Guide to the Human Genome
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Name: FAM127B Sequence: fasta or formatted (83aa) NCBI GI: 197245393
Description:

family with sequence similarity 127, member B isoform 2

Referenced in:

NF-kappaB Pathway

Other entries for this name:
alt prot [113aa] family with sequence similarity 127, member B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6          8           2
 C cysteine            1.2          1           1
 D aspartate           8.4          7           1
 E glutamate           3.6          3           1
 F phenylalanine       6.0          5           1
 G glycine             4.8          4           1
 H histidine           1.2          1           1
 I isoleucine          6.0          5           1
 K lysine              2.4          2           1
 L leucine             7.2          6           2
 M methionine          3.6          3           1
 N asparagine          3.6          3           1
 P proline             8.4          7           1
 Q glutamine           2.4          2           1
 R arginine            8.4          7           2
 S serine              6.0          5           2
 T threonine           9.6          8           2
 V valine              3.6          3           1
 W tryptophan          1.2          1           1
 Y tyrosine            2.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 127, member B isofo... 
FAM127B               0.736   family with sequence similarity 127, member B isofo...
LOC100292719          0.723   PREDICTED: similar to Family with sequence similari...
FAM127C               0.709   family with sequence similarity 127, member C [Homo...
FAM127A               0.662   family with sequence similarity 127, member A [Homo...
LDOC1                 0.284   leucine zipper, down-regulated in cancer 1 
ZCCHC5                0.081   zinc finger, CCHC domain containing 5 
PEG10                 0.041   paternally expressed 10 isoform RF1 
PEG10                 0.041   paternally expressed 10 isoform RF1/2 
LDOC1L                0.034   leucine zipper, down-regulated in cancer 1-like [Hom...
AP3D1                 0.014   adaptor-related protein complex 3, delta 1 subunit ...
AP3D1                 0.014   adaptor-related protein complex 3, delta 1 subunit ...
KCNA10                0.014   potassium voltage-gated channel, shaker-related subfa...
KCNA4                 0.007   potassium voltage-gated channel, shaker-related subfa...
KCNA3                 0.007   potassium voltage-gated channel, shaker-related subf...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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