Guide to the Human Genome
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Search of human proteins with 5031759

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5031759 homeobox A11 [Homo sapiens]
         (313 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5031759 homeobox A11 [Homo sapiens]                                640   0.0  
gi|7657166 homeobox C11 [Homo sapiens]                                283   2e-76
gi|23510368 homeobox D11 [Homo sapiens]                               269   3e-72
gi|182765442 homeobox A10 isoform a [Homo sapiens]                    118   6e-27
gi|24497533 homeobox C10 [Homo sapiens]                               112   6e-25
gi|194363768 homeobox D9 [Homo sapiens]                               106   2e-23
gi|23097236 homeobox A9 [Homo sapiens]                                106   2e-23
gi|24497547 homeobox C9 [Homo sapiens]                                104   9e-23
gi|15029508 homeobox B9 [Homo sapiens]                                102   4e-22
gi|23510366 homeobox D10 [Homo sapiens]                               100   1e-21
gi|24497551 homeobox A10 isoform b [Homo sapiens]                     100   2e-21
gi|194353946 homeobox D12 [Homo sapiens]                               87   2e-17
gi|24497517 homeobox A5 [Homo sapiens]                                 86   3e-17
gi|4504469 homeobox B5 [Homo sapiens]                                  84   2e-16
gi|19923391 homeobox D3 [Homo sapiens]                                 84   2e-16
gi|24497536 homeobox C13 [Homo sapiens]                                83   4e-16
gi|24497554 homeobox A13 [Homo sapiens]                                82   5e-16
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]              82   6e-16
gi|84105335 mesenchyme homeobox 2 [Homo sapiens]                       82   8e-16
gi|27804315 homeobox C12 [Homo sapiens]                                82   8e-16
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]             81   1e-15
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       80   2e-15
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       80   2e-15
gi|116734702 homeobox D13 [Homo sapiens]                               80   2e-15
gi|4504465 homeobox B2 [Homo sapiens]                                  80   3e-15
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     79   5e-15
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     79   7e-15
gi|24497515 homeobox A3 isoform b [Homo sapiens]                       78   9e-15
gi|13273317 homeobox B8 [Homo sapiens]                                 78   1e-14
gi|13489077 homeobox A6 [Homo sapiens]                                 77   2e-14

>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score =  640 bits (1650), Expect = 0.0
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV 60
           MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV
Sbjct: 1   MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV 60

Query: 61  TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP 120
           TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP
Sbjct: 61  TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP 120

Query: 121 AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA 180
           AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA
Sbjct: 121 AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA 180

Query: 181 AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR 240
           AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR
Sbjct: 181 AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR 240

Query: 241 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN 300
           TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN
Sbjct: 241 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN 300

Query: 301 RDRLQYYSANPLL 313
           RDRLQYYSANPLL
Sbjct: 301 RDRLQYYSANPLL 313


>gi|7657166 homeobox C11 [Homo sapiens]
          Length = 304

 Score =  283 bits (723), Expect = 2e-76
 Identities = 160/317 (50%), Positives = 203/317 (64%), Gaps = 38/317 (11%)

Query: 2   DFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVT 61
           DF ERG C+SN+YLPSCTYY+  P+FS++ SFLPQ PS R ++Y YS+ +P   PVREV+
Sbjct: 21  DFGERGSCASNLYLPSCTYYM--PEFSTVSSFLPQAPS-RQISYPYSAQVP---PVREVS 74

Query: 62  FREYAIEPATKWHPRGNLAHCYSA-EELVHRDCLQAPSAAGVPGDVLAKSSANV--YHHP 118
              Y +EP+ KWH R + + CY+A +EL+HR+CL   +      ++L K+  +   +HHP
Sbjct: 75  ---YGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVT----EILMKNEGSYGGHHHP 127

Query: 119 TP--AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATS 176
           +   A  + FYS+V +N VLPQAFD+FF+ AY    +  +      K   KG P A   S
Sbjct: 128 SAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPAS 187

