Guide to the Human Genome
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Name: SCGB3A1 Sequence: fasta or formatted (104aa) NCBI GI: 50363226
Description:

secretoglobin, family 3A, member 1

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.2         21           3
 C cysteine            2.9          3           1
 D aspartate           0.0          0           0
 E glutamate           3.8          4           1
 F phenylalanine       1.9          2           1
 G glycine            10.6         11           1
 H histidine           1.0          1           1
 I isoleucine          1.9          2           1
 K lysine              5.8          6           1
 L leucine            20.2         21           3
 M methionine          1.0          1           1
 N asparagine          2.9          3           1
 P proline             5.8          6           1
 Q glutamine           2.9          3           1
 R arginine            0.0          0           0
 S serine              7.7          8           2
 T threonine           2.9          3           1
 V valine              8.7          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secretoglobin, family 3A, member 1 
SCGB3A2               0.227   secretoglobin, family 3A, member 2 
MESDC1                0.029   mesoderm development candidate 1 
BRIP1                 0.023   BRCA1 interacting protein C-terminal helicase 1 [Hom...
NAGK                  0.017   N-Acetylglucosamine kinase 
FOXB2                 0.017   forkhead box B2 
APC2                  0.012   adenomatosis polyposis coli 2 
ANKK1                 0.012   ankyrin repeat and kinase domain containing 1 
USP40                 0.012   ubiquitin thioesterase 40 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
ARMC5                 0.012   armadillo repeat containing 5 isoform a 
MFSD9                 0.006   major facilitator superfamily domain containing 9 [...
LYL1                  0.006   lymphoblastic leukemia derived sequence 1 
GPRIN3                0.006   G protein-regulated inducer of neurite outgrowth 3 ...
SLC1A5                0.006   solute carrier family 1 member 5 isoform 3 
SLC1A5                0.006   solute carrier family 1 member 5 isoform 2 
SLC1A5                0.006   solute carrier family 1 member 5 isoform 1 
FOXD1                 0.006   forkhead box D1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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