Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 49355807
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49355807 leucine zipper, down-regulated in cancer 1-like
[Homo sapiens]
(239 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom... 471 e-133
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 87 1e-17
gi|118200333 family with sequence similarity 127, member B isofo... 80 1e-15
gi|118200335 family with sequence similarity 127, member A [Homo... 80 2e-15
gi|239757911 PREDICTED: similar to Family with sequence similari... 79 3e-15
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi... 79 3e-15
gi|118200337 family with sequence similarity 127, member C [Homo... 79 5e-15
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens] 63 2e-10
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 63 2e-10
gi|126157477 hypothetical protein LOC79680 [Homo sapiens] 59 3e-09
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 43 2e-04
gi|199562283 retrotransposon-like 1 [Homo sapiens] 40 0.002
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 40 0.002
gi|55741645 archaelysin family metallopeptidase 1 [Homo sapiens] 32 0.49
gi|226442783 runt-related transcription factor 2 isoform a [Homo... 32 0.64
gi|66934969 runt-related transcription factor 2 isoform c [Homo ... 32 0.64
gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens] 32 0.64
gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens] 32 0.64
gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens] 32 0.64
gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens] 31 0.83
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 31 0.83
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 30 1.4
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 30 1.4
gi|197245393 family with sequence similarity 127, member B isofo... 30 1.4
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 30 1.8
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 30 1.8
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 30 1.8
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 30 1.8
gi|38348206 Ras and Rab interactor-like [Homo sapiens] 30 1.8
gi|6754638 microtubule-associated protein tau isoform 2 [Homo sa... 30 2.4
>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
sapiens]
Length = 239
Score = 471 bits (1211), Expect = e-133
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV 60
MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV
Sbjct: 1 MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV 60
Query: 61 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMD 120
MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMD
Sbjct: 61 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMD 120
Query: 121 RFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSP 180
RFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSP
Sbjct: 121 RFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSP 180
Query: 181 LRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL 239
LRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL
Sbjct: 181 LRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL 239
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 87.0 bits (214), Expect = 1e-17
Identities = 56/125 (44%), Positives = 70/125 (56%), Gaps = 8/125 (6%)
Query: 74 PGALQITPPISSITSNGTRPMTTPPTSLPE-----PFSGDPGRLAGFLMQMDRFMIFQAS 128
P L I PP + P PP + E PFSGDP LA FLMQ++ F+
Sbjct: 120 PPLLPIPPPPALPPPASKEPPPQPPLAPLERPEIEPFSGDPVYLAEFLMQLETFIADHEV 179
Query: 129 RFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPL--RHARR 186
FPG AERVAFL+S TGEA+ WAI Q SPL N+ FL E+R+ + P+ R A++
Sbjct: 180 HFPGGAERVAFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKK 239
Query: 187 AQIRK 191
A IRK
Sbjct: 240 A-IRK 243
>gi|118200333 family with sequence similarity 127, member B isoform
1 [Homo sapiens]
Length = 113
Score = 80.5 bits (197), Expect = 1e-15
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
P PE F GD RL F++Q +M + F +A +V FL++RLTG A +W IP+++
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
Query: 158 PDSPLRNNYQGFLAELRRTY 177
