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Search of human proteins with 51972214
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51972214 lin-28 homolog B [Homo sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51972214 lin-28 homolog B [Homo sapiens] 525 e-149
gi|13375938 lin-28 homolog [Homo sapiens] 268 3e-72
gi|34098946 nuclease sensitive element binding protein 1 [Homo s... 69 4e-12
gi|156415990 Y box binding protein 2 [Homo sapiens] 69 4e-12
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 65 7e-11
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 65 7e-11
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 42 7e-04
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens] 39 0.004
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens] 39 0.004
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens] 37 0.012
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens] 37 0.012
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens] 37 0.016
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens] 37 0.016
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 37 0.016
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 37 0.016
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 37 0.016
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 37 0.021
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 36 0.028
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 35 0.047
gi|153070260 myristoylated alanine-rich protein kinase C substra... 33 0.23
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 33 0.23
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 33 0.30
gi|4505011 lysyl oxidase-like 2 precursor [Homo sapiens] 33 0.30
gi|117414152 transcription factor 19 [Homo sapiens] 33 0.30
gi|117414156 transcription factor 19 [Homo sapiens] 33 0.30
gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens] 33 0.30
gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens] 33 0.30
gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens] 33 0.30
gi|239752278 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo ... 32 0.40
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 525 bits (1351), Expect = e-149
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MAEGGASKGGGEEPGKLPEPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPV 60
MAEGGASKGGGEEPGKLPEPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPV
Sbjct: 1 MAEGGASKGGGEEPGKLPEPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPV 60
Query: 61 DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQ 120
DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQ
Sbjct: 61 DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQ 120
Query: 121 KRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQ 180
KRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQ
Sbjct: 121 KRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQ 180
Query: 181 EAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQSKK 240
EAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQSKK
Sbjct: 181 EAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQSKK 240
Query: 241 GPSVQKRKKT 250
GPSVQKRKKT
Sbjct: 241 GPSVQKRKKT 250
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 268 bits (685), Expect = 3e-72
Identities = 135/197 (68%), Positives = 150/197 (76%), Gaps = 10/197 (5%)
Query: 4 GGASKGGGEEPGKLPEPAE---EESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPV 60
GG +K E P + PE A +E Q+L G G CKWFNVRMGFGF+SM R G LD PV
Sbjct: 11 GGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPV 70
Query: 61 DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQ 120
DVFVHQSKL MEGFRSLKEGE VEFTFKKS+KGLESIRVTGPGG C+GSERRPKGK++Q
Sbjct: 71 DVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQ 130
Query: 121 KRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQG-- 178
KR+ KGDRCYNCGGLDHHAKEC LPPQPKKCH+CQSI HMVA+CP K AQ S+QG
Sbjct: 131 KRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK--AQQGPSAQGKP 188
Query: 179 ---RQEAESQPCTSTLP 192
R+E E + LP
Sbjct: 189 TYFREEEEEIHSPTLLP 205
>gi|34098946 nuclease sensitive element binding protein 1 [Homo
sapiens]
Length = 324
Score = 68.9 bits (167), Expect = 4e-12
Identities = 49/115 (42%), Positives = 61/115 (53%), Gaps = 18/115 (15%)
Query: 5 GASKGGGEEPGKLPE--PAEEESQVL--RGTGHCKWFNVRMGFGFISMINREGSPLDIPV 60
GA GG PG L PA + +V+ + G KWFNVR G+GFI NR D
Sbjct: 33 GAGSGG---PGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFI---NRN----DTKE 82
Query: 61 DVFVHQSKLFMEG----FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSE 111
