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Search of human proteins with 49574546
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49574546 runt-related transcription factor 1 isoform AML1b
[Homo sapiens]
(453 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49574546 runt-related transcription factor 1 isoform AML1b [H... 920 0.0
gi|19923198 runt-related transcription factor 1 isoform AML1c [H... 911 0.0
gi|226442791 runt-related transcription factor 2 isoform b [Homo... 577 e-165
gi|66934969 runt-related transcription factor 2 isoform c [Homo ... 575 e-164
gi|226442783 runt-related transcription factor 2 isoform a [Homo... 565 e-161
gi|169790837 runt-related transcription factor 1 isoform AML1a [... 488 e-138
gi|4757918 runt-related transcription factor 3 isoform 2 [Homo s... 486 e-137
gi|72534652 runt-related transcription factor 3 isoform 1 [Homo ... 476 e-134
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 50 3e-06
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 50 3e-06
gi|28558973 mediator complex subunit 14 [Homo sapiens] 46 6e-05
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 42 0.001
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 42 0.001
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 42 0.001
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 41 0.003
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 41 0.003
gi|55750053 atrophin-1 [Homo sapiens] 41 0.003
gi|55750041 atrophin-1 [Homo sapiens] 41 0.003
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 40 0.003
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 39 0.010
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 39 0.013
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 39 0.013
gi|116284392 mucin 2 precursor [Homo sapiens] 38 0.017
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 38 0.017
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 37 0.028
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap... 37 0.028
gi|45827755 transforming, acidic coiled-coil containing protein ... 37 0.028
gi|13376611 zinc finger protein 703 [Homo sapiens] 37 0.037
gi|193083129 MAP/microtubule affinity-regulating kinase 3 isofor... 37 0.037
gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform... 37 0.037
>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
sapiens]
Length = 453
Score = 920 bits (2379), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60
MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG
Sbjct: 1 MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60
Query: 61 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120
ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA
Sbjct: 61 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120
Query: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180
TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR
Sbjct: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180
Query: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240
QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM
Sbjct: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240
Query: 241 QDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDL 300
QDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDL
Sbjct: 241 QDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDL 300
Query: 301 TAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPG 360
TAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPG
Sbjct: 301 TAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPG 360
Query: 361 SSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLP 420
SSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLP
Sbjct: 361 SSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLP 420
Query: 421 NQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 453
NQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY
Sbjct: 421 NQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 453
>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
sapiens]
Length = 480
Score = 911 bits (2354), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Query: 6 DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 65
DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT
Sbjct: 33 DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 92
Query: 66 DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 125
DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK
Sbjct: 93 DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 152
Query: 126 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 185
NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD
Sbjct: 153 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 212
Query: 186 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 245
QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ
Sbjct: 213 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 272
Query: 246 IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD 305
IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD
Sbjct: 273 IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD 332
Query: 306 PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ 365
PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ
