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Search of human proteins with 51477723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51477723 testis expressed sequence 11 isoform 2 [Homo
sapiens]
(925 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens] 1847 0.0
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] 1821 0.0
gi|194239713 laeverin [Homo sapiens] 37 0.11
gi|81295809 pericentrin [Homo sapiens] 34 0.55
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 34 0.72
gi|89179321 smooth muscle cell associated protein-1 isoform 3 [H... 33 0.94
gi|118498356 kinectin 1 isoform a [Homo sapiens] 33 1.6
gi|118498368 kinectin 1 isoform c [Homo sapiens] 33 1.6
gi|33620775 kinectin 1 isoform a [Homo sapiens] 33 1.6
gi|29725607 smooth muscle cell associated protein-1 isoform 2 [H... 33 1.6
gi|4503729 FK506 binding protein 52 [Homo sapiens] 32 2.7
gi|218081589 anoctamin 5 isoform b [Homo sapiens] 32 2.7
gi|47106048 anoctamin 5 isoform a [Homo sapiens] 32 2.7
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 32 3.6
gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2... 31 4.7
gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens] 31 4.7
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho... 31 6.1
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 31 6.1
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho... 31 6.1
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 31 6.1
gi|116008447 CAP-GLY domain containing linker protein 2 isoform ... 31 6.1
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 31 6.1
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 31 6.1
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 31 6.1
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 31 6.1
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 31 6.1
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 31 6.1
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 31 6.1
gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens] 30 7.9
gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens] 30 7.9
>gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens]
Length = 925
Score = 1847 bits (4785), Expect = 0.0
Identities = 925/925 (100%), Positives = 925/925 (100%)
Query: 1 MDNDDFFSMDFKEVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVN 60
MDNDDFFSMDFKEVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVN
Sbjct: 1 MDNDDFFSMDFKEVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVN 60
Query: 61 LWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDA 120
LWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDA
Sbjct: 61 LWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDA 120
Query: 121 GNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQG 180
GNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQG
Sbjct: 121 GNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQG 180
Query: 181 DFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMD 240
DFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMD
Sbjct: 181 DFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMD 240
Query: 241 KKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGE 300
KKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGE
Sbjct: 241 KKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGE 300
Query: 301 TSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVL 360
TSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVL
Sbjct: 301 TSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVL 360
Query: 361 ILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTD 420
ILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTD
Sbjct: 361 ILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTD 420
Query: 421 ALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQF 480
ALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQF
Sbjct: 421 ALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQF 480
Query: 481 YIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQ 540
YIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQ
