Search of human proteins with 5032005

Search of human proteins with 5032005

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5032005 protein tyrosine phosphatase, receptor type,
C-associated protein [Homo sapiens]
         (206 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5032005 protein tyrosine phosphatase, receptor type, C-associ...   412   e-116
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       34   0.077
gi|239757890 PREDICTED: similar to family with sequence similari...    33   0.13 
gi|157388933 hypothetical protein LOC55026 isoform 2 [Homo sapiens]    33   0.13 
gi|157388935 hypothetical protein LOC55026 isoform 3 [Homo sapiens]    33   0.13 
gi|157388931 hypothetical protein LOC55026 isoform 1 [Homo sapiens]    33   0.13 
gi|30795231 brain abundant, membrane attached signal protein 1 [...    33   0.22 
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ...    33   0.22 
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]        33   0.22 
gi|11560141 T-cell leukemia translocation altered [Homo sapiens]       33   0.22 
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti...    32   0.29 
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             32   0.29 
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             32   0.29 
gi|55956788 nucleolin [Homo sapiens]                                   32   0.38 
gi|171906569 seipin isoform 1 [Homo sapiens]                           32   0.38 
gi|195230753 seipin isoform 1 [Homo sapiens]                           32   0.38 
gi|40068505 seipin isoform 2 [Homo sapiens]                            32   0.38 
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ...    32   0.38 
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s...    32   0.38 
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa...    32   0.38 
gi|148664197 coiled-coil domain containing 40 [Homo sapiens]           32   0.38 
gi|171906567 peripheral benzodiazepine receptor-associated prote...    32   0.38 
gi|171906559 peripheral benzodiazepine receptor-associated prote...    32   0.38 
gi|55741677 SET domain containing 1A [Homo sapiens]                    32   0.50 
gi|115529449 upstream binding transcription factor, RNA polymera...    32   0.50 
gi|115529451 upstream binding transcription factor, RNA polymera...    32   0.50 
gi|7657671 upstream binding transcription factor, RNA polymerase...    32   0.50 
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ...    31   0.65 
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ...    31   0.65 
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa...    31   0.85 

>gi|5032005 protein tyrosine phosphatase, receptor type,
           C-associated protein [Homo sapiens]
          Length = 206

 Score =  412 bits (1060), Expect = e-116
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD 60
           MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD
Sbjct: 1   MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRD 60

Query: 61  SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD 120
           SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD
Sbjct: 61  SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVAD 120

Query: 121 GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL 180
           GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL
Sbjct: 121 GGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDL 180

Query: 181 HAFAGSAAWDDSARAAGGQGLHVTAL 206
           HAFAGSAAWDDSARAAGGQGLHVTAL
Sbjct: 181 HAFAGSAAWDDSARAAGGQGLHVTAL 206


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 96   ELGSTDNDLER----QEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEA- 150
            E G T+ D       QE E+    D  A+G  + D G  +Q    A  PE+     +++ 
Sbjct: 4924 ERGETETDQNESQSPQEPEEGPSEDDKAEGEEEMDTGADDQDGDAAQHPEEHSEEQQQSV 4983

Query: 151  RDSDTEGDLVLGSPGPASAG 170
             + D E D   G  GPA  G
Sbjct: 4984 EEKDKEADEEGGENGPADQG 5003


>gi|239757890 PREDICTED: similar to family with sequence
          similarity 70, member A [Homo sapiens]
          Length = 377

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 13 LALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARLG 71
          ++LP ++G+    + +  S  VTV LL++ +L+L  GLA   R  +   GGYY    LG
Sbjct: 13 MSLPDSMGAFNRRKRN--SIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVILG 69


>gi|157388933 hypothetical protein LOC55026 isoform 2 [Homo
          sapiens]
          Length = 325

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 13 LALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARLG 71
          ++LP ++G+    + +  S  VTV LL++ +L+L  GLA   R  +   GGYY    LG
Sbjct: 13 MSLPDSMGAFNRRKRN--SIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVILG 69


>gi|157388935 hypothetical protein LOC55026 isoform 3 [Homo
          sapiens]
          Length = 241

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 13 LALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARLG 71
          ++LP ++G+    + +  S  VTV LL++ +L+L  GLA   R  +   GGYY    LG
Sbjct: 13 MSLPDSMGAFNRRKRN--SIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVILG 69


>gi|157388931 hypothetical protein LOC55026 isoform 1 [Homo
          sapiens]
          Length = 349

