198 VHLALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSRLKK 248


>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
          Length = 600

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 75  GVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKNASKVA 134
           G  PKE  + + +++      RV+   DKK+AGK  RG           E K  + +   
Sbjct: 146 GEKPKEEKIIRGIDK-----GRVRAAVDKKEAGKDGRGEERAVATKKEEEKKGSDRNTGL 200

Query: 135 NKGKSK 140
           ++ K K
Sbjct: 201 SRDKDK 206


>gi|57165361 ring finger protein 165 [Homo sapiens]
          Length = 346

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 70  YLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKN 129
           +LA QG+NP  H        +R     + ++ D  + G + RGA    ++   +  K K 
Sbjct: 220 FLALQGLNPSRH-----TSAVRESYEELLQLED--RLGNVTRGAVQNTIERFTFPHKYKK 272

Query: 130 ASKVANKGK 138
                 KGK
Sbjct: 273 RRPQDGKGK 281


>gi|38569493 potassium voltage-gated channel, subfamily H
           (eag-related), member 3 [Homo sapiens]
          Length = 1083

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 40  RNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKE 99
           R ++ + LD  ++ K +L+        FW  L          P+K E   + +++   K+
Sbjct: 80  RQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVI-------PIKNEKGEVALFLVSHKD 132

Query: 100 ITDKKKAGKLDRGAASRFVKNALWEPKSKNASKVANKGKSKS 141
           I++ K  G  DR   +   +      +SK  +  AN+ +S++
Sbjct: 133 ISETKNRGGPDRWKETGGGRRRYGRARSKGFN--ANRRRSRA 172


>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
            [Homo sapiens]
          Length = 5058

 Score = 26.9 bits (58), Expect = 5.6
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 6    INEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLD 48
            I+ED+ + + +Y+S F NS  +V+++L     +S N+ +  ++
Sbjct: 1071 IDEDFRISLFQYMSQFFNS--SVEDLLDNKCLISDNKHISSVN 1111


>gi|19923202 enhancer of zeste homolog 1 [Homo sapiens]
          Length = 747

 Score = 26.9 bits (58), Expect = 5.6
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 3   GEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQ 52
           G+E+ E+    I E ++ ++  +   +EM+   + +S    L+ +D L Q
Sbjct: 136 GDEVKEEDETFIEELINNYDGKVHGEEEMIPGSVLISDAVFLELVDALNQ 185


>gi|55770844 catenin, alpha 1 [Homo sapiens]
          Length = 906

 Score = 26.9 bits (58), Expect = 5.6
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 13  EIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLA 72
           E+ EY   F      + E+     S+S NE   KL  +  ++++ +    +N+   +   
Sbjct: 415 EVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAK 474

Query: 73  TQGVNPKEHP--VKQELER-IRVYMNRVKEIT 101
            Q    +E+    K++ E+ +RV  + V +IT
Sbjct: 475 PQSKLAQENMDLFKEQWEKQVRVLTDAVDDIT 506


>gi|55770846 catenin, alpha 2 [Homo sapiens]
          Length = 905

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 13  EIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLA 72
           E+ EY   F      + E+     S+S NE   KL  +   ++D +    +N+   +   
Sbjct: 413 EVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAAR 472

Query: 73  TQGVNPKEH--PVKQELER-IRVYMNRVKEIT 101
            Q    +++    K + E+ +RV    V +IT
Sbjct: 473 PQSKVAQDNMDVFKDQWEKQVRVLTEAVDDIT 504


>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
            sapiens]
          Length = 1687

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 31/93 (33%)

Query: 14   IHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLAT 73
            +HEY  A  N + AVDE+          E L+  DP E                      
Sbjct: 1342 LHEYWMALRNRVSAVDEL------AMATERLRVRDPREPKP------------------- 1376

Query: 74   QGVNPKEHPVKQELERIRVYMNRVKEITDKKKA 106
               NP   PV   +E   V  NR+K + DK  A
Sbjct: 1377 ---NP---PVLHIIEPHEVEQNRIKLLNDKAVA 1403


>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
            sapiens]
          Length = 1659

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 31/93 (33%)

Query: 14   IHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLAT 73
            +HEY  A  N + AVDE+          E L+  DP E                      
Sbjct: 1342 LHEYWMALRNRVSAVDEL------AMATERLRVRDPREPKP------------------- 1376

Query: 74   QGVNPKEHPVKQELERIRVYMNRVKEITDKKKA 106
               NP   PV   +E   V  NR+K + DK  A
Sbjct: 1377 ---NP---PVLHIIEPHEVEQNRIKLLNDKAVA 1403


>gi|214010216 SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 29  DEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELE 88
           DE L   +   +    Q L+P    +   +S        W+    +    +E+ V QE+E
Sbjct: 381 DEQLCKRIEELKKSTDQSLEPERLERQKKIS--------WLKERVKAFQNQENSVNQEIE 432

Query: 89  RIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKNASKVANKG 137
           + +  + + KE   K K  +LD   A  + +  L E K     ++   G
Sbjct: 433 QFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFG 481


>gi|13375848 SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 29  DEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELE 88
           DE L   +   +    Q L+P    +   +S        W+    +    +E+ V QE+E
Sbjct: 381 DEQLCKRIEELKKSTDQSLEPERLERQKKIS--------WLKERVKAFQNQENSVNQEIE 432

Query: 89  RIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKNASKVANKG 137
           + +  + + KE   K K  +LD   A  + +  L E K     ++   G
Sbjct: 433 QFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFG 481


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,447,221
Number of Sequences: 37866
Number of extensions: 153628
Number of successful extensions: 378
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 21
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.