Sbjct: 333 PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ 392
Query: 366 GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV 425
GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV
Sbjct: 393 GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV 452
Query: 426 VEAEGSHSNSPTNMAPSARLEEAVWRPY 453
VEAEGSHSNSPTNMAPSARLEEAVWRPY
Sbjct: 453 VEAEGSHSNSPTNMAPSARLEEAVWRPY 480
>gi|226442791 runt-related transcription factor 2 isoform b [Homo
sapiens]
Length = 499
Score = 577 bits (1488), Expect = e-165
Identities = 307/493 (62%), Positives = 363/493 (73%), Gaps = 58/493 (11%)
Query: 6 DASTSRRFTPPSTALSPGKMSEALPL---------------------------------- 31
D STSRRF+PPS++L PGKMS+ P+
Sbjct: 20 DPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAA 79
Query: 32 -GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIA 88
A A AA +LR +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNKTLP+A
Sbjct: 80 AAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVA 139
Query: 89 FKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTL 148
FKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTL
Sbjct: 140 FKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTL 199
Query: 149 TITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTA 208
TITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP FS+RLS+L ++ +
Sbjct: 200 TITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGRIPHPS 256
Query: 209 MRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQMQDTRQIQPSPPWSYDQSY-QYLGSIAS 266
MRV P NPR SLN + + FNPQ QSQ+ D RQ Q SPPWSYDQSY YL + S
Sbjct: 257 MRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYLSQMTS 312
Query: 267 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSI-----SDPRMH 321
PS+H TP+S R +G+ ++ ++ R+S A +L FSDPRQFP++ S+ S+PRMH
Sbjct: 313 PSIHSTTPLSSTRGTGLPAIT-DVPRRISGASELGPFSDPRQFPSISSLTESRFSNPRMH 371
Query: 322 YPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG 381
YP FTY+P PVTSG+ +GMSA T YHTYLPPPYPGSSQ+Q GPFQ SS Y LYYG
Sbjct: 372 YPATFTYTP-PVTSGMSLGMSA---TTHYHTYLPPPYPGSSQSQSGPFQTSSTPY-LYYG 426
Query: 382 ASAGSYQFSMV-GGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMA 440
S+GSYQF MV GG+RSP R+LPPCT S GS LLNP+LPNQ+D V+A+GSHS+SPT +
Sbjct: 427 TSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLN 486
Query: 441 PSARLEEAVWRPY 453
S R++E+VWRPY
Sbjct: 487 SSGRMDESVWRPY 499
>gi|66934969 runt-related transcription factor 2 isoform c [Homo
sapiens]
Length = 507
Score = 575 bits (1481), Expect = e-164
Identities = 312/520 (60%), Positives = 368/520 (70%), Gaps = 80/520 (15%)
Query: 1 MRIPVDASTSRRFTPPSTALSPGKMSEALPL----------------------------- 31
MRIPVD STSRRF+PPS++L PGKMS+ P+
Sbjct: 1 MRIPVDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAA 60
Query: 32 ------GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNK 83
A A AA +LR +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNK
Sbjct: 61 AAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNK 120
Query: 84 TLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRG 143
TLP+AFKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRG
Sbjct: 121 TLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRG 180
Query: 144 KSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQ 203
KSFTLTITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP FS+RLS+L +
Sbjct: 181 KSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGR 237
Query: 204 LRRTAMRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQMQDTRQIQPSPPWSYDQSY-QYL 261
+ +MRV P NPR SLN + + FNPQ QSQ+ D RQ Q SPPWSYDQSY YL
Sbjct: 238 IPHPSMRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYL 293
Query: 262 GSIASPSVHPATPISPGRASGMTTLSAELSSRLST----------------------APD 299
+ SPS+H TP+S R +G+ ++ ++ R+S A +
Sbjct: 294 SQMTSPSIHSTTPLSSTRGTGLPAIT-DVPRRISDDDTATSDFCLWPSTLSKKSQAGASE 352
Query: 300 LTAFSDPRQFPALPSI-----SDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYL 354
L FSDPRQFP++ S+ S+PRMHYP FTY+P PVTSG+ +GMSA T YHTYL
Sbjct: 353 LGPFSDPRQFPSISSLTESRFSNPRMHYPATFTYTP-PVTSGMSLGMSA---TTHYHTYL 408
Query: 355 PPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-GGERSPPRILPPCTNASTGSA 413
PPPYPGSSQ+Q GPFQ SS Y LYYG S+GSYQF MV GG+RSP R+LPPCT S GS
Sbjct: 409 PPPYPGSSQSQSGPFQTSSTPY-LYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGST 467
Query: 414 LLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 453
LLNP+LPNQ+D V+A+GSHS+SPT + S R++E+VWRPY
Sbjct: 468 LLNPNLPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY 507
>gi|226442783 runt-related transcription factor 2 isoform a [Homo
sapiens]
Length = 521
Score = 565 bits (1456), Expect = e-161
Identities = 307/515 (59%), Positives = 363/515 (70%), Gaps = 80/515 (15%)
Query: 6 DASTSRRFTPPSTALSPGKMSEALPL---------------------------------- 31
D STSRRF+PPS++L PGKMS+ P+
Sbjct: 20 DPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAA 79
Query: 32 -GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIA 88
A A AA +LR +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNKTLP+A
Sbjct: 80 AAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVA 139
Query: 89 FKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTL 148
FKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTL
