Guide to the Human Genome
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Name: SPATA2 Sequence: fasta or formatted (520aa) NCBI GI: 209413749
Description:

spermatogenesis associated 2

Referenced in:

Testes and Sperm

Other entries for this name:
alt mRNA [520aa] spermatogenesis associated 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         34           2
 C cysteine            3.3         17           1
 D aspartate           6.0         31           2
 E glutamate           5.4         28           2
 F phenylalanine       3.1         16           1
 G glycine             3.8         20           1
 H histidine           2.9         15           1
 I isoleucine          1.7          9           2
 K lysine              7.1         37           2
 L leucine            10.8         56           2
 M methionine          1.7          9           1
 N asparagine          1.5          8           2
 P proline             6.5         34           2
 Q glutamine           3.1         16           1
 R arginine            7.1         37           3
 S serine             13.5         70           4
 T threonine           5.8         30           3
 V valine              5.0         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            4.6         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 2 
SPATA2                1.000   spermatogenesis associated 2 
SPATA2L               0.044   spermatogenesis associated 2-like 
LOC100128719          0.015   PREDICTED: hypothetical protein, partial 
LOC100128719          0.015   PREDICTED: hypothetical protein, partial 
SORBS2                0.012   sorbin and SH3 domain containing 2 isoform 5 
TRIM42                0.011   tripartite motif-containing 42 
TXLNB                 0.009   taxilin beta 
LOC100134147          0.009   PREDICTED: hypothetical protein 
SORBS2                0.009   sorbin and SH3 domain containing 2 isoform 1 
C1orf106              0.009   hypothetical protein LOC55765 isoform 2 
C1orf106              0.009   hypothetical protein LOC55765 isoform 1 
MLL5                  0.009   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.009   myeloid/lymphoid or mixed-lineage leukemia 5 
RNF169                0.009   ring finger protein 169 
ZNF238                0.007   zinc finger protein 238 isoform 2 
RBMY1A1               0.007   RNA binding motif protein, Y-linked, family 1, member...
RBMY1B                0.007   RNA binding motif protein, Y-linked, family 1, membe...
ZNF238                0.007   zinc finger protein 238 isoform 1 
RBMY1F                0.007   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.007   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.007   RNA binding motif protein, Y-linked, family 1, membe...
MUC12                 0.007   PREDICTED: mucin 12 
MUC12                 0.007   PREDICTED: mucin 12 
MUC12                 0.007   PREDICTED: mucin 12, cell surface associated 
RBMY1E                0.007   RNA binding motif protein, Y-linked, family 1, membe...
RNF31                 0.007   ring finger protein 31 
HRC                   0.007   histidine rich calcium binding protein precursor [Hom...
MLL3                  0.006   myeloid/lymphoid or mixed-lineage leukemia 3 
SORBS2                0.006   sorbin and SH3 domain containing 2 isoform 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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