Guide to the Human Genome
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Name: AGR3 Sequence: fasta or formatted (166aa) NCBI GI: 28827801
Description:

breast cancer membrane protein 11

Referenced in:

Mammary Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         10           1
 C cysteine            1.2          2           1
 D aspartate           4.8          8           2
 E glutamate           6.6         11           2
 F phenylalanine       2.4          4           1
 G glycine             3.6          6           1
 H histidine           2.4          4           2
 I isoleucine          6.0         10           1
 K lysine              7.2         12           2
 L leucine            13.9         23           3
 M methionine          4.8          8           2
 N asparagine          4.2          7           1
 P proline             4.8          8           2
 Q glutamine           6.0         10           1
 R arginine            4.8          8           1
 S serine              6.0         10           2
 T threonine           4.8          8           2
 V valine              4.8          8           1
 W tryptophan          1.2          2           1
 Y tyrosine            4.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   breast cancer membrane protein 11 
AGR2                  0.612   anterior gradient 2 homolog 
TXNDC12               0.207   thioredoxin domain containing 12 
SPATA20               0.016   spermatogenesis associated 20 
MYO5A                 0.010   myosin VA isoform 2 
MYO5A                 0.010   myosin VA isoform 1 
SYNE1                 0.010   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.010   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.010   spectrin repeat containing, nuclear envelope 1 isof...
MSH3                  0.006   mutS homolog 3 
SERPINC1              0.006   serpin peptidase inhibitor, clade C, member 1 
SMYD1                 0.006   SET and MYND domain containing 1 
DOPEY2                0.006   pad-1-like 
MIA3                  0.006   melanoma inhibitory activity family, member 3 [Homo...
SMPDL3A               0.006   acid sphingomyelinase-like phosphodiesterase 3A [Hom...
LHX5                  0.006   LIM homeobox protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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