Sbjct: 140 FKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTL 199
Query: 149 TITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTA 208
TITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP FS+RLS+L ++ +
Sbjct: 200 TITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGRIPHPS 256
Query: 209 MRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQMQDTRQIQPSPPWSYDQSY-QYLGSIAS 266
MRV P NPR SLN + + FNPQ QSQ+ D RQ Q SPPWSYDQSY YL + S
Sbjct: 257 MRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYLSQMTS 312
Query: 267 PSVHPATPISPGRASGMTTLSAELSSRLST----------------------APDLTAFS 304
PS+H TP+S R +G+ ++ ++ R+S A +L FS
Sbjct: 313 PSIHSTTPLSSTRGTGLPAIT-DVPRRISDDDTATSDFCLWPSTLSKKSQAGASELGPFS 371
Query: 305 DPRQFPALPSI-----SDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYP 359
DPRQFP++ S+ S+PRMHYP FTY+P PVTSG+ +GMSA T YHTYLPPPYP
Sbjct: 372 DPRQFPSISSLTESRFSNPRMHYPATFTYTP-PVTSGMSLGMSA---TTHYHTYLPPPYP 427
Query: 360 GSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-GGERSPPRILPPCTNASTGSALLNPS 418
GSSQ+Q GPFQ SS Y LYYG S+GSYQF MV GG+RSP R+LPPCT S GS LLNP+
Sbjct: 428 GSSQSQSGPFQTSSTPY-LYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPN 486
Query: 419 LPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 453
LPNQ+D V+A+GSHS+SPT + S R++E+VWRPY
Sbjct: 487 LPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY 521
>gi|169790837 runt-related transcription factor 1 isoform AML1a
[Homo sapiens]
Length = 250
Score = 488 bits (1257), Expect = e-138
Identities = 243/252 (96%), Positives = 246/252 (97%), Gaps = 4/252 (1%)
Query: 1 MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60
MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG
Sbjct: 1 MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60
Query: 61 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120
ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA
Sbjct: 61 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120
Query: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180
TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR
Sbjct: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180
Query: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240
QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM
Sbjct: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240
Query: 241 QDTRQIQPSPPW 252
Q+ + + PW
Sbjct: 241 QE----EDTAPW 248
>gi|4757918 runt-related transcription factor 3 isoform 2 [Homo
sapiens]
Length = 415
Score = 486 bits (1251), Expect = e-137
Identities = 275/472 (58%), Positives = 321/472 (68%), Gaps = 76/472 (16%)
Query: 1 MRIPVDASTSRRFTPPSTAL----SPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLA 56
MRIPVD STSRRFTPPS A GKM E + A G+ R RSMV+VLA
Sbjct: 1 MRIPVDPSTSRRFTPPSPAFPCGGGGGKMGENSGALSAQAAVGPGGRARPEVRSMVDVLA 60
Query: 57 DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAE 116
DH GELVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALGDVPDGT+VTVMAGNDENYSAE
Sbjct: 61 DHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAE 120
Query: 117 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREP 176
LRNA+A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNP QVATYHRAIK+TVDGPREP
Sbjct: 121 LRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREP 180
Query: 177 RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQP 236
RRHRQKL+DQTKP F +R +LE+LR MRV+P TP+PR SL+ ++ F+ QP
Sbjct: 181 RRHRQKLEDQTKP----FPDRFGDLERLR---MRVTP----STPSPRGSLSTTSHFSSQP 229
Query: 237 QSQMQDTRQIQP-SPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLS 295
Q+ +Q T ++ P S P +D+S+
Sbjct: 230 QTPIQGTSELNPFSDPRQFDRSF------------------------------------P 253
Query: 296 TAPDLTAFSDPRQFPALPSISDPRMHYPG----AFTYSPTPV-TSGIGIGMSAMGSATRY 350
T P LT +FP DPRMHYPG AF YS TP TS + ++ M + +R+
Sbjct: 254 TLPTLT----ESRFP------DPRMHYPGAMSAAFPYSATPSGTSISSLSVAGMPATSRF 303
Query: 351 -HTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-----GGERSPPRILPP 404
HTYLPPPYPG+ Q Q GPFQA+ YHLYYG S+GSYQFSMV GG+RSP R+L
Sbjct: 304 HHTYLPPPYPGAPQNQSGPFQANPSPYHLYYGTSSGSYQFSMVAGSSSGGDRSPTRMLAS 363
Query: 405 CTNASTGSA---LLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 453
CT+++ A L+NPSL QSD VEA+GSHSNSPT ++ R++EAVWRPY
Sbjct: 364 CTSSAASVAAGNLMNPSLGGQSDGVEADGSHSNSPTALSTPGRMDEAVWRPY 415
>gi|72534652 runt-related transcription factor 3 isoform 1 [Homo
sapiens]
Length = 429
Score = 476 bits (1226), Expect = e-134
Identities = 270/467 (57%), Positives = 316/467 (67%), Gaps = 76/467 (16%)
Query: 6 DASTSRRFTPPSTAL----SPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGE 61
D STSRRFTPPS A GKM E + A G+ R RSMV+VLADH GE
Sbjct: 20 DPSTSRRFTPPSPAFPCGGGGGKMGENSGALSAQAAVGPGGRARPEVRSMVDVLADHAGE 79
Query: 62 LVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNAT 121
LVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALGDVPDGT+VTVMAGNDENYSAELRNA+
Sbjct: 80 LVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNAS 139
Query: 122 AAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ 181
A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNP QVATYHRAIK+TVDGPREPRRHRQ
Sbjct: 140 AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPRRHRQ 199
Query: 182 KLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ 241