Query: 177 AAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGS 236
             A+ A  GA A                   E +E    P SS S  S +     K    
Sbjct: 188 GLASRAEAGAEA-------------------EAEEENTNPSSSGSAHSVAKEPA-KGAAP 227

Query: 237 SGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 296
           +  RTRKKRCPY+K+QIRELEREFFF+VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE
Sbjct: 228 NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 287

Query: 297 KKINRDRLQYYSANPLL 313
           KK++RDRLQY+S NPLL
Sbjct: 288 KKLSRDRLQYFSGNPLL 304


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score =  269 bits (687), Expect = 3e-72
 Identities = 168/352 (47%), Positives = 192/352 (54%), Gaps = 58/352 (16%)

Query: 2   DFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNL-PQVQPVREV 60
           DFDE G  +++MYLP C YYV+  DF+S PSFL Q PSS  MT+ YSSNL P VQPVREV
Sbjct: 3   DFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQ-PSSCQMTFPYSSNLAPHVQPVREV 61

Query: 61  TFREYAIEPATKWHPRGN-----------------------------------LAHCYSA 85
            FR+Y +E A KW  RG                                     A   +A
Sbjct: 62  AFRDYGLERA-KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 120

Query: 86  EELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP-----AVSSNFYSTVGRNGVLPQAF 140
           EE   +  L  P  AG   DVL K+   V   P P       +SNFYS VGRNG+LPQ F
Sbjct: 121 EEAAMQRELLPP--AGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGF 178

Query: 141 DQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200
           DQF+E A            PG   A   PP   A      AA  G P T +   GGG  C
Sbjct: 179 DQFYEAA------------PGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAG-GGGGSPC 225

Query: 201 RETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREF 260
            +    +E K                   E  +   + QR+RKKRCPYTKYQIRELEREF
Sbjct: 226 TKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREF 285

Query: 261 FFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPL 312
           FF+VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK+NRDRLQY++ NPL
Sbjct: 286 FFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337


>gi|182765442 homeobox A10 isoform a [Homo sapiens]
          Length = 410

 Score =  118 bits (296), Expect = 6e-27
 Identities = 72/154 (46%), Positives = 96/154 (62%), Gaps = 12/154 (7%)

Query: 169 PPAATATSAAAA----AAATGAPATSSSDSGGGGGCRETA----AAAEEKERRRRPESSS 220
           PPA  + SA AA    A  +  P T +  SGGG    E A    +AAEE        S +
Sbjct: 253 PPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKA 312

Query: 221 SPESSS---GHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277
           SPE  S      E+ A   + +  RKKRCPYTK+Q  ELE+EF F++Y+ +E+RL++SR 
Sbjct: 313 SPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372

Query: 278 LNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310
           ++LTDRQVKIWFQNRRMK KK+NR+ R++  +AN
Sbjct: 373 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTAN 406


>gi|24497533 homeobox C10 [Homo sapiens]
          Length = 342

 Score =  112 bits (279), Expect = 6e-25
 Identities = 96/296 (32%), Positives = 145/296 (48%), Gaps = 37/296 (12%)

Query: 28  SSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEE 87
           ++ PS+L Q  S      +Y    P  +P+   ++      P+ K     N+   YSAE+
Sbjct: 67  NTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSY-----PPSVK---EENVCCMYSAEK 118

Query: 88  LVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAV--SSNFYSTVGRNGVLPQAFD---Q 142
                    P AA +    L +S    +  P P+   +S  YS + +      A D    
Sbjct: 119 RAK----SGPEAA-LYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAP 173

Query: 143 FFETAYGTP--ENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200
           F + A   P  E+L S    G  S  + P + + T +           T  S +G  G  
Sbjct: 174 FEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIK------TEQSLAGPKGSP 227

Query: 201 RETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSG-----QRTRKKRCPYTKYQIRE 255
            E+     EKER +  +SS     +    E KA  ++G     +  RKKRCPYTK+Q  E
Sbjct: 228 SES-----EKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLE 282

Query: 256 LEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310
           LE+EF F++Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK+NR+ R++  ++N
Sbjct: 283 LEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSN 338


