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Search of human proteins with 13378137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13378137 TNFRSF1A-associated via death domain [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13378137 TNFRSF1A-associated via death domain [Homo sapiens] 615 e-176
gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinas... 45 8e-05
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 42 7e-04
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 42 7e-04
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 39 0.008
gi|56549694 enabled homolog isoform a [Homo sapiens] 39 0.008
gi|39930375 enabled homolog isoform b [Homo sapiens] 39 0.008
gi|154448890 THO complex 1 [Homo sapiens] 39 0.008
gi|49472841 A kinase (PRKA) anchor protein 8-like [Homo sapiens] 37 0.017
gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens] 37 0.023
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens] 37 0.023
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 37 0.023
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 37 0.029
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 37 0.029
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 36 0.038
gi|23510413 sorting nexin 26 [Homo sapiens] 36 0.038
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 36 0.050
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 36 0.050
gi|5729962 submaxillary gland androgen regulated protein 3 homol... 35 0.066
gi|27734799 REST corepressor 2 [Homo sapiens] 35 0.066
gi|153792074 proline rich 12 [Homo sapiens] 35 0.066
gi|39812378 RAN binding protein 9 [Homo sapiens] 35 0.086
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 35 0.086
gi|157168329 formin 1 [Homo sapiens] 35 0.11
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 35 0.11
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens] 34 0.15
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 34 0.15
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
>gi|13378137 TNFRSF1A-associated via death domain [Homo sapiens]
Length = 312
Score = 615 bits (1587), Expect = e-176
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ 60
MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ
Sbjct: 1 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ 60
Query: 61 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA 120
MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA
Sbjct: 61 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA 120
Query: 121 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL 180
GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL
Sbjct: 121 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL 180
Query: 181 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG 240
QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG
Sbjct: 181 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG 240
Query: 241 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED 300
CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED
Sbjct: 241 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED 300
Query: 301 LLGLTDPNGGLA 312
LLGLTDPNGGLA
Sbjct: 301 LLGLTDPNGGLA 312
>gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinase 1
[Homo sapiens]
Length = 671
Score = 45.1 bits (105), Expect = 8e-05
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 207 QPVVNRPLSLKDQQT--FARSVGLKWRKVGRSLQRGCRALRDPALDSLAYEYEREGLYEQ 264
Q + + SL D+ ++G W+ R L +D + ++YER+GL E+
Sbjct: 573 QAIFDNTTSLTDKHLDPIRENLGKHWKNCARKL-----GFTQSQIDEIDHDYERDGLKEK 627
Query: 265 AFQLLRRFVQAEG-RRATLQRLVEALEENELTSLAEDLL 302
+Q+L+++V EG + AT+ +L +AL + L L+
Sbjct: 628 VYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLI 666
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 42.0 bits (97), Expect = 7e-04
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 41/146 (28%)
Query: 141 AQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPP------ 194
AQ + RDE++ ELE ++ L+ + + P PP+P + PPP
Sbjct: 514 AQAELQKRDEKIKELEAEIQQLRTQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPPLPG 573