KL+DQTKP F +R +LE+LR MRV+P TP+PR SL+ ++ F+ QPQ+ +Q
Sbjct: 200 KLEDQTKP----FPDRFGDLERLR---MRVTP----STPSPRGSLSTTSHFSSQPQTPIQ 248
Query: 242 DTRQIQP-SPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDL 300
T ++ P S P +D+S+ T P L
Sbjct: 249 GTSELNPFSDPRQFDRSF------------------------------------PTLPTL 272
Query: 301 TAFSDPRQFPALPSISDPRMHYPG----AFTYSPTPV-TSGIGIGMSAMGSATRY-HTYL 354
T +FP DPRMHYPG AF YS TP TS + ++ M + +R+ HTYL
Sbjct: 273 T----ESRFP------DPRMHYPGAMSAAFPYSATPSGTSISSLSVAGMPATSRFHHTYL 322
Query: 355 PPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-----GGERSPPRILPPCTNAS 409
PPPYPG+ Q Q GPFQA+ YHLYYG S+GSYQFSMV GG+RSP R+L CT+++
Sbjct: 323 PPPYPGAPQNQSGPFQANPSPYHLYYGTSSGSYQFSMVAGSSSGGDRSPTRMLASCTSSA 382
Query: 410 TGSA---LLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 453
A L+NPSL QSD VEA+GSHSNSPT ++ R++EAVWRPY
Sbjct: 383 ASVAAGNLMNPSLGGQSDGVEADGSHSNSPTALSTPGRMDEAVWRPY 429
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 50.4 bits (119), Expect = 3e-06
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 213 PHHPAPTPNPRASLNHSTAFNPQPQSQM-QDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 271
P PAP+ +L+ A+ PQPQSQ Q T Q P + S GS AS
Sbjct: 565 PQQPAPS-----TLSQQAAY-PQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS----- 613
Query: 272 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 331
+ P G ++ L SR S+ PDL+ SI D M GA SP
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSG-----------SIDDLPMGTEGAL--SPG 660
Query: 332 PVTSGIGI--GMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQF 389
TSGI G + + + + + P PG GP + S + +G
Sbjct: 661 VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIR----GPSPSPVGSPASVAQSRSGPLSP 716
Query: 390 SMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSP 436
+ V G + PPR PP + ++++PS+ NQS + + G +P
Sbjct: 717 AAVPGNQMPPR--PP---SGQSDSIMHPSM-NQSSIAQDRGYMQRNP 757
Score = 30.4 bits (67), Expect = 3.4
Identities = 48/202 (23%), Positives = 70/202 (34%), Gaps = 20/202 (9%)
Query: 232 FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELS 291
F+P + R PSP S Q SP+ P + P SG + S
Sbjct: 681 FSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS 740
Query: 292 SRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYH 351
S+ + ++ P +P S P+ PG+ P I G MGS +
Sbjct: 741 MNQSSIAQDRGYM--QRNPQMPQYSSPQ---PGSALSPRQPSGGQIHTG---MGSYQQNS 792
Query: 352 TYLPPPYPGSSQAQGG----PFQASSPSYHLYYGASAGSYQFSMVGGER------SPPRI 401
P G QGG P + P+ + AG GG+ P
Sbjct: 793 MGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGT 852
Query: 402 LPP--CTNASTGSALLNPSLPN 421
LPP ++AS G+ P++ N
Sbjct: 853 LPPGRMSHASMGNRPYGPNMAN 874
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 50.4 bits (119), Expect = 3e-06
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 213 PHHPAPTPNPRASLNHSTAFNPQPQSQM-QDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 271
P PAP+ +L+ A+ PQPQSQ Q T Q P + S GS AS
Sbjct: 565 PQQPAPS-----TLSQQAAY-PQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS----- 613
Query: 272 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 331
+ P G ++ L SR S+ PDL+ SI D M GA SP
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSG-----------SIDDLPMGTEGAL--SPG 660
Query: 332 PVTSGIGI--GMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQF 389
TSGI G + + + + + P PG GP + S + +G
Sbjct: 661 VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIR----GPSPSPVGSPASVAQSRSGPLSP 716
Query: 390 SMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSP 436
+ V G + PPR PP + ++++PS+ NQS + + G +P
Sbjct: 717 AAVPGNQMPPR--PP---SGQSDSIMHPSM-NQSSIAQDRGYMQRNP 757
Score = 30.4 bits (67), Expect = 3.4
Identities = 48/202 (23%), Positives = 70/202 (34%), Gaps = 20/202 (9%)
Query: 232 FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELS 291
F+P + R PSP S Q SP+ P + P SG + S
Sbjct: 681 FSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS 740
Query: 292 SRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYH 351
S+ + ++ P +P S P+ PG+ P I G MGS +
Sbjct: 741 MNQSSIAQDRGYM--QRNPQMPQYSSPQ---PGSALSPRQPSGGQIHTG---MGSYQQNS 792
Query: 352 TYLPPPYPGSSQAQGG----PFQASSPSYHLYYGASAGSYQFSMVGGER------SPPRI 401
P G QGG P + P+ + AG GG+ P
Sbjct: 793 MGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGT 852
Query: 402 LPP--CTNASTGSALLNPSLPN 421
LPP ++AS G+ P++ N
Sbjct: 853 LPPGRMSHASMGNRPYGPNMAN 874
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 46.2 bits (108), Expect = 6e-05
Identities = 57/236 (24%), Positives = 84/236 (35%), Gaps = 24/236 (10%)
Query: 218 PTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISP 277
P P + LN N + + + PSP D + + P P P
Sbjct: 955 PAPGLKTFLNMFVDSNQDARRRSVNEDDNPPSPIGG-DMMDSLISQLQPPPQQQPFPKQP 1013
Query: 278 GRASG--MTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDP-RMHYPGAFTYSPTPVT 334
G + +T+ S ++ +P + P A S S R P +F +P P +
Sbjct: 1014 GTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSS 1073
Query: 335 SGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGG 394
GI IG A S H L P P+ SPS AG++ S
Sbjct: 1074 HGISIGPGA--SFASPHGTLDP---------SSPYTMVSPS------GRAGNWPGSPQVS 1116
Query: 395 ERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVW 450
