BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5031759 homeobox A11 [Homo sapiens] (313 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|5031759 homeobox A11 [Homo sapiens] 640 0.0 gi|7657166 homeobox C11 [Homo sapiens] 283 2e-76 gi|23510368 homeobox D11 [Homo sapiens] 269 3e-72 gi|182765442 homeobox A10 isoform a [Homo sapiens] 118 6e-27 gi|24497533 homeobox C10 [Homo sapiens] 112 6e-25 gi|194363768 homeobox D9 [Homo sapiens] 106 2e-23 gi|23097236 homeobox A9 [Homo sapiens] 106 2e-23 gi|24497547 homeobox C9 [Homo sapiens] 104 9e-23 gi|15029508 homeobox B9 [Homo sapiens] 102 4e-22 gi|23510366 homeobox D10 [Homo sapiens] 100 1e-21 gi|24497551 homeobox A10 isoform b [Homo sapiens] 100 2e-21 gi|194353946 homeobox D12 [Homo sapiens] 87 2e-17 gi|24497517 homeobox A5 [Homo sapiens] 86 3e-17 gi|4504469 homeobox B5 [Homo sapiens] 84 2e-16 gi|19923391 homeobox D3 [Homo sapiens] 84 2e-16 gi|24497536 homeobox C13 [Homo sapiens] 83 4e-16 gi|24497554 homeobox A13 [Homo sapiens] 82 5e-16 gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 82 6e-16 gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 82 8e-16 gi|27804315 homeobox C12 [Homo sapiens] 82 8e-16 gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 81 1e-15 gi|24497513 homeobox A3 isoform a [Homo sapiens] 80 2e-15 gi|13562112 homeobox A3 isoform a [Homo sapiens] 80 2e-15 gi|116734702 homeobox D13 [Homo sapiens] 80 2e-15 gi|4504465 homeobox B2 [Homo sapiens] 80 3e-15 gi|121114296 caudal type homeobox 1 [Homo sapiens] 79 5e-15 gi|169636435 caudal type homeobox 2 [Homo sapiens] 79 7e-15 gi|24497515 homeobox A3 isoform b [Homo sapiens] 78 9e-15 gi|13273317 homeobox B8 [Homo sapiens] 78 1e-14 gi|13489077 homeobox A6 [Homo sapiens] 77 2e-14 >gi|5031759 homeobox A11 [Homo sapiens] Length = 313 Score = 640 bits (1650), Expect = 0.0 Identities = 313/313 (100%), Positives = 313/313 (100%) Query: 1 MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV 60 MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV Sbjct: 1 MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV 60 Query: 61 TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP 120 TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP Sbjct: 61 TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP 120 Query: 121 AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA 180 AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA Sbjct: 121 AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA 180 Query: 181 AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR 240 AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR Sbjct: 181 AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR 240 Query: 241 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN 300 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN Sbjct: 241 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN 300 Query: 301 RDRLQYYSANPLL 313 RDRLQYYSANPLL Sbjct: 301 RDRLQYYSANPLL 313 >gi|7657166 homeobox C11 [Homo sapiens] Length = 304 Score = 283 bits (723), Expect = 2e-76 Identities = 160/317 (50%), Positives = 203/317 (64%), Gaps = 38/317 (11%) Query: 2 DFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVT 61 DF ERG C+SN+YLPSCTYY+ P+FS++ SFLPQ PS R ++Y YS+ +P PVREV+ Sbjct: 21 DFGERGSCASNLYLPSCTYYM--PEFSTVSSFLPQAPS-RQISYPYSAQVP---PVREVS 74 Query: 62 FREYAIEPATKWHPRGNLAHCYSA-EELVHRDCLQAPSAAGVPGDVLAKSSANV--YHHP 118 Y +EP+ KWH R + + CY+A +EL+HR+CL + ++L K+ + +HHP Sbjct: 75 ---YGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVT----EILMKNEGSYGGHHHP 127 Query: 119 TP--AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATS 176 + A + FYS+V +N VLPQAFD+FF+ AY + + K KG P A S Sbjct: 128 SAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPAS 187 Query: 177 AAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGS 236 A+ A GA A E +E P SS S S + K Sbjct: 188 