Query: 195 -----------------PPPPAQTFLFQGQP--------------VVNRPLSLKDQQTFA 223
PPPP LF G P +N P +K ++ +
Sbjct: 574 GAPLPPPPPPLPGMMGIPPPPPPPLLFGGPPPPPPLGGVPPPPGISLNLPYGMKQKKMYK 633
Query: 224 RSVGLK---WRKV-GRSLQRGCRALR 245
V +K W K+ L C LR
Sbjct: 634 PEVSMKRINWSKIEPTELSENCFWLR 659
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 42.0 bits (97), Expect = 7e-04
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 41/146 (28%)
Query: 141 AQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPP------ 194
AQ + RDE++ ELE ++ L+ + + P PP+P + PPP
Sbjct: 514 AQAELQKRDEKIKELEAEIQQLRTQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPPLPG 573
Query: 195 -----------------PPPPAQTFLFQGQP--------------VVNRPLSLKDQQTFA 223
PPPP LF G P +N P +K ++ +
Sbjct: 574 GAPLPPPPPPLPGMMGIPPPPPPPLLFGGPPPPPPLGGVPPPPGISLNLPYGMKQKKMYK 633
Query: 224 RSVGLK---WRKV-GRSLQRGCRALR 245
V +K W K+ L C LR
Sbjct: 634 PEVSMKRINWSKIEPTELSENCFWLR 659
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 38.5 bits (88), Expect = 0.008
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 157 DALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSL 216
DA + + G+RG + L P+ LS PPPPPPP + P+++R L
Sbjct: 766 DAKPSSRSSDGSRG-----PAQALAKPLTQLSHPVPPPPPPPLPPPVPCAPPMLSRGLGH 820
Query: 217 KDQQTFARSV-GLKWRKVGRS 236
+ +T SV L+W +V S
Sbjct: 821 RRSETSHMSVKRLRWEQVENS 841
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 38.5 bits (88), Expect = 0.008
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 179 PLQPPVPSLSEVKPPPPPP-----PAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKV 233
P PP P ++V PPPPPP PA F NRPL+ A G K RKV
Sbjct: 349 PPPPPPPLPNQVPPPPPPPPAPPLPASGFFLASMSEDNRPLT----GLAAAIAGAKLRKV 404
Query: 234 GR 235
R
Sbjct: 405 SR 406
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 38.5 bits (88), Expect = 0.008
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 179 PLQPPVPSLSEVKPPPPPP-----PAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKV 233
P PP P ++V PPPPPP PA F NRPL+ A G K RKV
Sbjct: 349 PPPPPPPLPNQVPPPPPPPPAPPLPASGFFLASMSEDNRPLT----GLAAAIAGAKLRKV 404
Query: 234 GR 235
R
Sbjct: 405 SR 406
>gi|154448890 THO complex 1 [Homo sapiens]
Length = 657
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 211 NRPLSLKDQQTFARSVGLKWRKVGRSLQRGCRALRDPALDSLAYEYEREGLYEQAFQLLR 270
++P++ + + FA +G +W+ + L+ +R DS E + +A QLL
Sbjct: 566 DKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIRQIECDS-------EDMKMRAKQLLV 618
Query: 271 RFVQAEGRRATLQRLVEALEENELTSLAEDLLGLTDPN 308
+ EG AT + L+ AL ++ L+ LAE L + N
Sbjct: 619 AWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETN 656
>gi|49472841 A kinase (PRKA) anchor protein 8-like [Homo sapiens]
Length = 646
Score = 37.4 bits (85), Expect = 0.017
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 144 PDRLRDEELAE---LEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQ 200
P+ +++E AE L++ + G + G +G A P+ PP P+ V PPPPPPP +
Sbjct: 553 PEEEKEQEEAEGGALDEGAQGEAAGI-SEGAEGVPAQPPV-PPEPAPGAVSPPPPPPPEE 610
>gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]
Length = 849
Score = 37.0 bits (84), Expect = 0.023
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 161 NLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPP 198
N+ GG G A P PP+PS V PPPPPPP
Sbjct: 296 NIPLPPSKEGGTGHSALPP-PPPLPSGGGVPPPPPPPP 332
>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
Length = 1193
Score = 37.0 bits (84), Expect = 0.023
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 161 NLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPP 198
N+ GG G A P PP+PS V PPPPPPP
Sbjct: 559 NIPLPPSKEGGTGHSALPP-PPPLPSGGGVPPPPPPPP 595
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 169 RGGDGEVASAP----------LQPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRP 213
RG DG+ A+ P + PP L ++PPPPPPP L G P+ + P
Sbjct: 71 RGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAHPP 125
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.6 bits (83), Expect = 0.029
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 165 GSGARGGDGEVAS---APLQPPVPSLSEVKPPPPPPPA 199
G G R G+ A+ P PP P+ + +PPPPPPPA