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 13 LALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARLG 71
          ++LP ++G+    + +  S  VTV LL++ +L+L  GLA   R  +   GGYY    LG
Sbjct: 13 MSLPDSMGAFNRRKRN--SIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVILG 69


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 105 ERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEG----DLV 160
           E +E ++  D D  A+G  +   GE +    +  +P+  P + E A ++  E     +  
Sbjct: 50  EAKEGKEKPDQD--AEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQE 107

Query: 161 LGSPGPASAGGSAEALLSDLHAFAGSAAWDDSARAAG 197
             +PGPA+ G + +A      A A +A  + +A AAG
Sbjct: 108 QAAPGPAAGGEAPKA------AEAAAAPAESAAPAAG 138


>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
           [Homo sapiens]
          Length = 593

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 22/144 (15%)

Query: 61  SGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVA- 119
           + G  HPA  G +  G         PPG   +  A  G+  +    +E   +  ++ +A 
Sbjct: 69  AAGLGHPASPGGSEDG---------PPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMAS 119

Query: 120 --DGGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSA--EA 175
             D   + +  E E+  GE    E+     EE  + D EG   LG PGPAS G +A    
Sbjct: 120 DEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEE-EEEDEEG---LGPPGPASLGTTALFPR 175

Query: 176 LLSDLHAFAGSAAWDDSARAAGGQ 199
                 AF G    D   R  GGQ
Sbjct: 176 KAQPPQAFRG----DGVPRVLGGQ 195


>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
          Length = 1302

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 137 ASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDLHAFAGSAAWD 190
           ASSP+ VP  +   R S T   L   SP   S   S+  +   L A  G++ WD
Sbjct: 357 ASSPQAVPASSSRQRPSSTGPPLPPASPSATSRRPSSLRISPSLGASGGASNWD 410


>gi|11560141 T-cell leukemia translocation altered [Homo sapiens]
          Length = 103

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 12 LLALP----GALGSGGSAEDSVGSSSVTVVLLLLLLLLLAT-GLALAWRRLSRDSGGYYH 66
          L ALP    GALGS    E       VT+  LLLL L+L+  G+ LAW        G YH
Sbjct: 10 LQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYH 69

Query: 67 PARLG 71
             LG
Sbjct: 70 RPGLG 74


>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
           [Homo sapiens]
          Length = 327

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 17/69 (24%)

Query: 144 PVRAEEARDSDTEG---DLVLGSPGPASAGGSAEALLSDLHAFAGS-------------A 187
           P +++E RD   +G      +G PGPA AG + +++L+  HA  GS             A
Sbjct: 168 PGKSQEDRDWQRDGLPSPCAVGQPGPAQAGPNGQSVLAP-HASQGSQWSAWGRGPQVVGA 226

Query: 188 AWDDSARAA 196
           AW+  A AA
Sbjct: 227 AWEPQAGAA 235


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 87  PGRWLQARAELGSTDNDLERQEDEQDTDYDHVA-----------DGGLQADPGEGEQQCG 135
           PG   + RAE    + + E +E+E++ + + VA            GG     G GE +  
Sbjct: 25  PGSAARGRAE--PPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGGGEAETM 82

Query: 136 EASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDLHAFAGSAAWDDSARA 195
              SPE      E+  + + E D        +S GG  E+    L   +G ++ D++   
Sbjct: 83  SEPSPESASQAGED--EDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSL 140

Query: 196 AGG 198
           + G
Sbjct: 141 SPG 143


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 87  PGRWLQARAELGSTDNDLERQEDEQDTDYDHVA-----------DGGLQADPGEGEQQCG 135
           PG   + RAE    + + E +E+E++ + + VA            GG     G GE +  
Sbjct: 25  PGSAARGRAE--PPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGGGEAETM 82

Query: 136 EASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDLHAFAGSAAWDDSARA 195
              SPE      E+  + + E D        +S GG  E+    L   +G ++ D++   
Sbjct: 83  SEPSPESASQAGED--EDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSL 140

Query: 196 AGG 198
           + G
Sbjct: 141 SPG 143


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 87  PGRWLQARAELGSTDNDLERQEDEQDTDYDHVADG---GLQADPGEGEQQCGEASSPEQV 143
           P     A A   S D D E  ED++D D D   D     ++  P +G++      + + V
Sbjct: 172 PAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKK------AAKVV 225