GLASRAEAGAEA-------------------EAEEENTNPSSSGSAHSVAKEPA-KGAAP 227 Query: 237 SGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 296 + RTRKKRCPY+K+QIRELEREFFF+VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE Sbjct: 228 NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 287 Query: 297 KKINRDRLQYYSANPLL 313 KK++RDRLQY+S NPLL Sbjct: 288 KKLSRDRLQYFSGNPLL 304 >gi|23510368 homeobox D11 [Homo sapiens] Length = 338 Score = 269 bits (687), Expect = 3e-72 Identities = 168/352 (47%), Positives = 192/352 (54%), Gaps = 58/352 (16%) Query: 2 DFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNL-PQVQPVREV 60 DFDE G +++MYLP C YYV+ DF+S PSFL Q PSS MT+ YSSNL P VQPVREV Sbjct: 3 DFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQ-PSSCQMTFPYSSNLAPHVQPVREV 61 Query: 61 TFREYAIEPATKWHPRGN-----------------------------------LAHCYSA 85 FR+Y +E A KW RG A +A Sbjct: 62 AFRDYGLERA-KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 120 Query: 86 EELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP-----AVSSNFYSTVGRNGVLPQAF 140 EE + L P AG DVL K+ V P P +SNFYS VGRNG+LPQ F Sbjct: 121 EEAAMQRELLPP--AGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGF 178 Query: 141 DQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200 DQF+E A PG A PP A AA G P T + GGG C Sbjct: 179 DQFYEAA------------PGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAG-GGGGSPC 225 Query: 201 RETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREF 260 + +E K E + + QR+RKKRCPYTKYQIRELEREF Sbjct: 226 TKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREF 285 Query: 261 FFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPL 312 FF+VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK+NRDRLQY++ NPL Sbjct: 286 FFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337 >gi|182765442 homeobox A10 isoform a [Homo sapiens] Length = 410 Score = 118 bits (296), Expect = 6e-27 Identities = 72/154 (46%), Positives = 96/154 (62%), Gaps = 12/154 (7%) Query: 169 PPAATATSAAAA----AAATGAPATSSSDSGGGGGCRETA----AAAEEKERRRRPESSS 220 PPA + SA AA A + P T + SGGG E A +AAEE S + Sbjct: 253 PPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKA 312 Query: 221 SPESSS---GHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277 SPE S E+ A + + RKKRCPYTK+Q ELE+EF F++Y+ +E+RL++SR Sbjct: 313 SPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372 Query: 278 LNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310 ++LTDRQVKIWFQNRRMK KK+NR+ R++ +AN Sbjct: 373 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTAN 406 >gi|24497533 homeobox C10 [Homo sapiens] Length = 342 Score = 112 bits (279), Expect = 6e-25 Identities = 96/296 (32%), Positives = 145/296 (48%), Gaps = 37/296 (12%) Query: 28 SSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEE 87 ++ PS+L Q S +Y P +P+ ++ P+ K N+ YSAE+ Sbjct: 67 NTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSY-----PPSVK---EENVCCMYSAEK 118 Query: 88 LVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAV--SSNFYSTVGRNGVLPQAFD---Q 142 P AA + L +S + P P+ +S YS + + A D Sbjct: 119 RAK----SGPEAA-LYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAP 173 Query: 143 FFETAYGTP--ENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200 F + A P E+L S G S + P + + T + T S +G G Sbjct: 174 FEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIK------TEQSLAGPKGSP 227 Query: 201 RETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSG-----QRTRKKRCPYTKYQIRE 255 E+ EKER + +SS + E KA ++G + RKKRCPYTK+Q E Sbjct: 228 SES-----EKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLE 282 Query: 256 LEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310 LE+EF F++Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK+NR+ R++ ++N Sbjct: 283 LEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSN 338 >gi|194363768 homeobox D9 [Homo sapiens] Length = 352 Score = 106 bits (265), Expect = 2e-23 Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 16/137 (11%) Query: 177 AAAAAAATGAPATSSSDSGGGGGCRETAAA----------AEEKERRRRPESSSSPESSS 226 AAAA TG A + +G GG +A + EEK+ + + P + + Sbjct: 217 AAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPA 276 Query: 227 GHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVK 286 A + TRKKRCPYTKYQ ELE+EF F++Y+ +++R +++R+LNLT+RQVK Sbjct: 277 ------ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVK 330 Query: 287 IWFQNRRMKEKKINRDR 303 IWFQNRRMK KK+++++ Sbjct: 331 IWFQNRRMKMKKMSKEK 347 >gi|23097236 homeobox A9 [Homo sapiens] Length = 272 Score = 106 bits (265), Expect = 2e-23 Identities = 86/294 (29%), Positives = 124/294 (42%), Gaps = 36/294 (12%) Query: 12 NMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPAT 71 N Y+ S D S+ + P T P + + P P +F+ A Sbjct: 9 NYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPC---SFQSKATVFGA 65 Query: 72 KWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHP-TPAVSSNFYSTV 130 W+P + A A VP V + Y HP P ++ Sbjct: 66 SWNP------------------VHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRY 107 Query: 131 GRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGP-PAATATSAAAAAAATGAPAT 189 R+ + P F G P + P SA +G P + + A G+P Sbjct: 108 MRSWLEPTPGALSFA---GLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV 164 Query: 190 SSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYT 249 G E A E + P ++P ++ H TRKKRCPYT Sbjct: 165 DREKQPSEGAFSENNAE-NESGGDKPPIDPNNPAANWLHARS---------TRKKRCPYT 214 Query: 250 KYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303 K+Q ELE+EF F++Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KKIN+DR Sbjct: 215 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268 >gi|24497547 homeobox C9 [Homo sapiens] Length = 260 Score = 104 bits (260), Expect = 9e-23 Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 13/105 (12%) Query: 212 RRRRPESSSSPESS----SGHTEDKA---------GGSSGQRTRKKRCPYTKYQIRELER 258 R R P++ SPE+ S H E+KA + TRKKRCPYTKYQ ELE+ Sbjct: 150 RDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEK 209 Query: 259 EFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303 EF F++Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+N+++ Sbjct: 210 EFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 254 >gi|15029508 homeobox B9 [Homo sapiens] Length = 250 Score = 102 bits (254), Expect = 4e-22 Identities = 79/242 (32%), Positives = 118/242 (48%), Gaps = 36/242 (14%) Query: 75 PRGNLAHCYSAEELVHRDCLQAPSAAGVP-GDVLAKSSANVYHHPTPAVSSNFYSTVGRN 133 P G A S+ + H + L+ PS + P V S A + H + ++ S ++ + Sbjct: 29 PSGQYA---SSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQ 85 Query: 134 GVLPQAFDQFFET-AYGTPENLASSDYPGD-KSAEKGPPAATATSAAAAAAATGAPATSS 191 GV P A ++ T P A+ PG ++A K P A G P S Sbjct: 86 GV-PPAESRYLRTWLEPAPRGEAA---PGQGQAAVKAEPLL---GAPGELLKQGTPEYSL 138 Query: 192 SDSGG----------GGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRT 241 S G G G + +E+KER T A + + Sbjct: 139 ETSAGREAVLSNQRPGYGDNKICEGSEDKER-------------PDQTNPSANWLHARSS 185 Query: 242 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301 RKKRCPYTKYQ ELE+EF F++Y+ +++R +++R+LNL++RQVKIWFQNRRMK KK+N+ Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245 Query: 302 DR 303 ++ Sbjct: 246 EQ 247 >gi|23510366 homeobox D10 [Homo sapiens] Length = 340 Score = 100 bits (250), Expect = 1e-21 Identities = 51/110 (46%), Positives = 75/110 (68%), Gaps = 8/110 (7%) Query: 202 ETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFF 261 E + ++ E + + E S +S K+G RKKRCPYTK+Q ELE+EF Sbjct: 234 EVSVSSPEVQEKESKEEIKSDTPTSNWLTAKSG-------RKKRCPYTKHQTLELEKEFL 286 Query: 262 FSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310 F++Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK++R+ R++ +AN Sbjct: 287 FNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTAN 336 >gi|24497551 homeobox A10 isoform b [Homo sapiens] Length = 94 Score = 