Guide to the Human Genome
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Name: SLC41A1 Sequence: fasta or formatted (513aa) NCBI GI: 51702206
Description:

solute carrier family 41 member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         45           2
 C cysteine            1.2          6           1
 D aspartate           4.5         23           2
 E glutamate           3.7         19           2
 F phenylalanine       4.9         25           2
 G glycine             9.4         48           2
 H histidine           2.1         11           1
 I isoleucine          6.8         35           2
 K lysine              1.8          9           1
 L leucine            12.5         64           2
 M methionine          3.1         16           1
 N asparagine          3.3         17           1
 P proline             6.2         32           2
 Q glutamine           2.1         11           1
 R arginine            3.5         18           2
 S serine              8.0         41           2
 T threonine           5.5         28           2
 V valine              9.0         46           2
 W tryptophan          2.1         11           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 41 member 1 
SLC41A2               0.585   solute carrier family 41, member 2 
SLC41A3               0.440   solute carrier family 41, member 3 isoform 2 
SLC41A3               0.428   solute carrier family 41, member 3 isoform 4 
SLC41A3               0.424   solute carrier family 41, member 3 isoform 1 
SLC41A3               0.355   solute carrier family 41, member 3 isoform 3 
AQP6                  0.008   aquaporin 6 
SLC22A6               0.007   solute carrier family 22 member 6 isoform d 
SLC22A6               0.007   solute carrier family 22 member 6 isoform c 
SLC22A6               0.007   solute carrier family 22 member 6 isoform b 
SLC22A6               0.007   solute carrier family 22 member 6 isoform a 
SLC5A8                0.007   solute carrier family 5 (iodide transporter), membe...
EAF1                  0.006   ELL associated factor 1 
RHCE                  0.005   Rhesus blood group, CcEe antigens isoform 3 
COL27A1               0.005   collagen, type XXVII, alpha 1 
ZNF687                0.005   zinc finger protein 687 
DIDO1                 0.005   death inducer-obliterator 1 isoform c 
RIMKLA                0.005   ribosomal modification protein rimK-like family mem...
PRG2                  0.005   plasticity-related protein 2 
GNAS                  0.005   GNAS complex locus XLas 
LOC100293408          0.005   PREDICTED: hypothetical protein 
LOC100289362          0.005   PREDICTED: hypothetical protein 
LOC100289362          0.005   PREDICTED: hypothetical protein XP_002343719 
RHD                   0.005   Rh blood group D antigen isoform 1 
SLC17A4               0.005   solute carrier family 17 (sodium phosphate), member 4...
ARHGEF15              0.005   Rho guanine exchange factor 15 
TCFL5                 0.005   transcription factor-like 5 protein 
MYLK3                 0.004   myosin light chain kinase 3 
OR6C1                 0.004   olfactory receptor, family 6, subfamily C, member 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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