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Search of human proteins with 50952466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50952466 host cell factor C1 regulator 1 (XPO1 dependant)
isoform 2 [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50952466 host cell factor C1 regulator 1 (XPO1 dependant) iso... 251 9e-68
gi|8923536 host cell factor C1 regulator 1 (XPO1 dependant) isof... 238 8e-64
gi|50952468 host cell factor C1 regulator 1 (XPO1 dependant) iso... 238 8e-64
gi|239742763 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|153946393 macrophage stimulating 1 receptor precursor [Homo s... 30 0.42
gi|239740974 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|89353283 serologically defined colon cancer antigen 3 isoform... 29 0.72
gi|89353281 serologically defined colon cancer antigen 3 isoform... 29 0.72
gi|89353278 serologically defined colon cancer antigen 3 isoform... 29 0.72
gi|31542509 ADP-dependent glucokinase [Homo sapiens] 29 0.94
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 28 1.2
gi|190610047 late cornified envelope 6A [Homo sapiens] 28 1.2
gi|20149646 hypothetical protein LOC54964 [Homo sapiens] 28 1.2
gi|239744254 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 28 1.6
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 28 1.6
gi|145309320 forkhead box Q1 [Homo sapiens] 28 2.1
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 28 2.1
gi|169206277 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|169206560 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239747276 PREDICTED: hypothetical protein XP_002346410 [Homo ... 28 2.1
gi|169205714 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens] 28 2.1
gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens] 28 2.1
gi|236459851 ubinuclein 2 [Homo sapiens] 27 2.7
gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo sap... 27 2.7
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 27 2.7
gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo ... 27 2.7
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ... 27 2.7
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 27 2.7
>gi|50952466 host cell factor C1 regulator 1 (XPO1 dependant)
isoform 2 [Homo sapiens]
Length = 119
Score = 251 bits (641), Expect = 9e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MILQQPLQRGPQGGAQRLPRAALGVTWGLDAREPLRKQFLSEENMATHFSQLSLHNDHPY 60
MILQQPLQRGPQGGAQRLPRAALGVTWGLDAREPLRKQFLSEENMATHFSQLSLHNDHPY
Sbjct: 1 MILQQPLQRGPQGGAQRLPRAALGVTWGLDAREPLRKQFLSEENMATHFSQLSLHNDHPY 60
Query: 61 CSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAGDIMEL 119
CSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAGDIMEL
Sbjct: 61 CSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAGDIMEL 119
>gi|8923536 host cell factor C1 regulator 1 (XPO1 dependant) isoform
1 [Homo sapiens]
Length = 138
Score = 238 bits (607), Expect = 8e-64
Identities = 118/138 (85%), Positives = 119/138 (86%), Gaps = 19/138 (13%)
Query: 1 MILQQPLQRGPQGGAQRLPRAALGVTWGLDA-------------------REPLRKQFLS 41
MILQQPLQRGPQGGAQRLPRAALGVTWGLDA +EPLRKQFLS
Sbjct: 1 MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLS 60
Query: 42 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG 101
EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG
Sbjct: 61 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG 120
Query: 102 DTPSPPYPATPAGDIMEL 119
DTPSPPYPATPAGDIMEL
Sbjct: 121 DTPSPPYPATPAGDIMEL 138
>gi|50952468 host cell factor C1 regulator 1 (XPO1 dependant)
isoform 1 [Homo sapiens]
Length = 138
Score = 238 bits (607), Expect = 8e-64
Identities = 118/138 (85%), Positives = 119/138 (86%), Gaps = 19/138 (13%)
Query: 1 MILQQPLQRGPQGGAQRLPRAALGVTWGLDA-------------------REPLRKQFLS 41
MILQQPLQRGPQGGAQRLPRAALGVTWGLDA +EPLRKQFLS
Sbjct: 1 MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLS 60
Query: 42 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG 101
EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG
Sbjct: 61 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG 120
Query: 102 DTPSPPYPATPAGDIMEL 119
DTPSPPYPATPAGDIMEL
Sbjct: 121 DTPSPPYPATPAGDIMEL 138
>gi|239742763 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 30.4 bits (67), Expect = 0.32