+SPL N+Y+GFLAE++R +
Sbjct: 86 KESPLLNDYRGFLAEMKRVF 105
>gi|118200335 family with sequence similarity 127, member A [Homo
sapiens]
Length = 113
Score = 80.1 bits (196), Expect = 2e-15
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
P PE F GD RL F++Q +M + F +A +V FL++RLTG A +W IP+++
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIK 85
Query: 158 PDSPLRNNYQGFLAELRRTY 177
+SPL N+Y+GFLAE++R +
Sbjct: 86 KESPLLNDYRGFLAEMKRVF 105
>gi|239757911 PREDICTED: similar to Family with sequence similarity
127, member B [Homo sapiens]
Length = 113
Score = 79.3 bits (194), Expect = 3e-15
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
P PE F GD RL F++Q +M + F +A +V FL++RLTG A +W IP+++
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
Query: 158 PDSPLRNNYQGFLAELRRTY 177
+SPL N+Y+GFLAE++R +
Sbjct: 86 KESPLLNDYRGFLAEMKRVF 105
>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
sapiens]
Length = 146
Score = 79.0 bits (193), Expect = 3e-15
Identities = 33/80 (41%), Positives = 55/80 (68%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
P PE F+G+ RL F++Q +M+ +RF +A +VAFL+S LTGEAE+W +P+++
Sbjct: 50 PVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIE 109
Query: 158 PDSPLRNNYQGFLAELRRTY 177
DSP+ +Y+ FL E+++ +
Sbjct: 110 MDSPILGDYRAFLDEMKQCF 129
>gi|118200337 family with sequence similarity 127, member C [Homo
sapiens]
Length = 113
Score = 78.6 bits (192), Expect = 5e-15
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
P PE F GD RL F++Q +M + F +A +V FL++RLTG A +W IP+++
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIK 85
Query: 158 PDSPLRNNYQGFLAELRRTY 177
+SPL ++Y+GFLAE++R +
Sbjct: 86 KESPLLSDYRGFLAEMKRVF 105
>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
Length = 325
Score = 63.2 bits (152), Expect = 2e-10
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 39 LRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISS--ITSNGTRPMTT 96
LR + E NL + ++ + E T LR + ++ TP I G
Sbjct: 16 LREKVMKQSEENNNLQSQVQKLTEENTTLREQ------VEPTPEDEDDDIELRGAAAAAA 69
Query: 97 PPT--------SLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEA 148
PP LPE F G+P LA F+ Q FM F + RV F+ S +TG A
Sbjct: 70 PPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRA 129
Query: 149 EKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPLR 182
+WA ++ L +NY F+ E++ ++ P R
Sbjct: 130 ARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQR 163
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 63.2 bits (152), Expect = 2e-10
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 39 LRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISS--ITSNGTRPMTT 96
LR + E NL + ++ + E T LR + ++ TP I G
Sbjct: 16 LREKVMKQSEENNNLQSQVQKLTEENTTLREQ------VEPTPEDEDDDIELRGAAAAAA 69
Query: 97 PPT--------SLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEA 148
PP LPE F G+P LA F+ Q FM F + RV F+ S +TG A
Sbjct: 70 PPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRA 129
Query: 149 EKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPLR 182
+WA ++ L +NY F+ E++ ++ P R
Sbjct: 130 ARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQR 163
>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
Length = 364
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
P S P F G P L FL Q+ +M F + RV ++ RLTG A+ WA P++
Sbjct: 100 PGSDPGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLD 159
Query: 158 PDSPLRNNYQGFLAELRRTYKSP 180
D PL ++Y+ F +L+ + P
Sbjct: 160 GDLPLPDDYELFCQDLKEVVQDP 182
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 105 FSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRN 164
FSGD +L FL+Q+ +M + +P EA V+F+ + +G A W + SPL
Sbjct: 244 FSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLDIQSPLLE 303
Query: 165 NYQGFLAELRRTYKSP 180
+ F+ L+ T+ +P
Sbjct: 304 QCESFIPVLQDTFDNP 319
>gi|199562283 retrotransposon-like 1 [Homo sapiens]
Length = 1358
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 102 PEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSP 161
P+ FSGD F++ + F + RV ++++ L+G A +WA +Q +SP
Sbjct: 203 PKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSP 262