SP +P + A+ L+ +P+ S A S PTNM P +L + W
Sbjct: 1117 GPSPAARMPGMSPANPS---LHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQRSW 1169
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 200 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 249
+ +Q+ RT + ++ P AP P PR + S A Q + QPS
Sbjct: 463 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 522
Query: 250 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 296
PP + + S ++PS +S SG TT S +L S +T
Sbjct: 523 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 580
Query: 297 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 351
AP TA S P +S P G T P+PV +S + SA+ +
Sbjct: 581 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 640
Query: 352 TYLPPPYPGSSQAQGGPFQASSP 374
PPP PG+ +A G + SP
Sbjct: 641 GDSPPPAPGTPKANGSQPNSGSP 663
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 200 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 249
+ +Q+ RT + ++ P AP P PR + S A Q + QPS
Sbjct: 473 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 532
Query: 250 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 296
PP + + S ++PS +S SG TT S +L S +T
Sbjct: 533 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 590
Query: 297 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 351
AP TA S P +S P G T P+PV +S + SA+ +
Sbjct: 591 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 650
Query: 352 TYLPPPYPGSSQAQGGPFQASSP 374
PPP PG+ +A G + SP
Sbjct: 651 GDSPPPAPGTPKANGSQPNSGSP 673
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 200 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 249
+ +Q+ RT + ++ P AP P PR + S A Q + QPS
Sbjct: 473 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 532
Query: 250 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 296
PP + + S ++PS +S SG TT S +L S +T
Sbjct: 533 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 590
Query: 297 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 351
AP TA S P +S P G T P+PV +S + SA+ +
Sbjct: 591 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 650
Query: 352 TYLPPPYPGSSQAQGGPFQASSP 374
PPP PG+ +A G + SP
Sbjct: 651 GDSPPPAPGTPKANGSQPNSGSP 673
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 189 PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFN-PQPQSQMQDTRQIQ 247
P S +E L+Q ++ PAP+P+P P P + Q+
Sbjct: 698 PSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLS 757
Query: 248 PSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTL----SAELSSRLSTAPDLTAF 303
P+PP +++ Q+ G + P V P P+SP + + L S+ L RLS++P T
Sbjct: 758 PAPP-GEEETSQWPGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKT-M 815
Query: 304 SDPRQFPALPSISDPRM 320
+ F + P + P++
Sbjct: 816 PTTQSFASDPKYATPQV 832
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 189 PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFN-PQPQSQMQDTRQIQ 247
P S +E L+Q ++ PAP+P+P P P + Q+
Sbjct: 776 PSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLS 835
Query: 248 PSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTL----SAELSSRLSTAPDLTAF 303
P+PP +++ Q+ G + P V P P+SP + + L S+ L RLS++P T
Sbjct: 836 PAPP-GEEETSQWPGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKT-M 893
Query: 304 SDPRQFPALPSISDPRM 320
+ F + P + P++
Sbjct: 894 PTTQSFASDPKYATPQV 910
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 32/239 (13%)
Query: 208 AMRVSPHHPAPTPNPRASLNHSTAFN---PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI 264
++R P PA P P + +++S A P S + Q S P S+ Q G
Sbjct: 538 SLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQ 595
Query: 265 ASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG 324
+P P P +TT SA LS+ ++T A P P R PG
Sbjct: 596 GAPYPFPPVPT-------VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPG 647
Query: 325 AFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQG-GPFQASSPSYHLYYGAS 383
A+ + P GS + T PP Y G+S G G F+ SP +
Sbjct: 648 AYKTATPPGYKP--------GSPPSFRTGTPPGYRGTSPPAGPGTFKPGSP--------T 691
Query: 384 AGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPS 442
G G P LPP A L+ + Q E E S P +PS
Sbjct: 692 VGPGPLPPAGPSGLPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Score = 34.3 bits (77), Expect = 0.24
Identities = 58/230 (25%), Positives = 83/230 (36%), Gaps = 36/230 (15%)
Query: 208 AMRVSPHHPAPTPNPRA-SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 266
A + P +P P P + S+++ QP Q P PP Y + +A+
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL------LAN 454
Query: 267 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY---- 322
+ HP P P + T +ST +Q + H+
Sbjct: 455 SNAHPG-PFPPSTGAQSTA-----HPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508
Query: 323 ---PGAFTYSPTPVTSGIG-----IGMS-AMGSATRYH---TYLPPPYPGSSQAQGGP-F 369
PGAF P P+ G MS ++GS Y +LPPP+ S +Q GP
Sbjct: 509 PPPPGAF---PHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG 565
Query: 370 QASSPSYHLYYGASAGSYQFSMVGGERSP---PRILPPCTNASTGSALLN 416
S S + S GSY S + P P PP +T SA L+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 32/239 (13%)
Query: 208 AMRVSPHHPAPTPNPRASLNHSTAFN---PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI 264
++R P PA P P + +++S A P S + Q S P S+ Q G
Sbjct: 538 SLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQ 595