DVFVHQ+ + RS+ +GE VEF + KG E+ VTGPGG P GS+
Sbjct: 83 DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 137
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 68.9 bits (167), Expect = 4e-12
Identities = 50/140 (35%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 2 AEGGASKGGGEEPGK-------LPEP-----AEEESQVLRGTGHCKWFNVRMGFGFISMI 49
A G S G PG P P A++ ++ G KWFNVR G+GFI
Sbjct: 54 AAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFI--- 110
Query: 50 NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGS 105
NR D DVFVHQ+ + RS+ +GE VEF + KG E+ VTGPGG
Sbjct: 111 NRN----DTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGV 166
Query: 106 PCLGSERRPKGKTLQKRKPK 125
P GS P + ++ P+
Sbjct: 167 PVKGSRYAPNRRKSRRFIPR 186
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 64.7 bits (156), Expect = 7e-11
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 19 EPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----F 74
E AE++ + G KWFNVR G+GFI NR D DVFVHQ+ +
Sbjct: 80 EDAEKKVLATKVLGTVKWFNVRNGYGFI---NRN----DTKEDVFVHQTAIKKNNPRKYL 132
Query: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
RS+ +GE VEF + KG E+ VTGP G P GS
Sbjct: 133 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 64.7 bits (156), Expect = 7e-11
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 19 EPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----F 74
E AE++ + G KWFNVR G+GFI NR D DVFVHQ+ +
Sbjct: 80 EDAEKKVLATKVLGTVKWFNVRNGYGFI---NRN----DTKEDVFVHQTAIKKNNPRKYL 132
Query: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
RS+ +GE VEF + KG E+ VTGP G P GS
Sbjct: 133 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 41.6 bits (96), Expect = 7e-04
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 123 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKN------VAQPPASS 176
+ K +CY+CG L H K+C+ KC+ C I H+ NC + Q P SS
Sbjct: 106 RQKEQKCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSS 161
Query: 177 QGRQE 181
QG +
Sbjct: 162 QGMSQ 166
Score = 38.1 bits (87), Expect = 0.007
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 126 GDRCYNCGGLDHHAKECSLPPQPKK--CHYCQSIMHMVANC 164
G+ CYNCG H AK+C P + ++ C+ C + H+ +C
Sbjct: 64 GNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC 104
>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
Length = 170
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKK--CHYCQSIMHMVANCPH 166
D CYNCG H AK+C P + ++ C+ C H+ +C H
Sbjct: 65 DACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 106
Score = 35.0 bits (79), Expect = 0.061
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 122 RKPKGDR---CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
++PK +R CYNCG H A++C + +KC+ C H+ +C
Sbjct: 81 KEPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 125
Score = 34.3 bits (77), Expect = 0.10
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHK---------NVAQPPASSQ 177
D CY CG H AK+C L Q C+ C H+ +C N +P ++
Sbjct: 45 DICYRCGESGHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 102
Query: 178 GRQEAESQPCTS 189
A+ Q C S
Sbjct: 103 DCDHADEQKCYS 114
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY+CG H K+C+ KC+ C H+ NC
Sbjct: 111 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 143
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY CG H A CS + C+ C H+ C
Sbjct: 129 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLAREC 164
>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
Length = 177
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKK--CHYCQSIMHMVANCPH 166
D CYNCG H AK+C P + ++ C+ C H+ +C H
Sbjct: 72 DACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 113
Score = 35.0 bits (79), Expect = 0.061
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 122 RKPKGDR---CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
++PK +R CYNCG H A++C + +KC+ C H+ +C
Sbjct: 88 KEPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 132
Score = 34.3 bits (77), Expect = 0.10
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHK---------NVAQPPASSQ 177
D CY CG H AK+C L Q C+ C H+ +C N +P ++
Sbjct: 52 DICYRCGESGHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109
Query: 178 GRQEAESQPCTS 189
A+ Q C S
Sbjct: 110 DCDHADEQKCYS 121
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY+CG H K+C+ KC+ C H+ NC
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 150
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY CG H A CS + C+ C H+ C
Sbjct: 136 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLAREC 171
