Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM13C Sequence: fasta or formatted (502aa) NCBI GI: 219555642
Description:

hypothetical protein LOC220965 isoform 3

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [487aa] hypothetical protein LOC220965 isoform 2
alt prot [585aa] hypothetical protein LOC220965 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         31           2
 C cysteine            1.4          7           1
 D aspartate           6.2         31           1
 E glutamate           9.8         49           3
 F phenylalanine       2.4         12           2
 G glycine             4.2         21           1
 H histidine           2.8         14           1
 I isoleucine          3.6         18           2
 K lysine              8.8         44           2
 L leucine             8.4         42           2
 M methionine          1.4          7           2
 N asparagine          2.8         14           2
 P proline             9.0         45           2
 Q glutamine           6.8         34           2
 R arginine            6.4         32           2
 S serine              9.6         48           3
 T threonine           5.2         26           1
 V valine              3.6         18           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.6          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC220965 isoform 3 
FAM13C                1.000   hypothetical protein LOC220965 isoform 1 
FAM13C                0.455   hypothetical protein LOC220965 isoform 2 
FAM13A                0.266   family with sequence similarity 13, member A1 isofor...
FAM13A                0.266   family with sequence similarity 13, member A1 isofor...
FAM13B                0.221   hypothetical protein LOC51306 isoform 2 
FAM13B                0.220   hypothetical protein LOC51306 isoform 3 
FAM13B                0.206   hypothetical protein LOC51306 isoform 1 
PCLO                  0.020   piccolo isoform 2 
PCLO                  0.020   piccolo isoform 1 
KDM2B                 0.017   F-box and leucine-rich repeat protein 10 isoform b [...
CEP164                0.016   centrosomal protein 164kDa 
SRRM2                 0.015   splicing coactivator subunit SRm300 
AFF1                  0.014   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
DPCR1                 0.014   diffuse panbronchiolitis critical region 1 protein ...
EIF5B                 0.014   eukaryotic translation initiation factor 5B 
TTC28                 0.013   tetratricopeptide repeat domain 28 
C1orf113              0.013   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.013   SH3 domain-containing protein C1orf113 isoform 2 [H...
LOC100294236          0.013   PREDICTED: similar to diffuse panbronchiolitis crit...
IFT74                 0.013   coiled-coil domain containing 2 isoform b 
IFT74                 0.013   coiled-coil domain containing 2 isoform a 
IFT74                 0.013   coiled-coil domain containing 2 isoform a 
IFT74                 0.013   coiled-coil domain containing 2 isoform a 
DSP                   0.012   desmoplakin isoform II 
LOC147646             0.012   PREDICTED: hypothetical protein 
LOC147646             0.012   PREDICTED: hypothetical protein 
LOC147646             0.012   PREDICTED: hypothetical protein 
FSCB                  0.012   fibrous sheath CABYR binding protein 
CUX2                  0.012   cut-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press