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score =  106 bits (265), Expect = 2e-23
 Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 16/137 (11%)

Query: 177 AAAAAAATGAPATSSSDSGGGGGCRETAAA----------AEEKERRRRPESSSSPESSS 226
           AAAA   TG  A   + +G GG    +A +           EEK+  +  +    P + +
Sbjct: 217 AAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPA 276

Query: 227 GHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVK 286
                 A     + TRKKRCPYTKYQ  ELE+EF F++Y+ +++R +++R+LNLT+RQVK
Sbjct: 277 ------ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVK 330

Query: 287 IWFQNRRMKEKKINRDR 303
           IWFQNRRMK KK+++++
Sbjct: 331 IWFQNRRMKMKKMSKEK 347


>gi|23097236 homeobox A9 [Homo sapiens]
          Length = 272

 Score =  106 bits (265), Expect = 2e-23
 Identities = 86/294 (29%), Positives = 124/294 (42%), Gaps = 36/294 (12%)

Query: 12  NMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPAT 71
           N Y+ S        D  S+  + P T    P   +  +  P   P    +F+  A     
Sbjct: 9   NYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPC---SFQSKATVFGA 65

Query: 72  KWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHP-TPAVSSNFYSTV 130
            W+P                  + A  A  VP  V      + Y HP  P  ++      
Sbjct: 66  SWNP------------------VHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRY 107

Query: 131 GRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGP-PAATATSAAAAAAATGAPAT 189
            R+ + P      F    G P +      P   SA +G  P     + +    A G+P  
Sbjct: 108 MRSWLEPTPGALSFA---GLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV 164

Query: 190 SSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYT 249
                   G   E  A   E    + P   ++P ++  H            TRKKRCPYT
Sbjct: 165 DREKQPSEGAFSENNAE-NESGGDKPPIDPNNPAANWLHARS---------TRKKRCPYT 214

Query: 250 KYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303
           K+Q  ELE+EF F++Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KKIN+DR
Sbjct: 215 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268


>gi|24497547 homeobox C9 [Homo sapiens]
          Length = 260

 Score =  104 bits (260), Expect = 9e-23
 Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 13/105 (12%)

Query: 212 RRRRPESSSSPESS----SGHTEDKA---------GGSSGQRTRKKRCPYTKYQIRELER 258
           R R P++  SPE+     S H E+KA              + TRKKRCPYTKYQ  ELE+
Sbjct: 150 RDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEK 209

Query: 259 EFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303
           EF F++Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+N+++
Sbjct: 210 EFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 254


>gi|15029508 homeobox B9 [Homo sapiens]
          Length = 250

 Score =  102 bits (254), Expect = 4e-22
 Identities = 79/242 (32%), Positives = 118/242 (48%), Gaps = 36/242 (14%)

Query: 75  PRGNLAHCYSAEELVHRDCLQAPSAAGVP-GDVLAKSSANVYHHPTPAVSSNFYSTVGRN 133
           P G  A   S+ +  H + L+ PS +  P   V   S A +  H + ++ S ++  +   
Sbjct: 29  PSGQYA---SSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQ 85

Query: 134 GVLPQAFDQFFET-AYGTPENLASSDYPGD-KSAEKGPPAATATSAAAAAAATGAPATSS 191
           GV P A  ++  T     P   A+   PG  ++A K  P      A       G P  S 
Sbjct: 86  GV-PPAESRYLRTWLEPAPRGEAA---PGQGQAAVKAEPLL---GAPGELLKQGTPEYSL 138

Query: 192 SDSGG----------GGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRT 241
             S G          G G  +    +E+KER                T   A     + +
Sbjct: 139 ETSAGREAVLSNQRPGYGDNKICEGSEDKER-------------PDQTNPSANWLHARSS 185

Query: 242 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301
           RKKRCPYTKYQ  ELE+EF F++Y+ +++R +++R+LNL++RQVKIWFQNRRMK KK+N+
Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245