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 41 SEENMATHFSQLSLHNDH-PYCSPPMTFSPALPPLRSPCSEL-----------LLWRYPG 88
S + T SQ LH H P+C PP S +P S L L +PG
Sbjct: 86 SASTVPTSASQQILHAQHLPHCGPPKPSSQPFSSFYTPSSRLPVASSGPWGSFLTTAFPG 145
Query: 89 SLIP--EALRLLRLGDTPSPPYPATPAG 114
+ P LR L + SP P P+G
Sbjct: 146 PVFPFRRPLRAQNLLKSASPD-PLAPSG 172
>gi|153946393 macrophage stimulating 1 receptor precursor [Homo
sapiens]
Length = 1400
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 53 SLHNDHPYCSPPMT-FSPALPPLRSPCSELL----LWRYPGSLIPEALRLLRLGDTPSPP 107
S DH C P +T F P PLR L + +P L+PE + +G +P P
Sbjct: 561 SWQQDH--CPPKLTEFHPHSGPLRGSTRLTLCGSNFYLHPSGLVPEGTHQVTVGQSPCRP 618
Query: 108 YP 109
P
Sbjct: 619 LP 620
>gi|239740974 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 29.6 bits (65), Expect = 0.55
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 41 SEENMATHFSQLSLHNDH-PYCSPPMTFSPALPPLRSPCSEL-----------LLWRYPG 88
S + T SQ LH H P+C PP S +P S L L +PG
Sbjct: 86 SASAVPTSASQQILHAQHLPHCGPPKPSSQPFSSFYTPSSRLPVASSGPWGSFLTTAFPG 145
Query: 89 SLIP--EALRLLRLGDTPSPPYPATPAG 114
+ P LR L + SP P P+G
Sbjct: 146 PVFPFRRPLRAQNLLKSASPD-PLAPSG 172
>gi|89353283 serologically defined colon cancer antigen 3 isoform 3
[Homo sapiens]
Length = 362
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 66 TFSPALPPLRSPCSELL-LWRYPGSLI-PEALRLLRLGDTPSPPYPATPAG 114
T +P SPCS L + P L PE+L L DT S PA+PAG
Sbjct: 123 THPERVPAGTSPCSTYLSFFSTPSELAGPESLPSWALSDTDSRVSPASPAG 173
>gi|89353281 serologically defined colon cancer antigen 3 isoform 1
[Homo sapiens]
Length = 435
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 66 TFSPALPPLRSPCSELL-LWRYPGSLI-PEALRLLRLGDTPSPPYPATPAG 114
T +P SPCS L + P L PE+L L DT S PA+PAG
Sbjct: 196 THPERVPAGTSPCSTYLSFFSTPSELAGPESLPSWALSDTDSRVSPASPAG 246
>gi|89353278 serologically defined colon cancer antigen 3 isoform 2
[Homo sapiens]
Length = 412
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 66 TFSPALPPLRSPCSELL-LWRYPGSLI-PEALRLLRLGDTPSPPYPATPAG 114
T +P SPCS L + P L PE+L L DT S PA+PAG
Sbjct: 173 THPERVPAGTSPCSTYLSFFSTPSELAGPESLPSWALSDTDSRVSPASPAG 223
>gi|31542509 ADP-dependent glucokinase [Homo sapiens]
Length = 496
Score = 28.9 bits (63), Expect = 0.94
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 78 CSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAG 114
C LL PGS + L LG P+PP P +P G
Sbjct: 19 CVFLLEPELPGSALRSLWSSLCLGPAPAPPGPVSPEG 55
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 41 SEENMATHFSQLSLHNDHPYCS----PPMTFSPALPPLRSPCSELLLWRYPGSLIPEALR 96
SEE + +S +S H P S PP+ F A P RS R P + + L
Sbjct: 734 SEEGSSLTYSSISDHIPPPPLSPPPPPPLPFHDAKPSSRSSDGS----RGPAQALAKPLT 789
Query: 97 LLRLGDTPSPPYPATP 112
L P PP P P
Sbjct: 790 QLSHPVPPPPPPPLPP 805
>gi|190610047 late cornified envelope 6A [Homo sapiens]
Length = 80
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 59 PYCSPPMTFSPALPPLRSPC 78
P CSPP +P L P +PC
Sbjct: 15 PKCSPPQRSNPCLAPYSTPC 34
>gi|20149646 hypothetical protein LOC54964 [Homo sapiens]
Length = 341
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 34 PLRKQFLSEENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWR 85
PL ++ N A+ + + P+ + + SP+LPP SPC L W+
Sbjct: 263 PLDTSLCTDTNCASQSTTSTRTTTTPFPTIHLRSSPSLPP-ASPCPALAFWK 313
>gi|239744254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 41 SEENMATHFSQLSLHNDH-PYCSPPMTFSPALPPLRSPCSEL-----------LLWRYPG 88
S + T SQ LH H P+C PP S +P S L L +PG
Sbjct: 86 SASTVPTSASQQILHAQHLPHCGPPKPSSQPFSSFYTPSSRLPVASSGPWGSFLTTAFPG 145
Query: 89 SLIP--EALRLLRLGDTPSPPYPATPA 113
+ P LR L + SP P P+
Sbjct: 146 PVFPFRRPLRAQNLLKSASPD-PLAPS 171
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 69 PALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAG 114
P L P P R PG+L R +R+ P+PP+P TP G
Sbjct: 627 PPLAPAPRPA------RTPGTL----QRQVRIPQMPAPPHPRTPLG 662
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 69 PALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAG 114
P L P P R PG+L R +R+ P+PP+P TP G
Sbjct: 627 PPLAPAPRPA------RTPGTL----QRQVRIPQMPAPPHPRTPLG 662
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 27.7 bits (60), Expect = 2.1
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 20/75 (26%)