Sbjct: 481 YIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQ 540
Query: 541 IVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFV 600
IVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFV
Sbjct: 541 IVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFV 600
Query: 601 KLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQV 660
KLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQV
Sbjct: 601 KLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQV 660
Query: 661 ILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDS 720
ILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDS
Sbjct: 661 ILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDS 720
Query: 721 CEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKA 780
CEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKA
Sbjct: 721 CEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKA 780
Query: 781 LKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRT 840
LKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRT
Sbjct: 781 LKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRT 840
Query: 841 KDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLY 900
KDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLY
Sbjct: 841 KDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLY 900
Query: 901 SQLVEALSNNKGPVFHEHGYWSKSD 925
SQLVEALSNNKGPVFHEHGYWSKSD
Sbjct: 901 SQLVEALSNNKGPVFHEHGYWSKSD 925
>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
Length = 940
Score = 1821 bits (4718), Expect = 0.0
Identities = 913/913 (100%), Positives = 913/913 (100%)
Query: 13 EVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVNLWNWALTIGGGW 72
EVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVNLWNWALTIGGGW
Sbjct: 28 EVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVNLWNWALTIGGGW 87
Query: 73 LVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDAGNFLIADECFQA 132
LVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDAGNFLIADECFQA
Sbjct: 88 LVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDAGNFLIADECFQA 147
Query: 133 AVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVLQC 192
AVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVLQC
Sbjct: 148 AVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVLQC 207
Query: 193 KDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKV 252
KDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKV
Sbjct: 208 KDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKV 267
Query: 253 LRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGETSNEELLEAVME 312
LRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGETSNEELLEAVME
Sbjct: 268 LRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGETSNEELLEAVME 327
Query: 313 ILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVLILHTDMLLQRKE 372
ILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVLILHTDMLLQRKE
Sbjct: 328 ILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVLILHTDMLLQRKE 387
Query: 373 ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRFY 432
ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRFY
Sbjct: 388 ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRFY 447
Query: 433 STDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNS 492
STDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNS
Sbjct: 448 STDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNS 507
Query: 493 ERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQIVAEKALEYLAQ 552
ERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQIVAEKALEYLAQ
Sbjct: 508 ERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQIVAEKALEYLAQ 567
Query: 553 HSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLSQPFGEEALS 612
HSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLSQPFGEEALS
Sbjct: 568 HSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLSQPFGEEALS 627
Query: 613 LESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQVILIARKTCLLMA 672
LESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQVILIARKTCLLMA
Sbjct: 628 LESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQVILIARKTCLLMA 687