100 bits (248), Expect = 2e-21 Identities = 47/82 (57%), Positives = 66/82 (80%), Gaps = 1/82 (1%) Query: 230 EDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWF 289 E+ A + + RKKRCPYTK+Q ELE+EF F++Y+ +E+RL++SR ++LTDRQVKIWF Sbjct: 9 ENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWF 68 Query: 290 QNRRMKEKKINRD-RLQYYSAN 310 QNRRMK KK+NR+ R++ +AN Sbjct: 69 QNRRMKLKKMNRENRIRELTAN 90 >gi|194353946 homeobox D12 [Homo sapiens] Length = 270 Score = 86.7 bits (213), Expect = 2e-17 Identities = 40/65 (61%), Positives = 52/65 (80%) Query: 235 GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 294 G++ R RKKR PYTK QI ELE EF + +IN++KR +LS LNL+D+QVKIWFQNRRM Sbjct: 196 GAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRM 255 Query: 295 KEKKI 299 K+K++ Sbjct: 256 KKKRV 260 >gi|24497517 homeobox A5 [Homo sapiens] Length = 270 Score = 86.3 bits (212), Expect = 3e-17 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%) Query: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESS 219 PG S G + + +S A+A A + +S G G E A A+ E+ + S Sbjct: 110 PGSDSHHGGKNSLSNSSGASADAGS-THISSREGVGTASGAEEDAPASSEQASAQSEPSP 168 Query: 220 SSPESSSGH--------TEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKR 271 + P + + D GG G+R R YT+YQ ELE+EF F+ Y+ + +R Sbjct: 169 APPAQPQIYPWMRKLHISHDNIGGPEGKRARTA---YTRYQTLELEKEFHFNRYLTRRRR 225 Query: 272 LQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301 ++++ L L++RQ+KIWFQNRRMK KK N+ Sbjct: 226 IEIAHALCLSERQIKIWFQNRRMKWKKDNK 255 >gi|4504469 homeobox B5 [Homo sapiens] Length = 269 Score = 84.0 bits (206), Expect = 2e-16 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 24/207 (11%) Query: 109 KSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKG 168 +SSA+ H SS + + QA + +PE+L ++ GD K Sbjct: 58 RSSASSSHFGAVGESSRAFPAPAQEPRFRQAASS---CSLSSPESLPCTN--GDSHGAK- 111 Query: 169 PPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKE-RRRRPE----SSSSPE 223 P+A++ S A +A++ A T ++ E A+ R +PE S+++PE Sbjct: 112 -PSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPE 170 Query: 224 SSSG---------HTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQL 274 + H G G+R R YT+YQ ELE+EF F+ Y+ + +R+++ Sbjct: 171 GQTPQIFPWMRKLHISHDMTGPDGKRARTA---YTRYQTLELEKEFHFNRYLTRRRRIEI 227 Query: 275 SRMLNLTDRQVKIWFQNRRMKEKKINR 301 + L L++RQ+KIWFQNRRMK KK N+ Sbjct: 228 AHALCLSERQIKIWFQNRRMKWKKDNK 254 >gi|19923391 homeobox D3 [Homo sapiens] Length = 432 Score = 83.6 bits (205), Expect = 2e-16 Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 13/153 (8%) Query: 151 PENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEE- 209 P L S P + PP T ++ G PA GG +A +++ Sbjct: 107 PPGLNSEQQP----PQPPPPPPTLPPSSPTNPGGGVPA--KKPKGGPNASSSSATISKQI 160 Query: 210 ----KERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVY 265 KE R+ + +S ++ EDK+ G +++ R YT Q+ ELE+EF F+ Y Sbjct: 161 FPWMKESRQNSKQKNSCATAGESCEDKS--PPGPASKRVRTAYTSAQLVELEKEFHFNRY 218 Query: 266 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298 + + +R++++ +LNLT+RQ+KIWFQNRRMK KK Sbjct: 219 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251 >gi|24497536 homeobox C13 [Homo sapiens] Length = 330 Score = 82.8 bits (203), Expect = 4e-16 Identities = 39/64 (60%), Positives = 51/64 (79%) Query: 236 SSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMK 295 SS +R RKKR PYTK Q++ELE+E+ S +I KEKR ++S NL++RQV IWFQNRR+K Sbjct: 255 SSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVK 314 Query: 296 EKKI 299 EKK+ Sbjct: 315 EKKV 318 >gi|24497554 homeobox A13 [Homo sapiens] Length = 388 Score = 82.4 bits (202), Expect = 5e-16 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 6/92 (6%) Query: 210 KERRRRPE--SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYIN 267 KE+ + P S+ P+ S H D SS +R RKKR PYTK Q++ELERE+ + +I Sbjct: 293 KEQAQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 348 Query: 268 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 