Query: 265 ASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG 324
+P P P +TT SA LS+ ++T A P P R PG
Sbjct: 596 GAPYPFPPVPT-------VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPG 647
Query: 325 AFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQG-GPFQASSPSYHLYYGAS 383
A+ + P GS + T PP Y G+S G G F+ SP +
Sbjct: 648 AYKTATPPGYKP--------GSPPSFRTGTPPGYRGTSPPAGPGTFKPGSP--------T 691
Query: 384 AGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPS 442
G G P LPP A L+ + Q E E S P +PS
Sbjct: 692 VGPGPLPPAGPSGLPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Score = 34.3 bits (77), Expect = 0.24
Identities = 58/230 (25%), Positives = 83/230 (36%), Gaps = 36/230 (15%)
Query: 208 AMRVSPHHPAPTPNPRA-SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 266
A + P +P P P + S+++ QP Q P PP Y + +A+
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL------LAN 454
Query: 267 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY---- 322
+ HP P P + T +ST +Q + H+
Sbjct: 455 SNAHPG-PFPPSTGAQSTA-----HPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508
Query: 323 ---PGAFTYSPTPVTSGIG-----IGMS-AMGSATRYH---TYLPPPYPGSSQAQGGP-F 369
PGAF P P+ G MS ++GS Y +LPPP+ S +Q GP
Sbjct: 509 PPPPGAF---PHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG 565
Query: 370 QASSPSYHLYYGASAGSYQFSMVGGERSP---PRILPPCTNASTGSALLN 416
S S + S GSY S + P P PP +T SA L+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 40.4 bits (93), Expect = 0.003
Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 25/222 (11%)
Query: 207 TAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 266
T+ SP P+ +P + S +++P S + P+ P S Y S S
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTS 1689
Query: 267 PSVHPATP----ISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY 322
PS P +P SP + + S S T+P + S P P PS S +Y
Sbjct: 1690 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPNY 1748
Query: 323 -PGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG 381
P + Y+PT S ++ Y P P S + +SPSY
Sbjct: 1749 SPTSPNYTPT--------SPSYSPTSPSYSPTSPNYTPTSPN-----YSPTSPSY----S 1791
Query: 382 ASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQS 423
++ SY + S PR P + S +PS P+ S
Sbjct: 1792 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYS 1833
Score = 38.5 bits (88), Expect = 0.013
Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 22/193 (11%)
Query: 207 TAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI-- 264
T+ SP P TP S +++P S + PS P QS Y S
Sbjct: 1765 TSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 1824
Query: 265 ---ASPSVHPA----TPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISD 317
+SPS P TP SP + + T+P + S P+ P P+ S
Sbjct: 1825 YSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTS-PKYSPTSPTYSP 1883
Query: 318 PRMHY-PGAFTYSPT-PVTSGIGIGMSAMG-----SATRYH----TYLPPPYPGSSQAQG 366
Y P + TYSPT PV + S ++ +Y TY P GS+ +
Sbjct: 1884 TTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT 1943
Query: 367 GP-FQASSPSYHL 378
P + +SP+Y L
Sbjct: 1944 SPGYSPTSPTYSL 1956
Score = 31.2 bits (69), Expect = 2.0
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 36/185 (19%)
Query: 266 SPSVHP----ATPI----SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISD 317
SP++ P ATP SP SGMT +A S S A D + FS P PA
Sbjct: 1514 SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSP--SAASDASGFS-PGYSPA------ 1564
Query: 318 PRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYH 377
+SPTP + GS Y+P P S + A P
Sbjct: 1565 ----------WSPTP---------GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP 1605
Query: 378 LYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPT 437
Y + SY + + P P N S S +P+ P+ S + S S +
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 438 NMAPS 442
+PS
Sbjct: 1666 PTSPS 1670
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 38.9 bits (89), Expect = 0.010
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Query: 208 AMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ--IQPSPPWSYDQSYQYLGSIA 265
A RV + AP P P ++ + P Q Q Q T+Q + S P Q+Y
Sbjct: 888 ASRVGFQNIAPKPLPSQQVSSTVVQQPIQQPQ-QPTQQSVVIVSQPAQQGQTY------- 939
Query: 266 SPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGA 325
+P++H +P L A + +L+ P++T S P PA + P A
Sbjct: 940 APAIHQIVLANPA------ALPAGQTVQLTGQPNITPSSSPSPVPATNN------QVPTA 987
Query: 326 FTYSPTPVTSGIGIGMSAMGSATR----YHTYLPPPYPGSSQAQ 365
+ S TP + G +S M S R H+ PPP Q Q
Sbjct: 988 MSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQ 1031
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 38.5 bits (88), Expect = 0.013
Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 197 RLSELEQL--RRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSY 254
R S+L Q R + VSP A P SLN +T P S QD Q QPSP +S+
Sbjct: 615 RSSQLMQSSGRSGSSLVSPFSSATAALP-PSLNLTT-----PASTSQDASQCQPSPDFSH 668
Query: 255 DQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSR-LSTAPDLTAFSDPRQFPA 311
D+ + L S P P+ PG + R + A T F +P PA
Sbjct: 669 DRQLRLLLS------QPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPA 720
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 38.5 bits (88), Expect = 0.013
Identities = 48/191 (25%), Positives = 59/191 (30%), Gaps = 16/191 (8%)
