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Search of human proteins with 50845403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens] 314 1e-86
gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens] 48 3e-06
gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens] 33 0.066
gi|239757739 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|239752232 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 29 1.6
gi|70608185 hypothetical protein LOC285382 [Homo sapiens] 29 1.6
gi|46592978 ATP-binding cassette sub-family G member 1 isoform 7... 28 2.1
gi|46592971 ATP-binding cassette sub-family G member 1 isoform 6... 28 2.1
gi|46592964 ATP-binding cassette sub-family G member 1 isoform 5... 28 2.1
gi|46592956 ATP-binding cassette sub-family G member 1 isoform 3... 28 2.1
gi|46592915 ATP-binding cassette sub-family G member 1 isoform 4... 28 2.1
gi|46592898 ATP-binding cassette sub-family G member 1 isoform 2... 28 2.1
gi|83367077 mucin 16 [Homo sapiens] 28 2.1
gi|4502431 bone morphogenetic protein receptor, type IB precurso... 28 2.8
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo... 28 2.8
gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo... 28 2.8
gi|5174487 spermatogenesis associated 2 [Homo sapiens] 28 3.6
gi|209413749 spermatogenesis associated 2 [Homo sapiens] 28 3.6
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 28 3.6
gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo... 28 3.6
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 28 3.6
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo... 28 3.6
gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo... 28 3.6
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 27 4.7
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 27 4.7
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 27 4.7
gi|56237021 fibrillin 3 precursor [Homo sapiens] 27 8.0
>gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens]
Length = 147
Score = 314 bits (805), Expect = 1e-86
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCY 60
MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCY
Sbjct: 1 MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCY 60
Query: 61 RCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSP 120
RCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSP
Sbjct: 61 RCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSP 120
Query: 121 VSGFWIFSQYCFLDFCNDPQNRGLYTP 147
VSGFWIFSQYCFLDFCNDPQNRGLYTP
Sbjct: 121 VSGFWIFSQYCFLDFCNDPQNRGLYTP 147
>gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens]
Length = 201
Score = 48.1 bits (113), Expect = 3e-06
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 25 VLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCYRCLLETKELGCLLGSDICLTPAGS 84
+L+ VLVM+ GK +P P C+ CL+E +GC+ GS+ C + S
Sbjct: 5 MLVGVLVMVGFTVGK-----------VPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSS 53
Query: 85 SCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSPVSGFWIFSQYCFLDFCN 137
C+ + +V C + C R + + +W +Q C D+CN
Sbjct: 54 LCMVITIYYDVKVRFIVRGC-GQYISYRCQEKRNTYFAEYWYQAQCCQYDYCN 105
>gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
Length = 207
Score = 33.5 bits (75), Expect = 0.066
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 25 VLLIVLVMMSLVFGKFVPV-NWEPP-QPLPFPKYLRCYRCLLETKELGCLLGSDICLTPA 82
V+ IV+ S F K + N PP P PFP +C+ C C ++ P
Sbjct: 50 VVQIVIFSESWAFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQ 109
Query: 83 GSS-CITLHKKNSSGSDVMVSD---CRSKEQMSDCSNTRTS 119
+ C+T+H S G ++ RS+ C ++R S
Sbjct: 110 NTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCHHSRDS 150
>gi|239757739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 30.0 bits (66), Expect = 0.72
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 5 AGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPK 55
A S S+ P F ++ + +T L L+ S +F V W P+P PFP+
Sbjct: 65 AESPSVYPRVFQTAARTTFTFL--ALLPCSAIFEVSTTVPWPRPRPGPFPR 113
>gi|239752232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 30.0 bits (66), Expect = 0.72
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 5 AGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPK 55
A S S+ P F ++ + +T L L+ S +F V W P+P PFP+
