Guide to the Human Genome
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Name: AGR2 Sequence: fasta or formatted (175aa) NCBI GI: 5453541
Description:

anterior gradient 2 homolog

Referenced in:

Mammary Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         13           1
 C cysteine            0.6          1           1
 D aspartate           6.3         11           1
 E glutamate           5.7         10           2
 F phenylalanine       2.3          4           1
 G glycine             2.9          5           1
 H histidine           2.3          4           2
 I isoleucine          4.0          7           2
 K lysine             10.3         18           2
 L leucine            14.9         26           3
 M methionine          2.3          4           1
 N asparagine          2.9          5           1
 P proline             5.7         10           1
 Q glutamine           4.0          7           1
 R arginine            4.0          7           1
 S serine              5.7         10           1
 T threonine           8.0         14           2
 V valine              5.1          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            4.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   anterior gradient 2 homolog 
AGR3                  0.582   breast cancer membrane protein 11 
TXNDC12               0.191   thioredoxin domain containing 12 
MYO5A                 0.022   myosin VA isoform 2 
MYO5A                 0.022   myosin VA isoform 1 
CEP290                0.012   centrosomal protein 290kDa 
MYO5B                 0.009   myosin VB 
RBM15                 0.009   RNA binding motif protein 15 
NOTCH3                0.009   Notch homolog 3 
C4orf8                0.009   hypothetical protein LOC8603 
SPATA20               0.009   spermatogenesis associated 20 
KIAA1618              0.009   hypothetical protein LOC57714 
EFCAB5                0.006   EF-hand calcium binding domain 5 isoform b 
EFCAB5                0.006   EF-hand calcium binding domain 5 isoform a 
SP140L                0.006   SP140 nuclear body protein-like 
AHCTF1                0.006   transcription factor ELYS 
C1orf62               0.006   hypothetical protein LOC254268 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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