Query: 302 DR 303
           ++
Sbjct: 246 EQ 247


>gi|23510366 homeobox D10 [Homo sapiens]
          Length = 340

 Score =  100 bits (250), Expect = 1e-21
 Identities = 51/110 (46%), Positives = 75/110 (68%), Gaps = 8/110 (7%)

Query: 202 ETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFF 261
           E + ++ E + +   E   S   +S     K+G       RKKRCPYTK+Q  ELE+EF 
Sbjct: 234 EVSVSSPEVQEKESKEEIKSDTPTSNWLTAKSG-------RKKRCPYTKHQTLELEKEFL 286

Query: 262 FSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310
           F++Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK++R+ R++  +AN
Sbjct: 287 FNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTAN 336


>gi|24497551 homeobox A10 isoform b [Homo sapiens]
          Length = 94

 Score =  100 bits (248), Expect = 2e-21
 Identities = 47/82 (57%), Positives = 66/82 (80%), Gaps = 1/82 (1%)

Query: 230 EDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWF 289
           E+ A   + +  RKKRCPYTK+Q  ELE+EF F++Y+ +E+RL++SR ++LTDRQVKIWF
Sbjct: 9   ENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWF 68

Query: 290 QNRRMKEKKINRD-RLQYYSAN 310
           QNRRMK KK+NR+ R++  +AN
Sbjct: 69  QNRRMKLKKMNRENRIRELTAN 90


>gi|194353946 homeobox D12 [Homo sapiens]
          Length = 270

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query: 235 GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 294
           G++  R RKKR PYTK QI ELE EF  + +IN++KR +LS  LNL+D+QVKIWFQNRRM
Sbjct: 196 GAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRM 255

Query: 295 KEKKI 299
           K+K++
Sbjct: 256 KKKRV 260


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%)

Query: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESS 219
           PG  S   G  + + +S A+A A +    +S    G   G  E A A+ E+   +   S 
Sbjct: 110 PGSDSHHGGKNSLSNSSGASADAGS-THISSREGVGTASGAEEDAPASSEQASAQSEPSP 168

Query: 220 SSPESSSGH--------TEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKR 271
           + P     +        + D  GG  G+R R     YT+YQ  ELE+EF F+ Y+ + +R
Sbjct: 169 APPAQPQIYPWMRKLHISHDNIGGPEGKRARTA---YTRYQTLELEKEFHFNRYLTRRRR 225

Query: 272 LQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301
           ++++  L L++RQ+KIWFQNRRMK KK N+
Sbjct: 226 IEIAHALCLSERQIKIWFQNRRMKWKKDNK 255


>gi|4504469 homeobox B5 [Homo sapiens]
          Length = 269

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 24/207 (11%)

Query: 109 KSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKG 168
           +SSA+  H      SS  +    +     QA       +  +PE+L  ++  GD    K 
Sbjct: 58  RSSASSSHFGAVGESSRAFPAPAQEPRFRQAASS---CSLSSPESLPCTN--GDSHGAK- 111

Query: 169 PPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKE-RRRRPE----SSSSPE 223
            P+A++ S  A +A++ A  T   ++       E A+        R +PE    S+++PE
Sbjct: 112 -PSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPE 170

Query: 224 SSSG---------HTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQL 274
             +          H      G  G+R R     YT+YQ  ELE+EF F+ Y+ + +R+++
Sbjct: 171 GQTPQIFPWMRKLHISHDMTGPDGKRARTA---YTRYQTLELEKEFHFNRYLTRRRRIEI 227

Query: 275 SRMLNLTDRQVKIWFQNRRMKEKKINR 301
           +  L L++RQ+KIWFQNRRMK KK N+
Sbjct: 228 AHALCLSERQIKIWFQNRRMKWKKDNK 254


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 13/153 (8%)

Query: 151 PENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEE- 209
           P  L S   P     +  PP  T   ++      G PA      GG      +A  +++ 
Sbjct: 107 PPGLNSEQQP----PQPPPPPPTLPPSSPTNPGGGVPA--KKPKGGPNASSSSATISKQI 160