Sbjct: 65 AESPSVYPRVFQTAARTTFTFL--ALLPCSAIFEVSTTVPWPRPRPGPFPR 113
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITL--HKKNSSGSDVMVSDCRSKEQMSDCS 114
L+C C L T+ C G +C G +C+ L +++N+ MV ++ D
Sbjct: 21 LQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMTFDLR 80
Query: 115 N 115
N
Sbjct: 81 N 81
>gi|70608185 hypothetical protein LOC285382 [Homo sapiens]
Length = 250
Score = 28.9 bits (63), Expect = 1.6
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 29 VLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCYRCLLETKELGCLLGSDICLT---PAGSS 85
+ V ++ F KF V ++PP P P+Y ++ ++ C+ G +C PA S
Sbjct: 97 ISVSLTEHFLKFASV-FQPPLPPDSPRYCMISDLFIDNYQVKCINGK-MCYVQKQPAPHS 154
Query: 86 CITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSPVSGFWIFSQYCFLDFCNDPQNRG 143
+ + S D ++S + ++ CS+ +S SG + +++ C++ G
Sbjct: 155 -HRMSPEEVSAHDALISKESNTPKIDHCSSPSSSEDSGINAIGAH-YVESCDEDTEEG 210
>gi|46592978 ATP-binding cassette sub-family G member 1 isoform 7
[Homo sapiens]
Length = 663
Score = 28.5 bits (62), Expect = 2.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 54 PKYLRCYRCLLETKELGCLLGSDICLTP----AGSSCITLHKK---NSSGSDVMVSDCRS 106
P+ LRC+R ++ C + D L P + ++ H K G MV + +
Sbjct: 146 PRDLRCFR------KVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILT 199
Query: 107 KEQMSDCSNTRTSPVSG 123
+ C+NTRT +SG
Sbjct: 200 ALGLLSCANTRTGSLSG 216
>gi|46592971 ATP-binding cassette sub-family G member 1 isoform 6
[Homo sapiens]
Length = 644
Score = 28.5 bits (62), Expect = 2.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 54 PKYLRCYRCLLETKELGCLLGSDICLTP----AGSSCITLHKK---NSSGSDVMVSDCRS 106
P+ LRC+R ++ C + D L P + ++ H K G MV + +
Sbjct: 127 PRDLRCFR------KVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILT 180
Query: 107 KEQMSDCSNTRTSPVSG 123
+ C+NTRT +SG
Sbjct: 181 ALGLLSCANTRTGSLSG 197
>gi|46592964 ATP-binding cassette sub-family G member 1 isoform 5
[Homo sapiens]
Length = 668
Score = 28.5 bits (62), Expect = 2.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 54 PKYLRCYRCLLETKELGCLLGSDICLTP----AGSSCITLHKK---NSSGSDVMVSDCRS 106
P+ LRC+R ++ C + D L P + ++ H K G MV + +
Sbjct: 151 PRDLRCFR------KVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILT 204
Query: 107 KEQMSDCSNTRTSPVSG 123
+ C+NTRT +SG
Sbjct: 205 ALGLLSCANTRTGSLSG 221
>gi|46592956 ATP-binding cassette sub-family G member 1 isoform 3
[Homo sapiens]
Length = 677
Score = 28.5 bits (62), Expect = 2.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 54 PKYLRCYRCLLETKELGCLLGSDICLTP----AGSSCITLHKK---NSSGSDVMVSDCRS 106
P+ LRC+R ++ C + D L P + ++ H K G MV + +
Sbjct: 160 PRDLRCFR------KVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILT 213
Query: 107 KEQMSDCSNTRTSPVSG 123
+ C+NTRT +SG
Sbjct: 214 ALGLLSCANTRTGSLSG 230
>gi|46592915 ATP-binding cassette sub-family G member 1 isoform 4
[Homo sapiens]
Length = 678
Score = 28.5 bits (62), Expect = 2.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 54 PKYLRCYRCLLETKELGCLLGSDICLTP----AGSSCITLHKK---NSSGSDVMVSDCRS 106
P+ LRC+R ++ C + D L P + ++ H K G MV + +
Sbjct: 149 PRDLRCFR------KVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILT 202
Query: 107 KEQMSDCSNTRTSPVSG 123
+ C+NTRT +SG
Sbjct: 203 ALGLLSCANTRTGSLSG 219
>gi|46592898 ATP-binding cassette sub-family G member 1 isoform 2
[Homo sapiens]
Length = 666
Score = 28.5 bits (62), Expect = 2.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 54 PKYLRCYRCLLETKELGCLLGSDICLTP----AGSSCITLHKK---NSSGSDVMVSDCRS 106
P+ LRC+R ++ C + D L P + ++ H K G MV + +
Sbjct: 149 PRDLRCFR------KVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILT 202
Query: 107 KEQMSDCSNTRTSPVSG 123
+ C+NTRT +SG
Sbjct: 203 ALGLLSCANTRTGSLSG 219
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.5 bits (62), Expect = 2.1
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 1 MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKF--VPVNWEPPQ-PLPFPKYL 57
M P+ S P SSP + +L VLV + V G PV PP P + L
Sbjct: 5639 MTSPSPVSSTSPESIPSSPLPVTALLTSVLVTTTNVLGTTSPEPVTSSPPNLSSPTQERL 5698
Query: 58 RCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSS 95
Y+ T+ + + ++ + G+S I+ H+ SS
Sbjct: 5699 TTYKDTAHTEAMHASMHTNTAVANVGTS-ISGHESQSS 5735
>gi|4502431 bone morphogenetic protein receptor, type IB precursor