Query: 673 VAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDSCEKLLLLYEFEV 732
VAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDSCEKLLLLYEFEV
Sbjct: 688 VAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDSCEKLLLLYEFEV 747
Query: 733 RAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKALKKALLLYKKEE 792
RAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKALKKALLLYKKEE
Sbjct: 748 RAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKALKKALLLYKKEE 807
Query: 793 PIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRTKDYPEMEILWLM 852
PIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRTKDYPEMEILWLM
Sbjct: 808 PIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRTKDYPEMEILWLM 867
Query: 853 VKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLYSQLVEALSNNKG 912
VKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLYSQLVEALSNNKG
Sbjct: 868 VKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLYSQLVEALSNNKG 927
Query: 913 PVFHEHGYWSKSD 925
PVFHEHGYWSKSD
Sbjct: 928 PVFHEHGYWSKSD 940
>gi|194239713 laeverin [Homo sapiens]
Length = 990
Score = 36.6 bits (83), Expect = 0.11
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 354 ENIGKVLILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAE--SMNWLHNILWRQAAS 411
EN G ++ + +LL+ K++L K+ + ++H+ G Q +MNW +NI + +
Sbjct: 382 ENWGLMIFDESGLLLEPKDQLTEKKTLISYVVSHEIGHQWFGNLVTMNWWNNIWLNEGFA 441
Query: 412 S---FEVQNY 418
S FEV NY
Sbjct: 442 SYFEFEVINY 451
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 34.3 bits (77), Expect = 0.55
Identities = 69/265 (26%), Positives = 103/265 (38%), Gaps = 59/265 (22%)
Query: 151 EADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVLQCKDMLMRLPQMTSSLHHLC 210
E +L +K+ + D F L+ Q ESA Q VL ++ + RL +M ++
Sbjct: 1528 EVELLQQKLREKLDEFNELAIQKESADRQ---------VLMQEEEIKRLEEMNINIRKKV 1578
Query: 211 YNFG--VETQKN------------NKYEESSFWLSQSY----DIGKMDKKSTGPEMLAKV 252
VE QKN K + SS L+ + D G+ + +G
Sbjct: 1579 AQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPE 1638
Query: 253 LRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGETSNEELLEAVME 312
++L T A+ E L KMK L E+ NEE
Sbjct: 1639 IQLEVTQ--------------RALLRRESEVLDLKEQLEKMKGDL--ESKNEE------- 1675
Query: 313 ILHLDMPLDFCLN-IAKLLMDHERESVGFHFLTIIHERFKSSENIGKVLILHTDMLLQRK 371
ILHL++ LD + A L + E E+ L +I+ R E + K I + LQ
Sbjct: 1676 ILHLNLKLDMQNSQTAVSLRELEEENTS---LKVIYTRSSEIEEL-KATIEN----LQEN 1727
Query: 372 EELLAKEKIEEIFLAHQTGRQLTAE 396
++ L KEK EEI H+ +L E
Sbjct: 1728 QKRLQKEKAEEIEQLHEVIEKLQHE 1752
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 33.9 bits (76), Expect = 0.72
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 537 NGQQIVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLN 596
N + ++ E +E +H ED ++ ++C+ + LL + +E+ E++ E + L+C
Sbjct: 1397 NVESLMTELEIEKSLKHHED---IVDEIECIEKTLLKRRSELREADRLLAEAESELSCTK 1453
Query: 597 RAFVKLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMR 642
+ F + SL ++A+ + A AV K +R
Sbjct: 1454 EKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLR 1499
>gi|89179321 smooth muscle cell associated protein-1 isoform 3 [Homo
sapiens]
Length = 929
Score = 33.5 bits (75), Expect = 0.94
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 393 LTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRFYSTDEMDLDFTKLQRNMACCY 452
+TA S+ L ++ F+ +Y AL Y +L +T + D L RN A C+
Sbjct: 1 MTASSVEQLR----KEGNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACH 53
Query: 453 LNLQQLDKAKEAVAEAERHDPRNV 476
L L+ DKA+ ++A D +V
Sbjct: 54 LKLEDYDKAETEASKAIEKDGGDV 77
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.7 bits (73), Expect = 1.6
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 247 EMLAKVLRLLATNYLDWDDTKYYDKALNA----VNLANKEHLSSPGLFLKMKILLKGETS 302
E+L L +A D K KAL V L + LS +++ LLKG+
Sbjct: 815 ELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEE 874
Query: 303 NEELLEAVMEILHLDMPLDFCLNIAKLLMD--HERESVGFHFLTIIHERFKSSENIGKVL 360
++AV+E D+ N K L D E ES+ H + K + + +
Sbjct: 875 QMNTMKAVLEEKEKDL-----ANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFE 929
Query: 361 ILHTDMLLQRKE------ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFE 414