Query: 144 PVRAEE-ARDSDTEGD 158
           PV+A+  A D D E D
Sbjct: 226 PVKAKNVAEDEDEEED 241


>gi|171906569 seipin isoform 1 [Homo sapiens]
          Length = 462

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 108 EDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARD---SDTEG---DLVL 161
           ++E     D   DG    DP   E Q  E   P+Q P+  EE  +   SD  G   D  L
Sbjct: 362 QEESTPQSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAAL 421

Query: 162 ----GSPGPASAGGSAEAL 176
                 P PA A  SA  L
Sbjct: 422 LTEANLPAPAPASASAPVL 440


>gi|195230753 seipin isoform 1 [Homo sapiens]
          Length = 462

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 108 EDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARD---SDTEG---DLVL 161
           ++E     D   DG    DP   E Q  E   P+Q P+  EE  +   SD  G   D  L
Sbjct: 362 QEESTPQSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAAL 421

Query: 162 ----GSPGPASAGGSAEAL 176
                 P PA A  SA  L
Sbjct: 422 LTEANLPAPAPASASAPVL 440


>gi|40068505 seipin isoform 2 [Homo sapiens]
          Length = 398

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 108 EDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARD---SDTEG---DLVL 161
           ++E     D   DG    DP   E Q  E   P+Q P+  EE  +   SD  G   D  L
Sbjct: 298 QEESTPQSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAAL 357

Query: 162 ----GSPGPASAGGSAEAL 176
                 P PA A  SA  L
Sbjct: 358 LTEANLPAPAPASASAPVL 376


>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
           sapiens]
          Length = 1188

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 85  SPPGRWLQARAELGSTDNDLERQEDEQ-----DTDYDHVADGGLQADPGEGEQQCGEASS 139
           SP GR   AR ++ S   ++E ++ E      DT+   V D    A+  E E   G  ++
Sbjct: 466 SPRGRRRIAR-DVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNT 524

Query: 140 PEQVPVRAEEARDSDTEGD 158
           P+Q   + ++  DSD + D
Sbjct: 525 PKQKEKKIKKQEDSDKDSD 543


>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
           sapiens]
          Length = 1203

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 85  SPPGRWLQARAELGSTDNDLERQEDEQ-----DTDYDHVADGGLQADPGEGEQQCGEASS 139
           SP GR   AR ++ S   ++E ++ E      DT+   V D    A+  E E   G  ++
Sbjct: 466 SPRGRRRIAR-DVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNT 524

Query: 140 PEQVPVRAEEARDSDTEGD 158
           P+Q   + ++  DSD + D
Sbjct: 525 PKQKEKKIKKQEDSDKDSD 543


>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
           sapiens]
          Length = 1257

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 85  SPPGRWLQARAELGSTDNDLERQEDEQ-----DTDYDHVADGGLQADPGEGEQQCGEASS 139
           SP GR   AR ++ S   ++E ++ E      DT+   V D    A+  E E   G  ++
Sbjct: 466 SPRGRRRIAR-DVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNT 524

Query: 140 PEQVPVRAEEARDSDTEGD 158
           P+Q   + ++  DSD + D
Sbjct: 525 PKQKEKKIKKQEDSDKDSD 543


>gi|148664197 coiled-coil domain containing 40 [Homo sapiens]
          Length = 1142

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 84  ASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQV 143
           A P G   ++  E GS       + +++  +  H+     + D  +GE+  G    PE+V
Sbjct: 2   AEPGGAAGRSHPEDGSAS-----EGEKEGNNESHMVSPPEKDDGQKGEEAVGSTEHPEEV 56

Query: 144 PVRAE---EARDSDTEGDLVLGSPGPASAGGSAEA 175
             +AE   E  + +TEG+  +     A + G AE+
Sbjct: 57  TTQAEAAIEEGEVETEGEAAVEGEEEAVSYGDAES 91


>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
            isoform b [Homo sapiens]
          Length = 1797

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 105  ERQEDEQDTDYDHVADGGLQADPGEGEQ-------QCGEASSPEQVPVRAEEARDSDTEG 157
            E +E+E+D + +    G    DPG  E          G+   P Q P+  E +R  D   
Sbjct: 1275 EEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQCPLSPESSRAGDCLE 1334

Query: 158  DL--VLGSPGPASAGGSAE 174
            D+  ++G       GGS E
Sbjct: 1335 DMPGLVGGSSRRRGGGSPE 1353


>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
            isoform a [Homo sapiens]
          Length = 1857