Sbjct: 5 GGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPA 42
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 36.6 bits (83), Expect = 0.029
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 164 CGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPP 198
CG G+ G P P P+ S PPPPPPP
Sbjct: 138 CGGGSSGAQPSAPPPPAPPLPPTPSPPPPPPPPPP 172
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 174 EVASAPLQPPVPSLSEVKPPPPPPPA 199
E+A P PP P PPPPPPPA
Sbjct: 405 ELAGLPPPPPPPP-----PPPPPPPA 425
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 172 DGEVASAPLQPPVPSLSEVKPPPPPPPAQ---TFLFQGQPV 209
D A P QPPV + + PPPPPPP Q LFQ QP+
Sbjct: 303 DHRPALLPTQPPV--VPQAPPPPPPPPQQQPIRSLFQPQPL 341
Score = 28.9 bits (63), Expect = 6.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 181 QPPVPS--LSEVKPPPPPPPAQTFLFQGQPV 209
+P PS E + PPPPPP T L PV
Sbjct: 468 EPRFPSHLFLEQRSPPPPPPPPTLLNSSHPV 498
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 36.2 bits (82), Expect = 0.038
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 144 PDRLRDEELAELEDALRNLKCGS--GARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQT 201
P LR E A L DA + C GA+G G +PL PP SL PPPPP
Sbjct: 677 PLLLRGAE-APLTDACQQEMCSKLRGAQGPLGPDMESPLPPPPLSLLRPGGAPPPPPKNP 735
Query: 202 FLFQGQPVVNRPLSLKDQQT 221
+ R + +QQ+
Sbjct: 736 ARLMALALAERAQQVAEQQS 755
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 35.8 bits (81), Expect = 0.050
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 130 ADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVAS--APLQPPVPSL 187
++EER ILA++ + E +E A + S G + S +P P +
Sbjct: 452 SEEERKKRKILARKKSKRSALENSEEHSAKYSNSNNSAGSGASSPLTSPSSPTPPSTSGI 511
Query: 188 SEVKPPPPPPP 198
S + PPPPPPP
Sbjct: 512 SALPPPPPPPP 522
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 35.8 bits (81), Expect = 0.050
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 165 GSGARGGDGEVASAPLQPP---VPSLSEVKPPPPP-PPAQTFLFQGQP---VVNRPLS 215
GSG G AS+P +P VP S PPPPP PP++ L G+P V+RP S
Sbjct: 429 GSGPGPGTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVGDVSRPFS 486
>gi|5729962 submaxillary gland androgen regulated protein 3 homolog
B [Homo sapiens]
Length = 79
Score = 35.4 bits (80), Expect = 0.066
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 165 GSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPP 198
G RG G PL PP P PPPPPPP
Sbjct: 20 GESQRGPRGPYPPGPLAPPQPFGPGFVPPPPPPP 53
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 35.4 bits (80), Expect = 0.066
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 155 LEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPL 214
+E+A R + A D EV + VP PPPPPPP T L Q P++ PL
Sbjct: 400 MEEARRGAPLPAPALEEDDEVQITSVSTSVPRSVPPAPPPPPPP--TSLSQPPPLLRPPL 457
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 35.4 bits (80), Expect = 0.066
Identities = 37/122 (30%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 93 GALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEE------RCLSCILAQQPDR 146
GAL AA L L EL+ E L + +DEE R L ++
Sbjct: 1345 GALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISA 1404
Query: 147 LRDEELAELEDA-------LRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPA 199
L D LA +D L G G ++ P P L E KPPP PPPA
Sbjct: 1405 LDDPPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPA 1464
Query: 200 QT 201
T
Sbjct: 1465 PT 1466
Score = 33.1 bits (74), Expect = 0.33
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 179 PLQPPVPSLSEVKPPPPPPPAQTFLFQGQPVV 210
P PP P+ + +PPPPPPP Q L P+V
Sbjct: 1459 PTPPPAPT-PQPQPPPPPPPPQPALPSPPPLV 1489
Score = 30.8 bits (68), Expect = 1.6
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 175 VASAPLQPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARS 225
VA P PP P L PPPPPPA P PL+ ++ A S
Sbjct: 1489 VAPTPSSPPPPPL-----PPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPS 1534
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 179 PLQPPVPSLSEVKPPPPPPPAQTFLF--QGQPVV----------NRPLSLKDQQTFARSV 226
P PP P + PPPPPPPA L +P RPL L +Q A
Sbjct: 1499 PPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVC 1558