L +++L+ KE E + KE+ ++ Q + + E N L++ +
Sbjct: 930 EL--EIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDE------NKLFKSQIEQLK 981
Query: 415 VQNYTDA 421
QNY A
Sbjct: 982 QQNYQQA 988
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 32.7 bits (73), Expect = 1.6
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 247 EMLAKVLRLLATNYLDWDDTKYYDKALNA----VNLANKEHLSSPGLFLKMKILLKGETS 302
E+L L +A D K KAL V L + LS +++ LLKG+
Sbjct: 815 ELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEE 874
Query: 303 NEELLEAVMEILHLDMPLDFCLNIAKLLMD--HERESVGFHFLTIIHERFKSSENIGKVL 360
++AV+E D+ N K L D E ES+ H + K + + +
Sbjct: 875 QMNTMKAVLEEKEKDL-----ANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFE 929
Query: 361 ILHTDMLLQRKE------ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFE 414
L +++L+ KE E + KE+ ++ Q + + E N L++ +
Sbjct: 930 EL--EIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDE------NKLFKSQIEQLK 981
Query: 415 VQNYTDA 421
QNY A
Sbjct: 982 QQNYQQA 988
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.7 bits (73), Expect = 1.6
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 247 EMLAKVLRLLATNYLDWDDTKYYDKALNA----VNLANKEHLSSPGLFLKMKILLKGETS 302
E+L L +A D K KAL V L + LS +++ LLKG+
Sbjct: 815 ELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEE 874
Query: 303 NEELLEAVMEILHLDMPLDFCLNIAKLLMD--HERESVGFHFLTIIHERFKSSENIGKVL 360
++AV+E D+ N K L D E ES+ H + K + + +
Sbjct: 875 QMNTMKAVLEEKEKDL-----ANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFE 929
Query: 361 ILHTDMLLQRKE------ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFE 414
L +++L+ KE E + KE+ ++ Q + + E N L++ +
Sbjct: 930 EL--EIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDE------NKLFKSQIEQLK 981
Query: 415 VQNYTDA 421
QNY A
Sbjct: 982 QQNYQQA 988
>gi|29725607 smooth muscle cell associated protein-1 isoform 2 [Homo
sapiens]
Length = 944
Score = 32.7 bits (73), Expect = 1.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 405 LWRQAASSFEVQNYTDALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEA 464
L ++ F+ +Y AL Y +L +T + D L RN A C+L L+ DKA+
Sbjct: 24 LRKEGNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETE 80
Query: 465 VAEAERHDPRNV 476
++A D +V
Sbjct: 81 ASKAIEKDGGDV 92
>gi|4503729 FK506 binding protein 52 [Homo sapiens]
Length = 459
Score = 32.0 bits (71), Expect = 2.7
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 305 ELLEAVMEILHLDMPLDFCLNIAKLLMDHERESV-----GFHFLTIIHERFKSSENIGKV 359
EL + E +LD+P + L A M+ S+ + F ++ E+F+ N
Sbjct: 187 ELRFEIGEGENLDLP--YGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELK 244
Query: 360 LILHTDMLLQRKE--ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQN 417
LH + KE E+ ++EK+E+ + + G + +++ +
Sbjct: 245 YELHLKSFEKAKESWEMNSEEKLEQSTIVKERG------------TVYFKEGKYKQALLQ 292
Query: 418 YTDALQWYYYSLRFYSTDEMDLDFTKLQR--NMACCYLNLQQLDKAKEAVAEAERHDPRN 475
Y + W Y F + + +L N+A C+L LQ A E+ +A D N
Sbjct: 293 YKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 352
>gi|218081589 anoctamin 5 isoform b [Homo sapiens]
Length = 912
Score = 32.0 bits (71), Expect = 2.7
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 140 LYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVLQCKDMLMRL 199
LY ++ A +T+ V + V+ Y+ F + + Q K L
Sbjct: 451 LYTRIPWYFLSGATVTLWMSLVVTSMVAVIVYRLSVFATFASFMESDASLKQVKSFLT-- 508
Query: 200 PQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQ 232
PQ+T+SL C NF V N YE+ S W+++
Sbjct: 509 PQITTSLTGSCLNFIVILILNFFYEKISAWITK 541
>gi|47106048 anoctamin 5 isoform a [Homo sapiens]
Length = 913
Score = 32.0 bits (71), Expect = 2.7
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 140 LYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVLQCKDMLMRL 199
LY ++ A +T+ V + V+ Y+ F + + Q K L
Sbjct: 452 LYTRIPWYFLSGATVTLWMSLVVTSMVAVIVYRLSVFATFASFMESDASLKQVKSFLT-- 509
Query: 200 PQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQ 232
PQ+T+SL C NF V N YE+ S W+++
Sbjct: 510 PQITTSLTGSCLNFIVILILNFFYEKISAWITK 542
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 31.6 bits (70), Expect = 3.6