Query: 162 LRNNYQGFLAELRRT--YKSPLRHARRA 187
L ++ FL + Y+ LR A A
Sbjct: 263 LIGDFPAFLEAMSEVFEYRQALRVAEEA 290
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 85 SITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLM-----------------------QMDR 121
+IT++G++P + + PE P + F M +M+
Sbjct: 1111 NITASGSKPTSHMTATTPETAKPPPKEVPSFGMLTPALCYLLEEQEAARGSCSVEEEMEI 1170
Query: 122 FMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKS 179
Q F ++ER+AFLVS G AE+W I M+ PL + + FL + Y S
Sbjct: 1171 DEEKQMKGFLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIYDS 1228
>gi|55741645 archaelysin family metallopeptidase 1 [Homo sapiens]
Length = 498
Score = 32.0 bits (71), Expect = 0.49
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 11/156 (7%)
Query: 74 PGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFP-- 131
P + TPP S+ + + P TS+ EP + D G + AS P
Sbjct: 337 PSVWEDTPPASADSGMCCESDSEPGTSVSEPLTPDAGSHTFASGPEEGLSYLAASEAPLP 396
Query: 132 --GEAERV-------AFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPLR 182
G AE + A + L E + + + + ++ F +L T + P
Sbjct: 397 PGGPAEAIKEHERWLAMCIQALQREVAEEDLVQVDRAVDALDRWEMFTGQLPATRQDPPS 456
Query: 183 HARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCP 218
+RK + R++ R+LA A + P P
Sbjct: 457 SRDSVGLRKVLGDKFSSLRRKLSARKLARAESAPRP 492
>gi|226442783 runt-related transcription factor 2 isoform a [Homo
sapiens]
Length = 521
Score = 31.6 bits (70), Expect = 0.64
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 12 PALAASPNAQMDDVIDTLTS-LRLTNSALRREASTLRAEKANLTNMLE----SVMAELTL 66
PA+ P DD DT TS L S L +++ +E ++ + S + E
Sbjct: 330 PAITDVPRRISDD--DTATSDFCLWPSTLSKKSQAGASELGPFSDPRQFPSISSLTESRF 387
Query: 67 LRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAG 114
R P TPP++S S G T T LP P+ G +G
Sbjct: 388 SNPRMHYPATFTYTPPVTSGMSLGMSATTHYHTYLPPPYPGSSQSQSG 435
>gi|66934969 runt-related transcription factor 2 isoform c [Homo
sapiens]
Length = 507
Score = 31.6 bits (70), Expect = 0.64
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 12 PALAASPNAQMDDVIDTLTS-LRLTNSALRREASTLRAEKANLTNMLE----SVMAELTL 66
PA+ P DD DT TS L S L +++ +E ++ + S + E
Sbjct: 316 PAITDVPRRISDD--DTATSDFCLWPSTLSKKSQAGASELGPFSDPRQFPSISSLTESRF 373
Query: 67 LRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAG 114
R P TPP++S S G T T LP P+ G +G
Sbjct: 374 SNPRMHYPATFTYTPPVTSGMSLGMSATTHYHTYLPPPYPGSSQSQSG 421
>gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens]
Length = 643
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 154 PHMQPDSPLRNNYQGFLAELRRTYKSPLRHARRAQIRKTSASNRA 198
P M+P P+ N Y+ LA+ K R R TS+S RA
Sbjct: 585 PRMKPQEPIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERA 629
>gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens]
Length = 571
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 154 PHMQPDSPLRNNYQGFLAELRRTYKSPLRHARRAQIRKTSASNRA 198
P M+P P+ N Y+ LA+ K R R TS+S RA
Sbjct: 513 PRMKPQEPIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERA 557
>gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens]
Length = 571
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 154 PHMQPDSPLRNNYQGFLAELRRTYKSPLRHARRAQIRKTSASNRA 198
P M+P P+ N Y+ LA+ K R R TS+S RA
Sbjct: 513 PRMKPQEPIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERA 557
>gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens]
Length = 310
Score = 31.2 bits (69), Expect = 0.83
Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 35 TNSALRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISSITSNGTRPM 94
++S ++ E S L+AE L ++ E T R + +P P+ + T+
Sbjct: 7 SSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQV-MPALATTVMPVPYSLEHLTQ-- 63
Query: 95 TTPPTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIP 154
F GDP + FL Q+ ++ P ++ L+ + E I
Sbjct: 64 ----------FHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGII 113
Query: 155 HMQPDSPLRNNYQGFLAELRRTYKSPLR 182
S L Y+ + E ++++ P +
Sbjct: 114 SGPDKSTLLKQYENLILEFQQSFGKPTK 141
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.2 bits (69), Expect = 0.83
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 39 LRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISSIT----SNGTRPM 94