[Homo sapiens]
Length = 502
Score = 28.1 bits (61), Expect = 2.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 46 EPPQPLPFPKYLRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCR 105
E P P PK LRC +C E ++IC T C T+ +++ SG V+ S C
Sbjct: 19 ESTAPTPRPKVLRC-KCHHHCPEDSV---NNICST--DGYCFTMIEEDDSGLPVVTSGCL 72
Query: 106 SKE 108
E
Sbjct: 73 GLE 75
>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
sapiens]
Length = 176
Score = 28.1 bits (61), Expect = 2.8
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 52 PFPKYLRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
P L CY C + CL G C+T C+ MV C +
Sbjct: 94 PSGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 148
>gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo
sapiens]
Length = 246
Score = 28.1 bits (61), Expect = 2.8
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 52 PFPKYLRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
P L CY C + CL G C+T C+ MV C +
Sbjct: 164 PSGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 218
>gi|5174487 spermatogenesis associated 2 [Homo sapiens]
Length = 520
Score = 27.7 bits (60), Expect = 3.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 53 FPKYLRCYRCLLETKELGCLLGSDICLTPAGSSCITLHK 91
F KY++ + ++T GSD CL A S+ ++LHK
Sbjct: 16 FRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHK 54
>gi|209413749 spermatogenesis associated 2 [Homo sapiens]
Length = 520
Score = 27.7 bits (60), Expect = 3.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 53 FPKYLRCYRCLLETKELGCLLGSDICLTPAGSSCITLHK 91
F KY++ + ++T GSD CL A S+ ++LHK
Sbjct: 16 FRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHK 54
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
L CY C + CL G C+T C+ MV C +
Sbjct: 133 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 182
>gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo
sapiens]
Length = 265
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
L CY C + CL G C+T C+ MV C +
Sbjct: 188 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 237
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
L CY C + CL G C+T C+ MV C +
Sbjct: 93 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 142
>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
sapiens]
Length = 195
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
L CY C + CL G C+T C+ MV C +
Sbjct: 118 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 167
>gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo
sapiens]
Length = 121
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRS 106
L CY C + CL G C+T C+ MV C +
Sbjct: 44 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCEN 93
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 27.3 bits (59), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 3 GP-AGSQSLGPLCFHSSPQALYTVLLIVLVMM---SLVFGKFVPVNWEPPQP 50
GP +G + LCFH P L +LL+ L+++ L+ G + EP P
Sbjct: 11 GPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSP 62
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 27.3 bits (59), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 3 GP-AGSQSLGPLCFHSSPQALYTVLLIVLVMM---SLVFGKFVPVNWEPPQP 50
GP +G + LCFH P L +LL+ L+++ L+ G + EP P
Sbjct: 11 GPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSP 62
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 27.3 bits (59), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 3 GP-AGSQSLGPLCFHSSPQALYTVLLIVLVMM---SLVFGKFVPVNWEPPQP 50
GP +G + LCFH P L +LL+ L+++ L+ G + EP P
Sbjct: 11 GPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSP 62
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 26.6 bits (57), Expect = 8.0
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 62 CLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSPV 121
CL CL LT G +C+ ++ S + C++ E + R
Sbjct: 1903 CLNTAGSFHCLCQDGFELTADGKNCVDTNECLSLAGTCLPGTCQNLE-----GSFRCICP 1957
Query: 122 SGFWIFSQYCF-LDFCNDPQNRGLY 145
GF + S +C +D C++ N L+
Sbjct: 1958 PGFQVQSDHCIDIDECSEEPNLCLF 1982
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,013,556
Number of Sequences: 37866
Number of extensions: 336670
Number of successful extensions: 806
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 29
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.