Identities = 98/464 (21%), Positives = 171/464 (36%), Gaps = 60/464 (12%)
Query: 134 VASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRA-SMCVLQC 192
V L++L + + + LT + E D+ ++ E +V++ + Q L C
Sbjct: 287 VQELQKLKSSVNELTQKNQTLTENLLKKEQDYTKLEEKHNEESVSKKNIQATLHQKDLDC 346
Query: 193 KDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKV 252
+ + RL +SLH + + + K +E + Y K + K + K
Sbjct: 347 QQLQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKE 406
Query: 253 LRLLATNYLDWDDTKYYDKALNAVNLANKEH--------LSSPGLFLKMK----ILLKGE 300
L L + + + K L + H LSS L K + + LK
Sbjct: 407 QHGL---QLQSEINQLHSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLS 463
Query: 301 TSNEELLEAVMEILHLDMPLDFCLNIAKLLMDH-ERESVGFHFLTIIHERFKSSENIGKV 359
E+L E V L LD K H E++++ + E E + +
Sbjct: 464 RLEEQLKEKVTNSTELQHQLD------KTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQ 517
Query: 360 L------ILHTDMLLQRKEE---LLAKEKIEEIFLAHQTGRQLTA-------------ES 397
+ I + + LLQ+ +E LL KE+ E+++ Q G TA E
Sbjct: 518 IGDKDQKIQNLEALLQKSKENISLLEKER-EDLYAKIQAGEGETAVLNQLQEKNHTLQEQ 576
Query: 398 MNWLHNILWRQAASSFEVQ-NYTDALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQ 456
+ L L Q+ S + Q N D +Q LR + L+ + + N
Sbjct: 577 VTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSLETSVNELN--------S 628
Query: 457 QLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNSERALQAIITLENILTDEESEDNDL 516
QL+++KE V++ + T+ + A + T +N L D++ E N +
Sbjct: 629 QLNESKEKVSQLDIQIKAK--TELLLSAEAAKTAQRADLQNHLDTAQNALQDKQQELNKI 686
Query: 517 VAERGSPTMLLSLAAQFA--LENGQQIVAEKALEYLAQHSEDQE 558
+ T L + LE+ + EK L L Q +E+ E
Sbjct: 687 TTQLDQVTAKLQDKQEHCSQLESHLKEYKEKYLS-LEQKTEELE 729
>gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2
[Homo sapiens]
Length = 1011
Score = 31.2 bits (69), Expect = 4.7
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 99 SEQSIQRLIMMNMRIGKEWLDAGNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEK 158
+E+ +QR ++ + KE +D N L + +E L ++ + S + DL +
Sbjct: 410 AEEKLQRARLLVESVRKEKVDLSNQLEEER------RKVEDLQFRVEEESITKGDL---E 460
Query: 159 ITVESDHFRVLSYQAESAVAQGDFQRASMCVL 190
+T ++ RVL + E + +G+ + C+L
Sbjct: 461 LTTVAEKSRVLQLEEELTLRRGEIEELQQCLL 492
>gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]
Length = 245
Score = 31.2 bits (69), Expect = 4.7
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 184 RASMCVLQCKDM---LMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMD 240
RAS +L+ M L+ L ++ +++ + ++ N YE++ L Q G D
Sbjct: 84 RASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKNNYEKA---LKQYNSTG--D 138
Query: 241 KKSTGPEMLAKVLRLLA-TNYLDWDDTKYYD---------KALNAVNLANKEHLSSPGLF 290
+S + + L T+Y DW DT YY K + + + +++ G F
Sbjct: 139 YRSHAVDKIQNTLHCCGVTDYRDWTDTNYYSEKGFPKSCCKLEDCTPQRDADKVNNEGCF 198
Query: 291 LKMKILLKGE 300
+K+ +++ E
Sbjct: 199 IKVMTIIESE 208
>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
sapiens]
Length = 638
Score = 30.8 bits (68), Expect = 6.1
Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 13/278 (4%)
Query: 131 QAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVL 190
Q SLE+ K+ Q + EKI +S+ ++L Y E + A ++ + +
Sbjct: 110 QVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIA 169
Query: 191 QCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLA 250
Q ++ L SL V K + L + +++ E L
Sbjct: 170 QLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLN 229
Query: 251 KVLRLLATNYL--DWDDTKYYDKALNAVNLANKEHLSSPGLFLKM-----KILLKGETSN 303
++ L ++ + K K L +L +E S L K+ +++ +
Sbjct: 230 AEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFE 289
Query: 304 EELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSE-NIGKVLIL 362
EEL + + E+ L + + K L + + L ++ E+ K E + K
Sbjct: 290 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRA--EELKLLEEKLKGKEAELEKSSAA 347
Query: 363 HTD--MLLQRKEELLAKEKIEEIFLAHQTGRQLTAESM 398
HT +LLQ K + + + +E++ ++ + LTA +
Sbjct: 348 HTQATLLLQEKYDSMV-QSLEDVTAQFESYKALTASEI 384
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 6.1
Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 13/278 (4%)
Query: 131 QAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVL 190
Q SLE+ K+ Q + EKI +S+ ++L Y E + A ++ + +