>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
Length = 171
Score = 37.4 bits (85), Expect = 0.012
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKK--CHYCQSIMHMVANCPH 166
+ CYNCG H AK+C P + ++ C+ C H+ +C H
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 107
Score = 35.0 bits (79), Expect = 0.061
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 122 RKPKGDR---CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
++PK +R CYNCG H A++C + +KC+ C H+ +C
Sbjct: 82 KEPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 126
Score = 33.9 bits (76), Expect = 0.14
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHK---------NVAQPPASSQ 177
D CY CG H AK+C L + + C+ C H+ +C N +P ++
Sbjct: 45 DICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 103
Query: 178 GRQEAESQPCTS 189
A+ Q C S
Sbjct: 104 DCDHADEQKCYS 115
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY+CG H K+C+ KC+ C H+ NC
Sbjct: 112 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 144
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY CG H A CS + C+ C H+ C
Sbjct: 130 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLAREC 165
>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
Length = 178
Score = 37.4 bits (85), Expect = 0.012
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKK--CHYCQSIMHMVANCPH 166
+ CYNCG H AK+C P + ++ C+ C H+ +C H
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 114
Score = 35.0 bits (79), Expect = 0.061
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 122 RKPKGDR---CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
++PK +R CYNCG H A++C + +KC+ C H+ +C
Sbjct: 89 KEPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 133
Score = 33.9 bits (76), Expect = 0.14
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHK---------NVAQPPASSQ 177
D CY CG H AK+C L + + C+ C H+ +C N +P ++
Sbjct: 52 DICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 110
Query: 178 GRQEAESQPCTS 189
A+ Q C S
Sbjct: 111 DCDHADEQKCYS 122
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY+CG H K+C+ KC+ C H+ NC
Sbjct: 119 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 151
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY CG H A CS + C+ C H+ C
Sbjct: 137 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLAREC 172
>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
Length = 172
Score = 37.0 bits (84), Expect = 0.016
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHK---------NVAQPPASSQ 177
D CY CG H AK+C L + C+ C H+ +C N +P ++
Sbjct: 45 DICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 104
Query: 178 GRQEAESQPCTS 189
A+ Q C S
Sbjct: 105 DCDHADEQKCYS 116
Score = 35.0 bits (79), Expect = 0.061
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 122 RKPKGDR---CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
++PK +R CYNCG H A++C + +KC+ C H+ +C
Sbjct: 83 KEPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 127
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY+CG H K+C+ KC+ C H+ NC
Sbjct: 113 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 145
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY CG H A CS + C+ C H+ C
Sbjct: 131 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLAREC 166
>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
Length = 179
Score = 37.0 bits (84), Expect = 0.016
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 127 DRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHK---------NVAQPPASSQ 177
D CY CG H AK+C L + C+ C H+ +C N +P ++
Sbjct: 52 DICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 111
Query: 178 GRQEAESQPCTS 189
A+ Q C S
Sbjct: 112 DCDHADEQKCYS 123
Score = 35.0 bits (79), Expect = 0.061
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 122 RKPKGDR---CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
++PK +R CYNCG H A++C + +KC+ C H+ +C
Sbjct: 90 KEPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 134
Score = 33.1 bits (74), Expect = 0.23
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY+CG H K+C+ KC+ C H+ NC
Sbjct: 120 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 152
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 RCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
+CY CG H A CS + C+ C H+ C
Sbjct: 138 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLAREC 173
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 37.0 bits (84), Expect = 0.016
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 20/127 (15%)
Query: 122 RKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQE 181