Query: 213 PHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASP--SVH 270
P P P P P QP Q +Q P P + Q +Q P S
Sbjct: 56 PKPPIPPPPPHQQ-------QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSK 108
Query: 271 PATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSP 330
P PG A G+ + SS P T+ + P P P + P
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPP-TSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Query: 331 TPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQ--AQGGPFQASSPSYHLYYGASAGSYQ 388
TP +SG+ G +P P PG Q GGP P G
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG----GPKPGGGPG 223
Query: 389 FSMVGGERSPP 399
S GG PP
Sbjct: 224 LSTPGGHPKPP 234
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 38.1 bits (87), Expect = 0.017
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 216 PAPTPNPRASLNHSTA----FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 271
P PT P ++ +T P P + PSPP + + + + P+ P
Sbjct: 1448 PPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTP 1507
Query: 272 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 331
TP + TT + ++ +T P T S P P P S + P T SP
Sbjct: 1508 ITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTL--PPTTTPSPP 1565
Query: 332 PVTS 335
P T+
Sbjct: 1566 PTTT 1569
Score = 34.3 bits (77), Expect = 0.24
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 218 PTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI-----ASPSVHPA 272
PT A + T NP P+S T + SP +S L ++ + + P+
Sbjct: 4198 PTHTSTAPIAELTTSNPPPESSTPQTSRSTSSP---LTESTTLLSTLPPAIEMTSTAPPS 4254
Query: 273 TPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTP 332
TP +P SG TLS S+ S P + P+ S + A+T +PTP
Sbjct: 4255 TPTAPTTTSGGHTLSPPPSTTTS-PPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTP 4313
Query: 333 VTS 335
+++
Sbjct: 4314 LST 4316
Score = 31.2 bits (69), Expect = 2.0
Identities = 51/229 (22%), Positives = 75/229 (32%), Gaps = 17/229 (7%)
Query: 216 PAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI 275
P P +L +T +P P + PSPP + S + + P P T
Sbjct: 1546 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPP---PTTTP 1602
Query: 276 SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTS 335
SP TT + + + P T + P LP + P P T +P P T+
Sbjct: 1603 SP----PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSP--PPTTTTTPPPTTT 1656
Query: 336 GIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGE 395
+ T PP SS P SP S + S +
Sbjct: 1657 PSPPTTTTPSPPITTTTTPPPTTTPSSPITTTP----SPPTTTMTTPSPTTTPSSPITTT 1712
Query: 396 RSPPRIL---PPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAP 441
+P PP T +T S PS P + + + ++SP P
Sbjct: 1713 TTPSSTTTPSPPPTTMTTPSPTTTPS-PPTTTMTTLPPTTTSSPLTTTP 1760
Score = 30.8 bits (68), Expect = 2.6
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 219 TPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPG 278
TP+P +T +P P S PSPP + + P+ P+ PI+
Sbjct: 1398 TPSPP-----TTTPSPPPTSTTTLPPTTTPSPPTTTTTT-------PPPTTTPSPPITTT 1445
Query: 279 RASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTS 335
TT + S +T P T S P P+ P+ + P T +P P T+
Sbjct: 1446 TTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSP---PTTTTTTPPPTTT 1499
Score = 30.8 bits (68), Expect = 2.6
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 21/133 (15%)
Query: 216 PAPTPNPRASLNHS----TAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 271
P TP+P + S T P P + PSPP + + + +SP
Sbjct: 1653 PTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTT 1712
Query: 272 ATPISPGRAS---------GMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY 322
TP S S TT + ++ ++T P T S P PSI+ P
Sbjct: 1713 TTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPP---- 1768
Query: 323 PGAFTYSPTPVTS 335
T+SP T+
Sbjct: 1769 ----TFSPFSTTT 1777
Score = 29.3 bits (64), Expect = 7.7
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 216 PAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI 275
P+P P +L +T +P + PSPP + + P+ P+ PI
Sbjct: 1406 PSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPIT-------TTTTPPPTTTPSPPI 1458
Query: 276 SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALP---SISDPRMHYPGAFTYSP-T 331
S TT + +P T S P P+ P + + P P T +P T
Sbjct: 1459 STTTTPPPTT---------TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPIT 1509
Query: 332 PVTSGIGIGMSAMGSATRYHTYLPPP 357
P S + + S T PPP
Sbjct: 1510 PPASTTTLPPTTTPSPPTTTTTTPPP 1535
Score = 29.3 bits (64), Expect = 7.7
Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 2/124 (1%)
Query: 213 PHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ--IQPSPPWSYDQSYQYLGSIASPSVH 270
P TP P + + T P P + T PSPP + + + + P+
Sbjct: 1565 PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTT 1624
Query: 271 PATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSP 330
P TP + TT + + +T P T S P P I+ P SP
Sbjct: 1625 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP 1684
Query: 331 TPVT 334
T
Sbjct: 1685 ITTT 1688
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 38.1 bits (87), Expect = 0.017
Identities = 48/169 (28%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 222 PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRAS 281
P ASL + QP + + + QPS Y G +ASPS A S G
Sbjct: 253 PSASLG--VGYRTQPMTAQAASYRAQPS----VSLGAPYRGQLASPSSQSAAASSLGPYG 306