Sbjct: 197 QVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIA 256
Query: 191 QCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLA 250
Q ++ L SL V K + L + +++ E L
Sbjct: 257 QLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLN 316
Query: 251 KVLRLLATNYL--DWDDTKYYDKALNAVNLANKEHLSSPGLFLKM-----KILLKGETSN 303
++ L ++ + K K L +L +E S L K+ +++ +
Sbjct: 317 AEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFE 376
Query: 304 EELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSE-NIGKVLIL 362
EEL + + E+ L + + K L + + L ++ E+ K E + K
Sbjct: 377 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRA--EELKLLEEKLKGKEAELEKSSAA 434
Query: 363 HTD--MLLQRKEELLAKEKIEEIFLAHQTGRQLTAESM 398
HT +LLQ K + + + +E++ ++ + LTA +
Sbjct: 435 HTQATLLLQEKYDSMV-QSLEDVTAQFESYKALTASEI 471
>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 6.1
Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 13/278 (4%)
Query: 131 QAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVL 190
Q SLE+ K+ Q + EKI +S+ ++L Y E + A ++ + +
Sbjct: 181 QVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIA 240
Query: 191 QCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLA 250
Q ++ L SL V K + L + +++ E L
Sbjct: 241 QLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLN 300
Query: 251 KVLRLLATNYL--DWDDTKYYDKALNAVNLANKEHLSSPGLFLKM-----KILLKGETSN 303
++ L ++ + K K L +L +E S L K+ +++ +
Sbjct: 301 AEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFE 360
Query: 304 EELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSE-NIGKVLIL 362
EEL + + E+ L + + K L + + L ++ E+ K E + K
Sbjct: 361 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRA--EELKLLEEKLKGKEAELEKSSAA 418
Query: 363 HTD--MLLQRKEELLAKEKIEEIFLAHQTGRQLTAESM 398
HT +LLQ K + + + +E++ ++ + LTA +
Sbjct: 419 HTQATLLLQEKYDSMV-QSLEDVTAQFESYKALTASEI 455
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 30.8 bits (68), Expect = 6.1
Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 13/278 (4%)
Query: 131 QAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQRASMCVL 190
Q SLE+ K+ Q + EKI +S+ ++L Y E + A ++ + +
Sbjct: 196 QVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIA 255
Query: 191 QCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLA 250
Q ++ L SL V K + L + +++ E L
Sbjct: 256 QLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLN 315
Query: 251 KVLRLLATNYL--DWDDTKYYDKALNAVNLANKEHLSSPGLFLKM-----KILLKGETSN 303
++ L ++ + K K L +L +E S L K+ +++ +
Sbjct: 316 AEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFE 375
Query: 304 EELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSE-NIGKVLIL 362
EEL + + E+ L + + K L + + L ++ E+ K E + K
Sbjct: 376 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRA--EELKLLEEKLKGKEAELEKSSAA 433
Query: 363 HTD--MLLQRKEELLAKEKIEEIFLAHQTGRQLTAESM 398
HT +LLQ K + + + +E++ ++ + LTA +
Sbjct: 434 HTQATLLLQEKYDSMV-QSLEDVTAQFESYKALTASEI 470
>gi|116008447 CAP-GLY domain containing linker protein 2 isoform 1
[Homo sapiens]
Length = 1046
Score = 30.8 bits (68), Expect = 6.1
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 100 EQSIQRLIMMNMRIGKEWLDAGNFLIADECFQAAVASLEQ-LYVKLIQRSSPEADLTMEK 158
E+ +++ + R+ +E + G+ + A + LEQ L ++ Q +L +
Sbjct: 436 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNR 495
Query: 159 ITVESDHFRVLSYQAESAVAQGDFQRASMCVL 190
+T ++ RVL + E + +G+ + C+L
Sbjct: 496 LTTVAEKSRVLQLEEELTLRRGEIEELQQCLL 527
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 30.8 bits (68), Expect = 6.1
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 544 EKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLS 603
EKA + ++ E QE+++ L + + ++ E+ED K+ M+R++ LN+ +LS
Sbjct: 596 EKAFLF-EKYQEAQEEIMKLKDTLKSQMTQEASD--EAEDMKEAMNRMIDELNKQVSELS 652
Query: 604 QPFGEEALSLE 614
Q + E LE
Sbjct: 653 QLYKEAQAELE 663
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 30.8 bits (68), Expect = 6.1
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 544 EKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLS 603
EKA + ++ E QE+++ L + + ++ E+ED K+ M+R++ LN+ +LS