Query: 210 ----KERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVY 265
               KE R+  +  +S  ++    EDK+    G  +++ R  YT  Q+ ELE+EF F+ Y
Sbjct: 161 FPWMKESRQNSKQKNSCATAGESCEDKS--PPGPASKRVRTAYTSAQLVELEKEFHFNRY 218

Query: 266 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298
           + + +R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 219 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251


>gi|24497536 homeobox C13 [Homo sapiens]
          Length = 330

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 39/64 (60%), Positives = 51/64 (79%)

Query: 236 SSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMK 295
           SS +R RKKR PYTK Q++ELE+E+  S +I KEKR ++S   NL++RQV IWFQNRR+K
Sbjct: 255 SSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVK 314

Query: 296 EKKI 299
           EKK+
Sbjct: 315 EKKV 318


>gi|24497554 homeobox A13 [Homo sapiens]
          Length = 388

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 6/92 (6%)

Query: 210 KERRRRPE--SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYIN 267
           KE+ + P    S+ P+  S H  D    SS +R RKKR PYTK Q++ELERE+  + +I 
Sbjct: 293 KEQAQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 348

Query: 268 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 299
           K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 349 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 96  APSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLA 155
           A +AA       A +    + HP  A +   +S          A           P  LA
Sbjct: 39  AAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLA 98

Query: 156 SSDYPGDKSAE-KGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRR 214
                   SA  + PP+A A +AAAAAAA  A A SSS   G  G     AA +      
Sbjct: 99  PGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSA 158

Query: 215 RPESSSSP 222
             +SSS P
Sbjct: 159 AAQSSSGP 166



 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 162 DKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAA 207
           +K+ E    AA A +AAAAA A G      + +  GG     AAAA
Sbjct: 32  NKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAA 77


>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
          Length = 254

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 13/136 (9%)

Query: 164 SAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPE 223
           S   G      TS+      TG P       G       TA   E+K  RRR ESS + E
Sbjct: 107 SGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGS------TANETEKKSSRRRKESSDNQE 160

Query: 224 SSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDR 283
           +       K  GSS  + RK+R  +TK Q+RELE EF    Y+ + +R +++  L+L++R
Sbjct: 161 NRG-----KPEGSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSER 213

Query: 284 QVKIWFQNRRMKEKKI 299
           QVK+WFQNRRMK K++
Sbjct: 214 QVKVWFQNRRMKWKRV 229


>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
          Length = 304

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 9/142 (6%)

Query: 158 DYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPE 217
           D  G       PP   + S++  ++     A +  D G     R+  + AE ++R     
Sbjct: 113 DSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYG-----RQALSPAEAEKRSGGKR 167

Query: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277
            S S +S  G+ + +       + RK+R  +TK QIRELE EF    Y+ + +R +++  
Sbjct: 168 KSDSSDSQEGNYKSEVNS----KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVN 223

Query: 278 LNLTDRQVKIWFQNRRMKEKKI 299
           L+LT+RQVK+WFQNRRMK K++
Sbjct: 224 LDLTERQVKVWFQNRRMKWKRV 245


>gi|27804315 homeobox C12 [Homo sapiens]
          Length = 282

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 28/167 (16%)

Query: 161 GDKSAEKG-PPAATATSAAAAAAATGAPATSSS-DSGGGGGCRETAAAAEEKERRRRPES 218
           G K  E+G  P A   +A      +G PA     D   GGG  +    A         +S
Sbjct: 106 GLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQS 165

Query: 219 SSSPESSSGHTEDKAGGSSGQ--------------------------RTRKKRCPYTKYQ 252
             S  SSS   E   G  +G                           R+RKKR PY+K Q
Sbjct: 166 LESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQ 225

Query: 253 IRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 299
           + ELE EF  + +I +++R +LS  LNL+D+QVKIWFQNRRMK+K++
Sbjct: 226 LAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272


>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
          Length = 139

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 13/125 (10%)