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 105  ERQEDEQDTDYDHVADGGLQADPGEGEQ-------QCGEASSPEQVPVRAEEARDSDTEG 157
            E +E+E+D + +    G    DPG  E          G+   P Q P+  E +R  D   
Sbjct: 1335 EEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQCPLSPESSRAGDCLE 1394

Query: 158  DL--VLGSPGPASAGGSAE 174
            D+  ++G       GGS E
Sbjct: 1395 DMPGLVGGSSRRRGGGSPE 1413


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 92   QARAELGSTDNDLERQEDEQDTDYDHVAD-GGLQADPGEGEQQCGEASSPEQVPVRAEEA 150
            +A  E  S  ++ + +EDE+D D +   D    + +  +GE +  E+ S  +  + A+  
Sbjct: 967  EASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDE--ESDSSSKCSLYADSD 1024

Query: 151  RDSDTEGDLVLGSPGPASAGGSAEALLSDLHAFAGSAAWDD 191
             ++D+  D    S   +S+  S+ +  S   + + S++ D+
Sbjct: 1025 GENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDE 1065


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 101 DNDLERQEDEQDTDYDHVADGGLQAD-PGEGEQQCGEASSPEQVPVRAEEARDSDTEGDL 159
           D++ E +E+E D + D   DGG  ++   E E + G+ +  +      +E  D D + + 
Sbjct: 649 DDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNES 708

Query: 160 VLGSPGPASAGGSAEA 175
              S   +S+G S+++
Sbjct: 709 EGSSSSSSSSGDSSDS 724



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 100 TDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGD 158
           ++++ + +EDE D D D   +     D  E      E+SS ++     E   D + E D
Sbjct: 638 SESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDD 696


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 101 DNDLERQEDEQDTDYDHVADGGLQAD-PGEGEQQCGEASSPEQVPVRAEEARDSDTEGDL 159
           D++ E +E+E D + D   DGG  ++   E E + G+ +  +      +E  D D + + 
Sbjct: 649 DDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNES 708

Query: 160 VLGSPGPASAGGSAEA 175
              S   +S+G S+++
Sbjct: 709 EGSSSSSSSSGDSSDS 724



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 100 TDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGD 158
           ++++ + +EDE D D D   +     D  E      E+SS ++     E   D + E D
Sbjct: 638 SESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDD 696


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 101 DNDLERQEDEQDTDYDHVADGGLQAD-PGEGEQQCGEASSPEQVPVRAEEARDSDTEGDL 159
           D++ E +E+E D + D   DGG  ++   E E + G+ +  +      +E  D D + + 
Sbjct: 686 DDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNES 745

Query: 160 VLGSPGPASAGGSAEA 175
              S   +S+G S+++
Sbjct: 746 EGSSSSSSSSGDSSDS 761



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 100 TDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGD 158
           ++++ + +EDE D D D   +     D  E      E+SS ++     E   D + E D
Sbjct: 675 SESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDD 733


>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
           [Homo sapiens]
          Length = 806

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 84  ASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQV 143
           A   G  L+  A  G  + + E +E+E+           L  D  E  ++ G A + +  
Sbjct: 67  AGRSGAGLEQEAAAGGDEEEEEEEEEEEGIS-------ALDGDQMELGEENGAAGAADSG 119

Query: 144 PVRAEEARDSDTEGD 158
           P+  EEA   D  GD
Sbjct: 120 PMEEEEAASEDENGD 134


>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
           [Homo sapiens]
          Length = 825

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 84  ASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQV 143
           A   G  L+  A  G  + + E +E+E+           L  D  E  ++ G A + +  
Sbjct: 67  AGRSGAGLEQEAAAGGDEEEEEEEEEEEGIS-------ALDGDQMELGEENGAAGAADSG 119

Query: 144 PVRAEEARDSDTEGD 158
           P+  EEA   D  GD
Sbjct: 120 PMEEEEAASEDENGD 134


>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
           sapiens]
          Length = 756

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 129 EGEQQCGEASSPEQVPVRAEEARDSD-TEGDLVLGSPGPASAGG 171
           E  ++CG AS PE  P R + +  S    G++ + SP PA   G
Sbjct: 127 EEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAG 170


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,299,874
Number of Sequences: 37866
Number of extensions: 457944
Number of successful extensions: 1988
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 178
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.