Sbjct: 585 EKAFLF-EKYQEAQEEIMKLKDTLKSQMTQEASD--EAEDMKEAMNRMIDELNKQVSELS 641
Query: 604 QPFGEEALSLE 614
Q + E LE
Sbjct: 642 QLYKEAQAELE 652
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 30.8 bits (68), Expect = 6.1
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 544 EKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLS 603
EKA + ++ E QE+++ L + + ++ E+ED K+ M+R++ LN+ +LS
Sbjct: 564 EKAFLF-EKYQEAQEEIMKLKDTLKSQMTQEASD--EAEDMKEAMNRMIDELNKQVSELS 620
Query: 604 QPFGEEALSLE 614
Q + E LE
Sbjct: 621 QLYKEAQAELE 631
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 30.8 bits (68), Expect = 6.1
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 544 EKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLS 603
EKA + ++ E QE+++ L + + ++ E+ED K+ M+R++ LN+ +LS
Sbjct: 593 EKAFLF-EKYQEAQEEIMKLKDTLKSQMTQEASD--EAEDMKEAMNRMIDELNKQVSELS 649
Query: 604 QPFGEEALSLE 614
Q + E LE
Sbjct: 650 QLYKEAQAELE 660
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 30.8 bits (68), Expect = 6.1
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 544 EKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLS 603
EKA + ++ E QE+++ L + + ++ E+ED K+ M+R++ LN+ +LS
Sbjct: 593 EKAFLF-EKYQEAQEEIMKLKDTLKSQMTQEASD--EAEDMKEAMNRMIDELNKQVSELS 649
Query: 604 QPFGEEALSLE 614
Q + E LE
Sbjct: 650 QLYKEAQAELE 660
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 30.8 bits (68), Expect = 6.1
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 544 EKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLS 603
EKA + ++ E QE+++ L + + ++ E+ED K+ M+R++ LN+ +LS
Sbjct: 593 EKAFLF-EKYQEAQEEIMKLKDTLKSQMTQEASD--EAEDMKEAMNRMIDELNKQVSELS 649
Query: 604 QPFGEEALSLE 614
Q + E LE
Sbjct: 650 QLYKEAQAELE 660
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 30.8 bits (68), Expect = 6.1
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 12/177 (6%)
Query: 614 ESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQVILIARKTCLL--- 670
+ +A++ QW+ + L QC + + + + + + QV++ A +C +
Sbjct: 296 KQQADDLQWYHQELGQLKRQCQEKLTRVEKEWRRFQALKK-----QVVMQAMGSCRMRGG 350
Query: 671 -MAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDSCEKLLLLYE 729
A ++EQ + E+ M R LE IQ + +F +T + + + LLL +
Sbjct: 351 RQAALREVEQIQALEDKKEKEMSAVR-LENIQLKQSLVHF--ETRMRTQEDLTQGLLLID 407
Query: 730 FEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKALKKALL 786
FE N E E EL L +K ++ +I K + + A KK L
Sbjct: 408 FEQLKIENQTFNEKIEERNEELLKLRSKVTNSVQVITHVKEKLHFMDMENACKKTQL 464
>gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens]
Length = 969
Score = 30.4 bits (67), Expect = 7.9
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 804 HNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRTKDYPEME--ILWLMVKSWNTGVL 861
H+LV DG V P + V G+ + H+++ K + +E + ++ +N G+L
Sbjct: 112 HSLVGKHCEDGICTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLL 171
Query: 862 MFSRSKYASAE 872
+ Y AE
Sbjct: 172 VHPDLAYLQAE 182
>gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens]
Length = 285
Score = 30.4 bits (67), Expect = 7.9
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 21/139 (15%)
Query: 137 LEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQGDFQR----ASMCVLQC 192
L+++ +K + + EAD E++ + + +GD +R A + +C
Sbjct: 144 LQEIQLKEAKHIAEEADRKYEEVA------------RKLVIIEGDLERTEERAELAESKC 191
Query: 193 KDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKV 252
++ L +T++L L +QK +KYEE L+ K+ + T E +
Sbjct: 192 SELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTD-----KLKEAETRAEFAERS 246
Query: 253 LRLLATNYLDWDDTKYYDK 271
+ L D +D Y K
Sbjct: 247 VAKLEKTIDDLEDELYAQK 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,407,379
Number of Sequences: 37866
Number of extensions: 1256362
Number of successful extensions: 3372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3360
Number of HSP's gapped (non-prelim): 39
length of query: 925
length of database: 18,247,518
effective HSP length: 112
effective length of query: 813
effective length of database: 14,006,526
effective search space: 11387305638
effective search space used: 11387305638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.