Guide to the Human Genome
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Name: PTPRT Sequence: fasta or formatted (1441aa) NCBI GI: 148539860
Description:

protein tyrosine phosphatase, receptor type, T isoform 2 precursor

Referenced in:

Additional Genes in Development
Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1460aa] protein tyrosine phosphatase, receptor type, T isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         91           2
 C cysteine            2.0         29           1
 D aspartate           4.6         67           2
 E glutamate           6.0         87           2
 F phenylalanine       3.5         50           1
 G glycine             6.5         93           3
 H histidine           2.5         36           2
 I isoleucine          5.3         77           3
 K lysine              4.2         61           2
 L leucine             7.9        114           3
 M methionine          1.9         28           2
 N asparagine          4.8         69           2
 P proline             6.1         88           2
 Q glutamine           4.9         71           3
 R arginine            5.8         83           3
 S serine              6.8         98           4
 T threonine           6.5         94           3
 V valine              8.1        117           2
 W tryptophan          1.6         23           1
 Y tyrosine            4.5         65           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, receptor type, T isof... 
PTPRT                 0.996   protein tyrosine phosphatase, receptor type, T isof...
PTPRM                 0.664   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.662   protein tyrosine phosphatase, receptor type, M isof...
PTPRK                 0.595   protein tyrosine phosphatase, receptor type, K isofo...
PTPRK                 0.593   protein tyrosine phosphatase, receptor type, K isof...
PTPRU                 0.526   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.520   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.517   protein tyrosine phosphatase, receptor type, U isof...
PTPRD                 0.166   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.166   protein tyrosine phosphatase, receptor type, D isofo...
PTPRF                 0.166   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.166   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.164   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.164   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.161   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.161   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.161   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.155   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.154   protein tyrosine phosphatase, receptor type, sigma ...
PTPRA                 0.140   protein tyrosine phosphatase, receptor type, A isofo...
PTPRA                 0.140   protein tyrosine phosphatase, receptor type, A isofor...
PTPRA                 0.140   protein tyrosine phosphatase, receptor type, A isofo...
PTPRE                 0.135   protein tyrosine phosphatase, receptor type, E isofor...
PTPRE                 0.135   protein tyrosine phosphatase, receptor type, E isofo...
PTPRZ1                0.126   protein tyrosine phosphatase, receptor-type, zeta1 p...
PTPRG                 0.121   protein tyrosine phosphatase, receptor type, G prec...
PTPRC                 0.113   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.113   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.113   protein tyrosine phosphatase, receptor type, C isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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