Query: 175 TSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAG 234
           TS+      TG P       G       TA   E+K  RRR ESS + E+       K  
Sbjct: 3   TSSLGLVDTTGGPGDDYGVLGS------TANETEKKSSRRRKESSDNQENRG-----KPE 51

Query: 235 GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 294
           GSS  + RK+R  +TK Q+RELE EF    Y+ + +R +++  L+L++RQVK+WFQNRRM
Sbjct: 52  GSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRM 109

Query: 295 KEKKI 299
           K K++
Sbjct: 110 KWKRV 114


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)

Query: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKER--RRRPE 217
           P    A   PP++ +    A+   T A A  S         ++     +E  +  +++  
Sbjct: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTS 171

Query: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277
           SSSS ES +G        SS    ++ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +
Sbjct: 172 SSSSGESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 227

Query: 278 LNLTDRQVKIWFQNRRMKEKK 298
           LNLT+RQ+KIWFQNRRMK KK
Sbjct: 228 LNLTERQIKIWFQNRRMKYKK 248



 Score = 30.4 bits (67), Expect = 2.1
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 96  APSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLA 155
           AP+ A  P    A    N  ++PTPA ++     +    V  Q F    E+   T +  +
Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTPANAAK-SPLLNSPTVAKQIFPWMKESRQNTKQKTS 171

Query: 156 SSDYPGDKSAEKGPPAATATSAAAAAAATGA 186
           SS      + +K PP   A+S  A  A T A
Sbjct: 172 SSSSGESCAGDKSPP-GQASSKRARTAYTSA 201


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)

Query: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKER--RRRPE 217
           P    A   PP++ +    A+   T A A  S         ++     +E  +  +++  
Sbjct: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTS 171

Query: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277
           SSSS ES +G        SS    ++ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +
Sbjct: 172 SSSSGESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 227

Query: 278 LNLTDRQVKIWFQNRRMKEKK 298
           LNLT+RQ+KIWFQNRRMK KK
Sbjct: 228 LNLTERQIKIWFQNRRMKYKK 248



 Score = 30.4 bits (67), Expect = 2.1
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 96  APSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLA 155
           AP+ A  P    A    N  ++PTPA ++     +    V  Q F    E+   T +  +
Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTPANAAK-SPLLNSPTVAKQIFPWMKESRQNTKQKTS 171

Query: 156 SSDYPGDKSAEKGPPAATATSAAAAAAATGA 186
           SS      + +K PP   A+S  A  A T A
Sbjct: 172 SSSSGESCAGDKSPP-GQASSKRARTAYTSA 201


>gi|116734702 homeobox D13 [Homo sapiens]
          Length = 343

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 49/61 (80%)

Query: 239 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298
           +R RKKR PYTK Q++ELE E+  + +INK+KR ++S   NL++RQV IWFQNRR+K+KK
Sbjct: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333

Query: 299 I 299
           I
Sbjct: 334 I 334



 Score = 33.9 bits (76), Expect = 0.19
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 162 DKSAEKGPPAATATSAAAAAAATG-------APATSSSDSG-GGGGCRETAAAAEEKERR 213
           D     G PA++++S+ AAAAA+G       AP  + + SG         AAAA      
Sbjct: 15  DGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGF 74

Query: 214 RRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCP 247
             P +S    SSS  +      +  +    K CP
Sbjct: 75  AYPGTSERTGSSSSSSSSAVVAARPEAPPAKECP 108



 Score = 28.5 bits (62), Expect = 8.0
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 154 LASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERR 213
           L++  + G  S      AA A +AAAAA+    P TS               AA      
Sbjct: 44  LSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAA------ 97

Query: 214 RRPESSSSPE 223
            RPE+  + E
Sbjct: 98  -RPEAPPAKE 106


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 120 PAVSSNFYSTVGRNGVL---PQAFDQFFETAYGTPENLASSDYPGDKSAEKGP--PAATA 174
           PAV   F ++  +   L   P  F+Q F +       L        K AE GP  P    
Sbjct: 26  PAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPR--SQKRAEDGPALPPPPP 83