299 K+KR ++S NL++RQV IWFQNRR+KEKK+ Sbjct: 349 KDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380 Score = 45.1 bits (105), Expect = 8e-05 Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 96 APSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLA 155 A +AA A + + HP A + +S A P LA Sbjct: 39 AAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLA 98 Query: 156 SSDYPGDKSAE-KGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRR 214 SA + PP+A A +AAAAAAA A A SSS G G AA + Sbjct: 99 PGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSA 158 Query: 215 RPESSSSP 222 +SSS P Sbjct: 159 AAQSSSGP 166 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/46 (39%), Positives = 23/46 (50%) Query: 162 DKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAA 207 +K+ E AA A +AAAAA A G + + GG AAAA Sbjct: 32 NKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAA 77 >gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] Length = 254 Score = 82.0 bits (201), Expect = 6e-16 Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 13/136 (9%) Query: 164 SAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPE 223 S G TS+ TG P G TA E+K RRR ESS + E Sbjct: 107 SGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGS------TANETEKKSSRRRKESSDNQE 160 Query: 224 SSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDR 283 + K GSS + RK+R +TK Q+RELE EF Y+ + +R +++ L+L++R Sbjct: 161 NRG-----KPEGSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSER 213 Query: 284 QVKIWFQNRRMKEKKI 299 QVK+WFQNRRMK K++ Sbjct: 214 QVKVWFQNRRMKWKRV 229 >gi|84105335 mesenchyme homeobox 2 [Homo sapiens] Length = 304 Score = 81.6 bits (200), Expect = 8e-16 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 9/142 (6%) Query: 158 DYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPE 217 D G PP + S++ ++ A + D G R+ + AE ++R Sbjct: 113 DSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYG-----RQALSPAEAEKRSGGKR 167 Query: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277 S S +S G+ + + + RK+R +TK QIRELE EF Y+ + +R +++ Sbjct: 168 KSDSSDSQEGNYKSEVNS----KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVN 223 Query: 278 LNLTDRQVKIWFQNRRMKEKKI 299 L+LT+RQVK+WFQNRRMK K++ Sbjct: 224 LDLTERQVKVWFQNRRMKWKRV 245 >gi|27804315 homeobox C12 [Homo sapiens] Length = 282 Score = 81.6 bits (200), Expect = 8e-16 Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 28/167 (16%) Query: 161 GDKSAEKG-PPAATATSAAAAAAATGAPATSSS-DSGGGGGCRETAAAAEEKERRRRPES 218 G K E+G P A +A +G PA D GGG + A +S Sbjct: 106 GLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQS 165 Query: 219 SSSPESSSGHTEDKAGGSSGQ--------------------------RTRKKRCPYTKYQ 252 S SSS E G +G R+RKKR PY+K Q Sbjct: 166 LESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQ 225 Query: 253 IRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 299 + ELE EF + +I +++R +LS LNL+D+QVKIWFQNRRMK+K++ Sbjct: 226 LAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272 >gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] Length = 139 Score = 81.3 bits (199), Expect = 1e-15 Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 13/125 (10%) Query: 175 TSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAG 234 TS+ TG P G TA E+K RRR ESS + E+ K Sbjct: 3 TSSLGLVDTTGGPGDDYGVLGS------TANETEKKSSRRRKESSDNQENRG-----KPE 51 Query: 235 GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 294 GSS + RK+R +TK Q+RELE EF Y+ + +R +++ L+L++RQVK+WFQNRRM Sbjct: 52 GSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRM 109 Query: 295 KEKKI 299 K K++ Sbjct: 110 KWKRV 114 >gi|24497513 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 80.1 bits (196), Expect = 2e-15 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Query: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKER--RRRPE 217 P A PP++ + A+ T A A S ++ +E + +++ Sbjct: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTS 171 Query: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277 SSSS ES +G SS ++ R YT Q+ ELE+EF F+ Y+ + +R++++ + Sbjct: 172 SSSSGESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 227 Query: 278 LNLTDRQVKIWFQNRRMKEKK 298 LNLT+RQ+KIWFQNRRMK KK Sbjct: 228 LNLTERQIKIWFQNRRMKYKK 248 Score = 30.4 bits (67), Expect = 2.1 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 96 APSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLA 155 AP+ A P A N ++PTPA ++ + V Q F E+ T + + Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTPANAAK-SPLLNSPTVAKQIFPWMKESRQNTKQKTS 171 Query: 156 SSDYPGDKSAEKGPPAATATSAAAAAAATGA 186 SS + +K PP A+S A A T A Sbjct: 172 SSSSGESCAGDKSPP-GQASSKRARTAYTSA 201 >gi|13562112 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 80.1 bits (196), Expect = 2e-15 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Query: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKER--RRRPE 217 P A PP++ + A+ T A A S ++ +E + +++ Sbjct: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTS 171 Query: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277 SSSS ES +G SS ++ R YT Q+ ELE+EF F+ Y+ + +R++++ + Sbjct: 172 SSSSGESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 227 Query: 278 LNLTDRQVKIWFQNRRMKEKK 298 LNLT+RQ+KIWFQNRRMK KK Sbjct: 228 LNLTERQIKIWFQNRRMKYKK 248 Score = 30.4 bits (67), Expect = 2.1 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 96 APSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLA 155 AP+ A P A N ++PTPA ++ + V Q F E+ T + + Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTPANAAK-SPLLNSPTVAKQIFPWMKESRQNTKQKTS 171 Query: 156 SSDYPGDKSAEKGPPAATATSAAAAAAATGA 186 SS + +K PP A+S A A T A Sbjct: 172 SSSSGESCAGDKSPP-GQASSKRARTAYTSA 201 >gi|116734702 homeobox D13 [Homo sapiens] Length = 343 Score = 80.1 bits (196), Expect = 2e-15 Identities = 36/61 (59%), Positives = 49/61 (80%) Query: 239 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298 +R RKKR PYTK Q++ELE E+ + +INK+KR ++S NL++RQV IWFQNRR+K+KK Sbjct: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333 Query: 299 I 299 I Sbjct: 334 I 334 Score = 33.9 bits (76), Expect = 0.19 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 162 DKSAEKGPPAATATSAAAAAAATG-------APATSSSDSG-GGGGCRETAAAAEEKERR 213 D G PA++++S+ AAAAA+G AP + + SG AAAA Sbjct: 15 DGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGF 74 Query: 214 RRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCP 247 P +S SSS + + + K CP Sbjct: 75 AYPGTSERTGSSSSSSSSAVVAARPEAPPAKECP 108 Score = 28.5 bits (62), Expect = 8.0 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 7/70 (10%) Query: 154 LASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERR 213 L++ + G S AA A +AAAAA+ P TS AA Sbjct: 44 LSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAA------ 97 Query: 214 RRPESSSSPE 223 RPE+ + E Sbjct: 98 -RPEAPPAKE 106 >gi|4504465 homeobox B2 [Homo sapiens] Length = 356 Score = 79.7 bits (195), Expect = 3e-15 Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 120 PAVSSNFYSTVGRNGVL---PQAFDQFFETAYGTPENLASSDYPGDKSAEKGP--PAATA 174 PAV F ++ + L P F+Q F + L K AE GP P Sbjct: 26 PAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPR--SQKRAEDGPALPPPPP 83 Query: 175 TSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAG 234 AA A P +++A + P +S+ P S G D G Sbjct: 84 PPLPAAPPAPEFPWMKE---------KKSAKKPSQSATSPSPAASAVPASGVGSPADGLG 134 Query: 235 --GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNR 292 + G R+ R YT Q+ ELE+EF F+ Y+ + +R++++ +L+LT+RQVK+WFQNR Sbjct: 135 LPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNR 194 Query: 293 RMKEKKINRDR 303 RMK K+ + R Sbjct: 195 RMKHKRQTQHR 205 >gi|121114296 caudal type homeobox 1 [Homo sapiens] Length = 265 Score = 79.0 bits (193), Expect = 5e-15 Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 18/169 (10%) Query: 146 TAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSG--------GG 197 TA+G P D+ PAA+ S A +P + G GG Sbjct: 59 TAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGG 118 Query: 198 GGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKK-RCPYTKYQIREL 256 G + A +R P ++G GGS RT+ K R YT +Q EL Sbjct: 119 PGTPSSPGA-----QRPTPYEWMRRSVAAGG----GGGSGKTRTKDKYRVVYTDHQRLEL 169 Query: 257 EREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQ 305 E+EF +S YI ++ +L+ L LT+RQVKIWFQNRR KE+K+N+ + Q Sbjct: 170 EKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQ 218 >gi|169636435 caudal type homeobox 2 [Homo sapiens] Length = 313 Score = 78.6 bits (192), Expect = 7e-15 Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 7/158 (4%) Query: 149 GTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAE 208 G+P P D P AAA + A+G T + G + Sbjct: 99 GSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSP 158 Query: 209 EKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKK-RCPYTKYQIRELEREFFFSVYIN 267 +RR E P S G RT+ K R YT +Q ELE+EF +S YI Sbjct: 159 GGQRRNLCEWMRKPAQQS------LGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 212 Query: 268 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQ 305 ++ +L+ L L++RQVKIWFQNRR KE+KIN+ +LQ Sbjct: 213 IRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQ 250 >gi|24497515 homeobox A3 isoform b [Homo sapiens] Length = 285 Score = 78.2 bits (191), Expect = 9e-15 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 4/86 (4%) Query: 213 RRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRL 272 +++ SSSS ES +G SS ++ R YT Q+ ELE+EF F+ Y+ + +R+ Sbjct: 9 KQKTSSSSSGESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRV 64 Query: 273 QLSRMLNLTDRQVKIWFQNRRMKEKK 298 +++ +LNLT+RQ+KIWFQNRRMK KK Sbjct: 65 EMANLLNLTERQIKIWFQNRRMKYKK 90 >gi|13273317 homeobox B8 [Homo sapiens] Length = 243 Score = 77.8 bits (190), Expect = 1e-14 Identities = 61/211 (28%), Positives = 88/211 (41%), Gaps = 32/211 (15%) Query: 92 DCLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTP 151 DC A G P V SS + HP+ FY P + +G P Sbjct: 25 DCGFAQDLGGRPTVVYGPSSGGSFQHPSQI--QEFYHGPSSLSTAPYQQNPCAVACHGDP 82 Query: 152 ENLASSDYPGDKS--AEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEE 209 N D +S + P AAA+ G E A +E+ Sbjct: 83 GNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAAS---------------GLGEEAEGSEQ 127 Query: 210 KERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKE 269 + P++++G R+ R Y++YQ ELE+EF F+ Y+ ++ Sbjct: 128 SPSPTQLFPWMRPQAAAGR-------------RRGRQTYSRYQTLELEKEFLFNPYLTRK 174 Query: 270 KRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN 300 +R+++S L LT+RQVKIWFQNRRMK KK N Sbjct: 175 RRIEVSHALGLTERQVKIWFQNRRMKWKKEN 205 >gi|13489077 homeobox A6 [Homo sapiens] Length = 233 Score = 77.4 bits (189), Expect = 2e-14 Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 23/109 (21%) Query: 216 PESSSSPESSSG-----HTEDK------------------AGGSSGQRTRKKRCPYTKYQ 252 PE P+SSSG H E AG G R+ R YT+YQ Sbjct: 107 PEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQ 166 Query: 253 IRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301 ELE+EF F+ Y+ + +R++++ L LT+RQ+KIWFQNRRMK KK N+ Sbjct: 167 TLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.312 0.127 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,980,699 Number of Sequences: 37866 Number of extensions: 737909 Number of successful extensions: 9314 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 469 Number of HSP's successfully gapped in prelim test: 343 Number of HSP's that attempted gapping in prelim test: 6132 Number of HSP's gapped (non-prelim): 2591 length of query: 313 length of database: 18,247,518 effective HSP length: 102 effective length of query: 211 effective length of database: 14,385,186 effective search space: 3035274246 effective search space used: 3035274246 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.