Query: 59 PYCSPPMTFSPALPPLRSPCSELLLWRYPG---------SLIPEALRLLRLGDT------ 103
P PP +PA P +RSP + G S++ + R RL DT
Sbjct: 236 PAAPPPAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKPFRSRRLRDTAPGTTL 295
Query: 104 -----PSPPYPATPA 113
P PP PA PA
Sbjct: 296 QWGAAPCPPLPAFPA 310
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 63 PPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPA 113
P ++F P L L + C L++ S + + L LL L SPP P + A
Sbjct: 2626 PIISFLPHLRSLINVCVNLVMGVVGPSSVADGLPLLHLSPYLSPPLPFSTA 2676
>gi|169206277 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 59 PYCSPPMTFSPALPPLRSPCSEL--LLWRYPGSLIPEALRLLRLGDTPSPPYPATP 112
PY PP L RSP E + R+P PEA++L P PP PA+P
Sbjct: 88 PYLFPPCAMDTVLGG-RSPHLERPPTVCRHPVGRRPEAIQL------PGPPSPASP 136
>gi|169206560 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 59 PYCSPPMTFSPALPPLRSPCSEL--LLWRYPGSLIPEALRLLRLGDTPSPPYPATP 112
PY PP L RSP E + R+P PEA++L P PP PA+P
Sbjct: 88 PYLFPPCVMDTVLGG-RSPHLERPPTVCRHPVGRRPEAIQL------PGPPSPASP 136
>gi|239747276 PREDICTED: hypothetical protein XP_002346410 [Homo
sapiens]
Length = 169
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 62 SPPMTFSPALPPLRSPCS 79
+PP P LPPL SPC+
Sbjct: 122 APPAPLQPPLPPLLSPCT 139
>gi|169205714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 59 PYCSPPMTFSPALPPLRSPCSEL--LLWRYPGSLIPEALRLLRLGDTPSPPYPATP 112
PY PP L RSP E + R+P PEA++L P PP PA+P
Sbjct: 88 PYLFPPCVMDTVLGG-RSPHLERPPTVCRHPVGRRPEAIQL------PGPPSPASP 136
>gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]
Length = 4022
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 78 CSELLLWRYPGSLIPEALRLLRLGDTP-----SPPYPATPAGDIMEL 119
C ++LWRYP P L L+R+ P P GD++++
Sbjct: 2333 CPGMMLWRYPE---PRVLTLVRITPVPFNTTEDPDISTADLGDVLQV 2376
>gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]
Length = 3997
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 78 CSELLLWRYPGSLIPEALRLLRLGDTP-----SPPYPATPAGDIMEL 119
C ++LWRYP P L L+R+ P P GD++++
Sbjct: 2308 CPGMMLWRYPE---PRVLTLVRITPVPFNTTEDPDISTADLGDVLQV 2351
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 4 QQPLQRGPQGGAQRLPRAALGVTWGLDAREPLRKQFLSEENMATHFSQLSLHNDHPYCSP 63
++P + P + PR+ DA+ P R++ L + ++ +SL + P P
Sbjct: 44 REPARAEPPAPREPAPRS--------DAQPPSREKPLPQREVSRAEPPMSLQREPPRPEP 95
Query: 64 PMTFSPALPPLRSP 77
P F P PL+ P
Sbjct: 96 PPPFPPL--PLQPP 107
>gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo
sapiens]
Length = 125
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 66 TFSPALPPLRSPC-----------SELLLWRYPGSLIPEALRLLRL 100
T SPA PP R+P + +WR+PG + LRL L
Sbjct: 29 TISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGL 74
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 63 PPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPA 113
PP + +PP SP S +L R P S++P A G SP A PA
Sbjct: 121 PPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPA 171
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 63 PPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATP 112
PP + +PP SP S +L R P S++P R D+ PP P +P
Sbjct: 71 PPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPP----RSPDSVVPP-PGSP 115
>gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo
sapiens]
Length = 220
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 63 PPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPA 113
PP + +PP SP S +L R P S++P A G SP A PA
Sbjct: 116 PPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPA 166
>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
sapiens]
Length = 210
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 63 PPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPA 113
PP + +PP SP S +L R P S++P A G SP A PA
Sbjct: 106 PPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPA 156
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 59 PYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAG 114
PY +PP P P R P LL P +P L L R +PP P P G
Sbjct: 194 PYFAPP---GPHDPTSRGP-GRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPG 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,234,119
Number of Sequences: 37866
Number of extensions: 309180
Number of successful extensions: 1229
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 64
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.