Query: 227 GLKWRKVGRSLQRGCRALRD 246
G + G S G RD
Sbjct: 1559 GETDEEAGESGGEGIFRERD 1578
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.0 bits (79), Expect = 0.086
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 167 GARGGDGEVASA------PLQPPVPSLSEVKPPPPPPP 198
G GG+G A+A P PP P+ + PPPPPPP
Sbjct: 53 GGAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPP 90
Score = 32.0 bits (71), Expect = 0.72
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 165 GSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPP 198
G+G G A+ L PP P PPPPPP
Sbjct: 54 GAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPP 87
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 35.0 bits (79), Expect = 0.086
Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 144 PDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQTFL 203
P EE ELE + L GS A A QPP P +PPP PPPAQ
Sbjct: 106 PPPSEGEEDEELES--QELPRGSSGAAALSPGAPASWQPPPPP----QPPPSPPPAQHAE 159
Query: 204 FQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSL 237
G V+ R F+R + L R+ GR L
Sbjct: 160 PDGDEVLLR------IPAFSRDLYLLLRRDGRFL 187
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 34.7 bits (78), Expect = 0.11
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 171 GDGEVASAPLQPPVPSLSEVKPPPPPPP 198
G G ++ AP PPV + + PPPPPPP
Sbjct: 661 GLGSLSPAPPMPPVSAGPPLPPPPPPPP 688
Score = 32.3 bits (72), Expect = 0.55
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 179 PLQPPVPSLSEVKPPPPPPP 198
P PP+P S PPPPPPP
Sbjct: 685 PPPPPLPPPSSAGPPPPPPP 704
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 34.7 bits (78), Expect = 0.11
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 173 GEVASAPLQPPVPSLSEVKPPP--PPPPAQTFLFQGQP----VVNRPLSLKDQQ---TFA 223
G+ AP PP+P LS V PPP PPPP F P P S+ D T
Sbjct: 566 GKDIPAP-SPPLPLLSGVPPPPPLPPPPPIKGPFPPPPPLPLAAPLPHSVPDSSALPTKR 624
Query: 224 RSVGLKWRKVGRSLQRGCRALRD-------PALDSLAYEYER-EGLYE-QAFQLLRRFVQ 274
++V L WR++ + G A R +LD ++ + R E L+E +A ++L
Sbjct: 625 KTVKLFWRELKLAGGHGVSASRFGPCATLWASLDPVSVDTARLEHLFESRAKEVLPSKKA 684
Query: 275 AEGRRATLQRLVEALEENEL 294
EGRR T+ +++ N +
Sbjct: 685 GEGRR-TMTTVLDPKRSNAI 703
>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
Length = 1439
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 146 RLRDEELAEL--EDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQTFL 203
R++D + +L ED + L G R G P PP P+ + PPPPPP +
Sbjct: 816 RIQDMDFTDLGEEDDIDVLDVDLGHREAPG-----PPPPPPPTFLGLPPPPPPPLLDSI- 869
Query: 204 FQGQPVVNRPLSLKDQQTFARSVGLKWRKVGR 235
P V L + F GL W +V R
Sbjct: 870 --PPPPVPGNLLVPPPPVFNAPQGLGWSQVPR 899
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 34.3 bits (77), Expect = 0.15
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 167 GARGGDGEVASAPL--QPP-----VPSLSEVKPPPPPPP 198
G GG+G A P+ QPP VP + PPPPPPP
Sbjct: 2 GKAGGEGGEAGPPMSAQPPSSADTVPGTTYPPPPPPPPP 40
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 34.3 bits (77), Expect = 0.15
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 167 GARGGDGEVASAPL--QPP-----VPSLSEVKPPPPPPP 198
G GG+G A P+ QPP VP + PPPPPPP
Sbjct: 2 GKAGGEGGEAGPPMSAQPPSSADTVPGTTYPPPPPPPPP 40
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 165 GSGARGGDGEVASAPLQPPV----PSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQ 220
G G R G G ++ P PP+ P +PPPPPPP L P R L K+
Sbjct: 204 GPGPRRGGGLTSAPPGLPPLASPPPFWELPRPPPPPPPPGPALL---PRRLRELRGKEVG 260
Query: 221 TFARSVGLKWRKVGRSLQRGCR 242
R+ G V +L+RG R
Sbjct: 261 LRPRTRGWTTCVVSPNLRRGSR 282
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 34.3 bits (77), Expect = 0.15
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 167 GARGGDGEVASAPL--QPP-----VPSLSEVKPPPPPPP 198
G GG+G A P+ QPP VP + PPPPPPP
Sbjct: 2 GKAGGEGGEAGPPMSAQPPSSADTVPGTTYPPPPPPPPP 40
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,253,330
Number of Sequences: 37866
Number of extensions: 698867
Number of successful extensions: 11324
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 7957
Number of HSP's gapped (non-prelim): 2449
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.