Guide to the Human Genome
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Name: ABCG1 Sequence: fasta or formatted (677aa) NCBI GI: 46592956
Description:

ATP-binding cassette sub-family G member 1 isoform 3

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [666aa] ATP-binding cassette sub-family G member 1 isoform 2
alt prot [678aa] ATP-binding cassette sub-family G member 1 isoform 4
alt prot [668aa] ATP-binding cassette sub-family G member 1 isoform 5
alt prot [644aa] ATP-binding cassette sub-family G member 1 isoform 6
alt prot [663aa] ATP-binding cassette sub-family G member 1 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         45           2
 C cysteine            2.4         16           1
 D aspartate           4.6         31           2
 E glutamate           5.3         36           2
 F phenylalanine       5.5         37           2
 G glycine             7.2         49           2
 H histidine           1.9         13           1
 I isoleucine          5.0         34           2
 K lysine              4.0         27           2
 L leucine            12.7         86           2
 M methionine          3.8         26           2
 N asparagine          3.1         21           2
 P proline             3.8         26           2
 Q glutamine           2.8         19           1
 R arginine            5.5         37           2
 S serine              9.2         62           3
 T threonine           4.7         32           1
 V valine              7.2         49           2
 W tryptophan          0.9          6           2
 Y tyrosine            3.7         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette sub-family G member 1 isoform 3... 
ABCG1                 0.966   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.966   ATP-binding cassette sub-family G member 1 isoform 2...
ABCG1                 0.964   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.959   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.953   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG4                 0.678   ATP-binding cassette, subfamily G, member 4 
ABCG4                 0.678   ATP-binding cassette, subfamily G, member 4 
ABCG2                 0.178   ATP-binding cassette, sub-family G, member 2 
ABCG8                 0.152   ATP-binding cassette sub-family G member 8 
ABCG5                 0.139   ATP-binding cassette sub-family G member 5 
ABCA12                0.050   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.050   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA4                 0.049   ATP-binding cassette, sub-family A member 4 
ABCA10                0.048   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCA13                0.047   ATP binding cassette, sub-family A (ABC1), member 13...
ABCA1                 0.046   ATP-binding cassette, sub-family A member 1 
ABCA3                 0.043   ATP-binding cassette, sub-family A member 3 
ABCA6                 0.043   ATP-binding cassette, sub-family A, member 6 
ABCA5                 0.043   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.043   ATP-binding cassette, sub-family A , member 5 
ABCB4                 0.042   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.042   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.042   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCA2                 0.042   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.042   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA7                 0.042   ATP-binding cassette, sub-family A, member 7 
ABCB9                 0.042   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.042   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.042   ATP-binding cassette, sub-family B (MDR/TAP), member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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