Query: 175 TSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAG 234
               AA  A   P             +++A    +      P +S+ P S  G   D  G
Sbjct: 84  PPLPAAPPAPEFPWMKE---------KKSAKKPSQSATSPSPAASAVPASGVGSPADGLG 134

Query: 235 --GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 292
              + G   R+ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +L+LT+RQVK+WFQNR
Sbjct: 135 LPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNR 194

Query: 293 RMKEKKINRDR 303
           RMK K+  + R
Sbjct: 195 RMKHKRQTQHR 205


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 146 TAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSG--------GG 197
           TA+G P      D+          PAA+  S A       +P  +    G        GG
Sbjct: 59  TAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGG 118

Query: 198 GGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKK-RCPYTKYQIREL 256
            G   +  A     +R  P        ++G      GGS   RT+ K R  YT +Q  EL
Sbjct: 119 PGTPSSPGA-----QRPTPYEWMRRSVAAGG----GGGSGKTRTKDKYRVVYTDHQRLEL 169

Query: 257 EREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQ 305
           E+EF +S YI   ++ +L+  L LT+RQVKIWFQNRR KE+K+N+ + Q
Sbjct: 170 EKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQ 218


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 149 GTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAE 208
           G+P        P D      P       AAA + A+G   T +    G          + 
Sbjct: 99  GSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSP 158

Query: 209 EKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKK-RCPYTKYQIRELEREFFFSVYIN 267
             +RR   E    P   S       G     RT+ K R  YT +Q  ELE+EF +S YI 
Sbjct: 159 GGQRRNLCEWMRKPAQQS------LGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 212

Query: 268 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQ 305
             ++ +L+  L L++RQVKIWFQNRR KE+KIN+ +LQ
Sbjct: 213 IRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQ 250


>gi|24497515 homeobox A3 isoform b [Homo sapiens]
          Length = 285

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 213 RRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRL 272
           +++  SSSS ES +G        SS    ++ R  YT  Q+ ELE+EF F+ Y+ + +R+
Sbjct: 9   KQKTSSSSSGESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRV 64

Query: 273 QLSRMLNLTDRQVKIWFQNRRMKEKK 298
           +++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 65  EMANLLNLTERQIKIWFQNRRMKYKK 90


>gi|13273317 homeobox B8 [Homo sapiens]
          Length = 243

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 61/211 (28%), Positives = 88/211 (41%), Gaps = 32/211 (15%)

Query: 92  DCLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTP 151
           DC  A    G P  V   SS   + HP+      FY         P   +      +G P
Sbjct: 25  DCGFAQDLGGRPTVVYGPSSGGSFQHPSQI--QEFYHGPSSLSTAPYQQNPCAVACHGDP 82

Query: 152 ENLASSDYPGDKS--AEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEE 209
            N    D    +S    + P          AAA+               G  E A  +E+
Sbjct: 83  GNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAAS---------------GLGEEAEGSEQ 127

Query: 210 KERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKE 269
                +      P++++G              R+ R  Y++YQ  ELE+EF F+ Y+ ++
Sbjct: 128 SPSPTQLFPWMRPQAAAGR-------------RRGRQTYSRYQTLELEKEFLFNPYLTRK 174

Query: 270 KRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN 300
           +R+++S  L LT+RQVKIWFQNRRMK KK N
Sbjct: 175 RRIEVSHALGLTERQVKIWFQNRRMKWKKEN 205


>gi|13489077 homeobox A6 [Homo sapiens]
          Length = 233

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 23/109 (21%)

Query: 216 PESSSSPESSSG-----HTEDK------------------AGGSSGQRTRKKRCPYTKYQ 252
           PE    P+SSSG     H E                    AG   G   R+ R  YT+YQ
Sbjct: 107 PEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQ 166

Query: 253 IRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301
             ELE+EF F+ Y+ + +R++++  L LT+RQ+KIWFQNRRMK KK N+
Sbjct: 167 TLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.127    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,980,699
Number of Sequences: 37866
Number of extensions: 737909
Number of successful extensions: 9314
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 6132
Number of HSP's gapped (non-prelim): 2591
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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