LR EA +R K+ + ++ + +L L + PG L++TPP+ S+T S RP
Sbjct: 3069 LRLEAEGMRGRKSGGSMVVAVIQDDLDLADSG---PGGLELTPPVVSLTPKLRSTRLRPG 3125
Query: 95 TTPP----TSLPE-----PFSGDPG 110
+ P LP P G PG
Sbjct: 3126 SLVPPLETEKLPRKRAGAPVGGSPG 3150
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 34 LTNSALRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISSITSNGTRP 93
L AL+ ++LR+ + N T + ++ ++ +L + + G+LQ T S S+ R
Sbjct: 1950 LPKIALQGSWASLRSPRVNCTLLRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRR 2009
Query: 94 MTTPPTSLPEPFSG 107
PP P P +G
Sbjct: 2010 ALGPPAPAPGPRAG 2023
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 34 LTNSALRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISSITSNGTRP 93
L AL+ ++LR+ + N T + ++ ++ +L + + G+LQ T S S+ R
Sbjct: 1985 LPKIALQGSWASLRSPRVNCTLLRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRR 2044
Query: 94 MTTPPTSLPEPFSG 107
PP P P +G
Sbjct: 2045 ALGPPAPAPGPRAG 2058
>gi|197245393 family with sequence similarity 127, member B isoform
2 [Homo sapiens]
Length = 83
Score = 30.4 bits (67), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEA 134
P PE F GD RL F++Q +M + F +A
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDA 62
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 4 PQTSKAESPALA---ASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV 60
P+ KA P LA ASP T+ N L + + + E+A LE
Sbjct: 500 PRGQKASPPTLAPATASPP----------TTAGSNNPCLTQLLTAAKPEQA-----LEPP 544
Query: 61 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGR 111
+ TLLR+ PG+ Q T P T P TPP P P + P R
Sbjct: 545 LVSSTLLRS----PGSPQETVPEFPCTFLPPTPAPTPPRPPPGPATLAPSR 591
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 4 PQTSKAESPALA---ASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV 60
P+ KA P LA ASP T+ N L + + + E+A LE
Sbjct: 500 PRGQKASPPTLAPATASPP----------TTAGSNNPCLTQLLTAAKPEQA-----LEPP 544
Query: 61 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGR 111
+ TLLR+ PG+ Q T P T P TPP P P + P R
Sbjct: 545 LVSSTLLRS----PGSPQETVPEFPCTFLPPTPAPTPPRPPPGPATLAPSR 591
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 4 PQTSKAESPALA---ASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV 60
P+ KA P LA ASP T+ N L + + + E+A LE
Sbjct: 500 PRGQKASPPTLAPATASPP----------TTAGSNNPCLTQLLTAAKPEQA-----LEPP 544
Query: 61 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGR 111
+ TLLR+ PG+ Q T P T P TPP P P + P R
Sbjct: 545 LVSSTLLRS----PGSPQETVPEFPCTFLPPTPAPTPPRPPPGPATLAPSR 591
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 4 PQTSKAESPALA---ASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV 60
P+ KA P LA ASP T+ N L + + + E+A LE
Sbjct: 500 PRGQKASPPTLAPATASPP----------TTAGSNNPCLTQLLTAAKPEQA-----LEPP 544
Query: 61 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGR 111
+ TLLR+ PG+ Q T P T P TPP P P + P R
Sbjct: 545 LVSSTLLRS----PGSPQETVPEFPCTFLPPTPAPTPPRPPPGPATLAPSR 591
>gi|38348206 Ras and Rab interactor-like [Homo sapiens]
Length = 452
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 167 QGFLAELRRTYKSPLRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVH-PASNG 225
Q LA L+ + LR R ++R+ +R RQ R AG GP P G
Sbjct: 237 QAVLAPLKPALWTRLRTLRAPELRR-------LRRRQTALR----AGAGPPGAQGPGPEG 285
Query: 226 TSPAPALPAR 235
SPAPAL +R
Sbjct: 286 QSPAPALRSR 295
>gi|6754638 microtubule-associated protein tau isoform 2 [Homo
sapiens]
Length = 441
Score = 29.6 bits (65), Expect = 2.4
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 81 PPISSITSNGTR-PMTTPPTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAF 139
PP +N TR P TPP P SG+P + + + PG R
Sbjct: 159 PPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSG----DRSGYSSPGSPGTPGSRSRTPS 214
Query: 140 LVSRLTGEAEKWAIPHMQPDSP 161
L + T E +K A+ P SP
Sbjct: 215 LPTPPTREPKKVAVVRTPPKSP 236
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,383,994
Number of Sequences: 37866
Number of extensions: 426102
Number of successful extensions: 2472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2406
Number of HSP's gapped (non-prelim): 122
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.