Guide to the Human Genome
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Name: TCTA Sequence: fasta or formatted (103aa) NCBI GI: 11560141
Description:

T-cell leukemia translocation altered

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7          9           2
 C cysteine            0.0          0           0
 D aspartate           1.9          2           1
 E glutamate           6.8          7           1
 F phenylalanine       3.9          4           1
 G glycine            11.7         12           2
 H histidine           2.9          3           1
 I isoleucine          1.0          1           1
 K lysine              1.9          2           1
 L leucine            17.5         18           4
 M methionine          2.9          3           1
 N asparagine          2.9          3           1
 P proline             4.9          5           1
 Q glutamine           4.9          5           1
 R arginine            3.9          4           1
 S serine              6.8          7           1
 T threonine           6.8          7           1
 V valine              3.9          4           1
 W tryptophan          4.9          5           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell leukemia translocation altered 
PTPRCAP               0.042   protein tyrosine phosphatase, receptor type, C-associ...
ELOVL3                0.010   elongation of very long chain fatty acids like 3 [Ho...
PTCHD2                0.010   patched domain containing 2 
CACNG8                0.005   voltage-dependent calcium channel gamma-8 subunit [H...
SCN5A                 0.005   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.005   voltage-gated sodium channel type V alpha isoform e...
SCN5A                 0.005   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.005   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.005   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.005   voltage-gated sodium channel type V alpha isoform c...
SCN1A                 0.005   sodium channel, voltage-gated, type I, alpha 
LOC100294386          0.005   PREDICTED: similar to sodium channel, voltage-gated...
ZAK                   0.005   MLK-related kinase isoform 2 
ZAK                   0.005   MLK-related kinase isoform 1 
ZNF526                0.005   zinc finger protein 526 
TMEM198               0.005   transmembrane protein 198 
GLTPD2                0.005   glycolipid transfer protein domain containing 2 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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