Query: 282 GMTTLSAELSS---RLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIG 338
G ++ LSS + + A L ++ Q +L S + Y GA S G
Sbjct: 307 GAQPSASALSSYGGQAAAASSLNSYG--AQGSSLASYGNQPSSY-GA------QAASSYG 357
Query: 339 IGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSY 387
+ +A+ Y+T GS AQ + A S + L YGA A SY
Sbjct: 358 V----RAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASY 402
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 37.4 bits (85), Expect = 0.028
Identities = 50/180 (27%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 217 APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPA 272
AP P PR + S A Q + QPSPP + + S ++PS
Sbjct: 486 APQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPT--KFIVMSSSSSAPSTQQV 543
Query: 273 TPISPGR-ASGMTTLS------------AELSSRLSTAPDLTAFSDPRQFPALPSIS-DP 318
+S SG TT S +L S +TAP TA S P +S P
Sbjct: 544 LSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPP 603
Query: 319 RMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSP 374
G T P+PV +S + SA+ + PPP PG+ +A G + SP
Sbjct: 604 TGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSP 663
>gi|32171215 CREB regulated transcription coactivator 2 [Homo
sapiens]
Length = 693
Score = 37.4 bits (85), Expect = 0.028
Identities = 62/260 (23%), Positives = 94/260 (36%), Gaps = 65/260 (25%)
Query: 214 HHPAPTPNPRASLNHST--AFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 271
H P P+ ++SL++ A PQ Q+Q + P S + S+ PS+
Sbjct: 335 HSPLSHPSLQSSLSNPNLQASLSSPQPQLQGSHSHPSLPASSLARHVLPTTSLGHPSL-- 392
Query: 272 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPS--ISDP------RMHYP 323
+ P +S +T S L + A A R+ P P ++ P + P
Sbjct: 393 SAPALSSSSSSSSTSSPVLGAPSYPASTPGASPHHRRVPLSPLSLLAGPADARRSQQQLP 452
Query: 324 GAF--TYSPT--PVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLY 379
F T SPT +T G+ + S + + R PPYP SS
Sbjct: 453 KQFSPTMSPTLSSITQGVPLDTSKLSTDQRL-----PPYPYSS----------------- 490
Query: 380 YGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEG-------SH 432
P +LP T T +L P LP+QS V++ G SH
Sbjct: 491 ------------------PSLVLP--TQPHTPKSLQQPGLPSQSCSVQSSGGQPPGRQSH 530
Query: 433 SNSPTNMAPSARLEEAVWRP 452
+P PS +++ RP
Sbjct: 531 YGTPYPPGPSGHGQQSYHRP 550
>gi|45827755 transforming, acidic coiled-coil containing protein 2
isoform b [Homo sapiens]
Length = 1094
Score = 37.4 bits (85), Expect = 0.028
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 29/187 (15%)
Query: 219 TPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI--- 275
T + + +L+ T + QP Q+ ++ Q P S D +A + PA P
Sbjct: 7 TSDNQRTLSAQTPRSAQPPGNSQNIKRKQQDTPGSPDHRDASSSPVADDIIQPAAPADLE 66
Query: 276 SPGRASG----------MTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGA 325
SP A+ T L A+ SS A + + P + P P P +
Sbjct: 67 SPTLAASSYHGDVVGQVSTDLIAQRSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPE 126
Query: 326 FTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG---- 381
+ P P G G T P P S +G PF+ S S+ +
Sbjct: 127 VSTQPPPEEPGCG-----------SETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKP 175
Query: 382 -ASAGSY 387
AS+G+Y
Sbjct: 176 IASSGTY 182
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 37.0 bits (84), Expect = 0.037
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 287 SAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGS 346
S R +T+ +L S R ALP YPGA SG+G +A +
Sbjct: 464 SGPCDKRFATSEEL--LSHLRTHTALPGAEKLLAAYPGA---------SGLGSAAAAAAA 512
Query: 347 ATRYHTYLPPP-YPGS--SQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSP 398
A H +LPPP PGS S + P YH Y G S GG P
Sbjct: 513 AASCHLHLPPPAAPGSPGSLSLRNPHTLGLSRYHPY-----GKSHLSTAGGLAVP 562
>gi|193083129 MAP/microtubule affinity-regulating kinase 3 isoform d
[Homo sapiens]
Length = 713
Score = 37.0 bits (84), Expect = 0.037
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 22/91 (24%)
Query: 217 APTPN----PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSV-HP 271
A TP+ PR + + ST F+ QP+ + T Y G ASPS+ H
Sbjct: 531 AATPDRIRFPRGTASRST-FHGQPRERRTAT----------------YNGPPASPSLSHE 573
Query: 272 ATPISPGRASGMTTLSAELSSRLSTAPDLTA 302
ATP+S R+ G T L ++L+S+L+ + +++A
Sbjct: 574 ATPLSQTRSRGSTNLFSKLTSKLTRSRNVSA 604
>gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform c
[Homo sapiens]
Length = 729
Score = 37.0 bits (84), Expect = 0.037
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 22/91 (24%)
Query: 217 APTPN----PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSV-HP 271
A TP+ PR + + ST F+ QP+ + T Y G ASPS+ H
Sbjct: 547 AATPDRIRFPRGTASRST-FHGQPRERRTAT----------------YNGPPASPSLSHE 589
Query: 272 ATPISPGRASGMTTLSAELSSRLSTAPDLTA 302
ATP+S R+ G T L ++L+S+L+ + +++A
Sbjct: 590 ATPLSQTRSRGSTNLFSKLTSKLTRSRNVSA 620
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,815,760
Number of Sequences: 37866
Number of extensions: 1132171
Number of successful extensions: 4337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 4016
Number of HSP's gapped (non-prelim): 496
length of query: 453
length of database: 18,247,518
effective HSP length: 106
effective length of query: 347
effective length of database: 14,233,722
effective search space: 4939101534
effective search space used: 4939101534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.