R P+ RC+ CG H +EC ++ + + +V N + A QG Q
Sbjct: 1353 RDPRDLRCFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRNLVNAQQVAGSAQQQGDQS 1412
Query: 182 ---AESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQS 238
+S C+ + + PFPQ S Q A+ T+ S P Q
Sbjct: 1413 IRTRQSSECSES------PSYSPQPQPFPQ-----------NSSQSAAITQPSSQPGSQP 1455
Query: 239 KKGPSVQ 245
K GP Q
Sbjct: 1456 KLGPPQQ 1462
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 37.0 bits (84), Expect = 0.016
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 20/127 (15%)
Query: 122 RKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQE 181
R P+ RC+ CG H +EC ++ + + +V N + A QG Q
Sbjct: 1352 RDPRDLRCFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRNLVNAQQVAGSAQQQGDQS 1411
Query: 182 ---AESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQS 238
+S C+ + + PFPQ S Q A+ T+ S P Q
Sbjct: 1412 IRTRQSSECSES------PSYSPQPQPFPQ-----------NSSQSAAITQPSSQPGSQP 1454
Query: 239 KKGPSVQ 245
K GP Q
Sbjct: 1455 KLGPPQQ 1461
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 37.0 bits (84), Expect = 0.016
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 20/127 (15%)
Query: 122 RKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQE 181
R P+ RC+ CG H +EC ++ + + +V N + A QG Q
Sbjct: 1348 RDPRDLRCFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRNLVNAQQVAGSAQQQGDQS 1407
Query: 182 ---AESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQS 238
+S C+ + + PFPQ S Q A+ T+ S P Q
Sbjct: 1408 IRTRQSSECSES------PSYSPQPQPFPQ-----------NSSQSAAITQPSSQPGSQP 1450
Query: 239 KKGPSVQ 245
K GP Q
Sbjct: 1451 KLGPPQQ 1457
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 36.6 bits (83), Expect = 0.021
Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 23/159 (14%)
Query: 98 RVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSL------PPQPKKC 151
R GGSP RRP+ +QK++ K N A+E SL P P+
Sbjct: 392 RKPNAGGSPA-PVRRRPEASPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPR-- 448
Query: 152 HYCQSIMHMVANCPHKNVAQPPASSQGRQEAESQPCTSTLPREVGGGHGCTSPPFPQEAR 211
+ + K+ A+P + S S PC S G G T PP P R
Sbjct: 449 --ARLSASTASELSPKSKARPSSPSTSWHRPAS-PCPSP-------GPGHTLPPKPPSPR 498
Query: 212 AEISERSG--RSPQEASSTKSSIAPEE--QSKKGPSVQK 246
+ G R +EA + S+ PE+ QSK+ S +K
Sbjct: 499 GTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEK 537
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 36.2 bits (82), Expect = 0.028
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 165
C NC H +K C LP + ++C C H++ +CP
Sbjct: 243 CRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCP 279
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 35.4 bits (80), Expect = 0.047
Identities = 33/132 (25%), Positives = 43/132 (32%), Gaps = 13/132 (9%)
Query: 111 ERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC------ 164
E PKG + R+ K + D ++ +LP Q K C+ C
Sbjct: 110 EEAPKGSRVWTREEKAPQGEEMWARDKRDRQGALPAQRGKSPACRETGVGAEGCRVLTAE 169
Query: 165 --PHKNVAQPPASSQGRQEAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSP 222
P + PP S RQ P +PR T+ R E E R
Sbjct: 170 AHPVMALPAPPPSPAARQ-----PEPPPMPRAARSARAATAARAAAAEREEAREERARGC 224
Query: 223 QEASSTKSSIAP 234
EAS T S P
Sbjct: 225 SEASRTSSDSGP 236
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 170 AQPPASSQGRQEAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTK 229
A+ PA+ G+ EA + G +P +EA A +G PQEA +
Sbjct: 184 AEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPG--EEAAAGEEGAAGGDPQEAKPQE 241
Query: 230 SSIAPEE 236
+++APE+
Sbjct: 242 AAVAPEK 248
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 33.1 bits (74), Expect = 0.23
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 109 GSERRPKGKTLQKRKP--KGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPH 166
G RR + R+P DRCY CG H+A +C + ++ +S +
Sbjct: 84 GMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRR---SRSRSRSHSRSRG 140
Query: 167 KNVAQPPASSQGRQEAESQPCTS---TLPR------------EVGGGHGCTSPPFPQEAR 211
+ ++ + S+GR+ + P S +L R + G SP +
Sbjct: 141 RRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRS 200
Query: 212 AEISE-RSGRSPQEASSTKSSIAPEEQSKKGPSVQK 246
IS RS RS + S K S +P ++ S ++
Sbjct: 201 RSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 32.7 bits (73), Expect = 0.30
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 143 SLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQEAESQPCTSTLPREVGGGHGCT 202
S PP+P H +++ A + QPPA++ ++A + P ST+P +
Sbjct: 114 SAPPEP---HREETV---TATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDRPVS 167
Query: 203 SPPF------PQEARAEISERSGRSPQEASSTKSSIAPEEQSK 239
P P AR+ S + PQE S + E ++K
Sbjct: 168 QPSLVGSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETK 210
>gi|4505011 lysyl oxidase-like 2 precursor [Homo sapiens]
Length = 774
Score = 32.7 bits (73), Expect = 0.30
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 71 MEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCY 130
MEG+ +KEG+ + K S V G G P ER K + + + Y
Sbjct: 202 MEGYVEVKEGKTWKQICDKHWTAKNSRVVCGMFGFP---GERTYNTKVYKMFASRRKQRY 258
Query: 131 -----NCGGLDHHAKECSLPPQ----PKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQ 180
+C G + H C L PQ P K C++ + V +C V P S+ R+
Sbjct: 259 WPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLPAVVSCVPGQVFSPDGPSRFRK 317
>gi|117414152 transcription factor 19 [Homo sapiens]
Length = 345
Score = 32.7 bits (73), Expect = 0.30
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 40 RMGFGFISMINREGSPLDIPVDVFVHQSK--LFMEGFRSLKEGEPVEFTFKKSSKGLESI 97
R+G GF M+ +G+P P+ F K L + SL + P TF S G +S+
Sbjct: 144 RVGAGFRPMLPSQGAP-QRPLSTFSPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPKSL 202
Query: 98 RVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSLPP----QPKKCHY 153
V P G +G+ P + R+ R LD ++ PP +P+K
Sbjct: 203 PVPAPPGE--MGT--TPSAPPQRNRRKSVHRV--LAELDDESEPPENPPPVLMEPRK--- 253
Query: 154 CQSIMHMVANCPHKNVAQPPASSQG--RQEAESQPCTSTL-PREVGGGHGCTSP--PFPQ 208
V + P + G R P ++ + P VGGG C +P PQ
Sbjct: 254 ------------KLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLPQ 301
Query: 209 E 209
E
Sbjct: 302 E 302
>gi|117414156 transcription factor 19 [Homo sapiens]
Length = 345
Score = 32.7 bits (73), Expect = 0.30
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 40 RMGFGFISMINREGSPLDIPVDVFVHQSK--LFMEGFRSLKEGEPVEFTFKKSSKGLESI 97
R+G GF M+ +G+P P+ F K L + SL + P TF S G +S+
Sbjct: 144 RVGAGFRPMLPSQGAP-QRPLSTFSPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPKSL 202
Query: 98 RVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSLPP----QPKKCHY 153
V P G +G+ P + R+ R LD ++ PP +P+K
Sbjct: 203 PVPAPPGE--MGT--TPSAPPQRNRRKSVHRV--LAELDDESEPPENPPPVLMEPRK--- 253
Query: 154 CQSIMHMVANCPHKNVAQPPASSQG--RQEAESQPCTSTL-PREVGGGHGCTSP--PFPQ 208
V + P + G R P ++ + P VGGG C +P PQ
Sbjct: 254 ------------KLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLPQ 301
Query: 209 E 209
E
Sbjct: 302 E 302
>gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 32.7 bits (73), Expect = 0.30
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 129 CYNCGGLDHHAKECSLPPQP-------KKCHYCQSIMHMVANCP 165
CY CG +H +C P KC C + H+ +CP
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
Score = 31.6 bits (70), Expect = 0.68
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 128 RCYNCGGLDHHAKECSLPPQPK-------KCHYCQSIMHMVANCP 165
+C+ CG + H ++ C P PK C C S+ H+ +CP
Sbjct: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 32.7 bits (73), Expect = 0.30
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 129 CYNCGGLDHHAKECSLPPQP-------KKCHYCQSIMHMVANCP 165
CY CG +H +C P KC C + H+ +CP
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
Score = 31.6 bits (70), Expect = 0.68
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 128 RCYNCGGLDHHAKECSLPPQPK-------KCHYCQSIMHMVANCP 165
+C+ CG + H ++ C P PK C C S+ H+ +CP
Sbjct: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 32.7 bits (73), Expect = 0.30
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 129 CYNCGGLDHHAKECSLPPQP-------KKCHYCQSIMHMVANCP 165
CY CG +H +C P KC C + H+ +CP
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
Score = 31.6 bits (70), Expect = 0.68
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 128 RCYNCGGLDHHAKECSLPPQPK-------KCHYCQSIMHMVANCP 165
+C+ CG + H ++ C P PK C C S+ H+ +CP
Sbjct: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.40
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 165 PHKNVAQPPASSQGRQEAESQPCTSTLPREVGGGHGCTSPP 205
P +N+ Q P + + R+E E+ P +G G C +PP
Sbjct: 103 PVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPP 143
>gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo
sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.40
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 165 PHKNVAQPPASSQGRQEAESQPCTSTLPREVGGGHGCTSPP 205
P +N+ Q P + + R+E E+ P +G G C +PP
Sbjct: 103 PVQNLPQHPRAERAREEGEAHARRGVAPEWIGAGQLCCTPP 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,505,806
Number of Sequences: 37866
Number of extensions: 692298
Number of successful extensions: 2589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 254
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.