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Search of human proteins with 4885395
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885395 theta 1 globin [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885395 theta 1 globin [Homo sapiens] 281 1e-76
gi|4504347 alpha 1 globin [Homo sapiens] 179 7e-46
gi|4504345 alpha 2 globin [Homo sapiens] 179 7e-46
gi|4885397 hemoglobin, zeta [Homo sapiens] 148 1e-36
gi|51510893 hemoglobin mu chain [Homo sapiens] 112 1e-25
gi|6715607 G-gamma globin [Homo sapiens] 95 2e-20
gi|4504351 delta globin [Homo sapiens] 95 2e-20
gi|4504349 beta globin [Homo sapiens] 94 4e-20
gi|28302131 A-gamma globin [Homo sapiens] 94 4e-20
gi|4885393 epsilon globin [Homo sapiens] 94 5e-20
gi|19549331 cytoglobin [Homo sapiens] 67 4e-12
gi|44955888 myoglobin [Homo sapiens] 52 2e-07
gi|44955885 myoglobin [Homo sapiens] 52 2e-07
gi|4885477 myoglobin [Homo sapiens] 52 2e-07
gi|5453844 TAF6-like RNA polymerase II [Homo sapiens] 37 0.007
gi|10864065 neuroglobin [Homo sapiens] 32 0.23
gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo ... 30 0.52
gi|119372312 galactosidase, beta 1 isoform b [Homo sapiens] 28 3.3
gi|119372308 galactosidase, beta 1 isoform a preproprotein [Homo... 28 3.3
gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo ... 28 3.3
gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo ... 28 3.3
gi|28372525 bactericidal/permeability-increasing protein-like 3 ... 27 4.4
gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo... 27 4.4
gi|110347427 ubiquitin specific protease 34 [Homo sapiens] 27 5.7
gi|239757402 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens] 26 9.7
gi|239751887 PREDICTED: hypothetical protein XP_002348022 [Homo ... 26 9.7
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 26 9.7
gi|239746377 PREDICTED: hypothetical protein XP_002343700 [Homo ... 26 9.7
gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens] 26 9.7
>gi|4885395 theta 1 globin [Homo sapiens]
Length = 142
Score = 281 bits (719), Expect = 1e-76
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60
MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
Sbjct: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60
Query: 61 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120
QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
Sbjct: 61 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120
Query: 121 ALQASLDKFLSHVISALVSEYR 142
ALQASLDKFLSHVISALVSEYR
Sbjct: 121 ALQASLDKFLSHVISALVSEYR 142
>gi|4504347 alpha 1 globin [Homo sapiens]
Length = 142
Score = 179 bits (454), Expect = 7e-46
Identities = 88/142 (61%), Positives = 110/142 (77%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60
M LS D+ V+A W K+G++ G Y EALER FL+FP TKTYF H DLS GS+QV+ HG
Sbjct: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
Query: 61 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120
+KVADAL+ AV +DD+P+ALSALS LHA +LRVDP +F+LL HCLLVTLA H P +F+P
Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
Query: 121 ALQASLDKFLSHVISALVSEYR 142
A+ ASLDKFL+ V + L S+YR
Sbjct: 121 AVHASLDKFLASVSTVLTSKYR 142
>gi|4504345 alpha 2 globin [Homo sapiens]
Length = 142
Score = 179 bits (454), Expect = 7e-46
Identities = 88/142 (61%), Positives = 110/142 (77%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60
M LS D+ V+A W K+G++ G Y EALER FL+FP TKTYF H DLS GS+QV+ HG
Sbjct: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
Query: 61 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120
+KVADAL+ AV +DD+P+ALSALS LHA +LRVDP +F+LL HCLLVTLA H P +F+P
Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
Query: 121 ALQASLDKFLSHVISALVSEYR 142
A+ ASLDKFL+ V + L S+YR
Sbjct: 121 AVHASLDKFLASVSTVLTSKYR 142
>gi|4885397 hemoglobin, zeta [Homo sapiens]
Length = 142
Score = 148 bits (374), Expect = 1e-36
Identities = 74/142 (52%), Positives = 96/142 (67%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60
M+L+ +R ++ ++W K+ + TE LER FL+ P TKTYF H DL PGS+Q+RAHG
Sbjct: 1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60
Query: 61 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120
KV A+ AV+ +DD+ ALS LS LHA LRVDP +F+LL HCLLVTLA +P DF+
Sbjct: 61 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120
Query: 121 ALQASLDKFLSHVISALVSEYR 142
A+ DKFLS V S L +YR
Sbjct: 121 EAHAAWDKFLSVVSSVLTEKYR 142
>gi|51510893 hemoglobin mu chain [Homo sapiens]
Length = 141
Score = 112 bits (280), Expect = 1e-25
Identities = 58/140 (41%), Positives = 85/140 (60%)
Query: 3 LSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQK 62
LSA++RA + +W + + + E L R F +P+TK YF HL ++Q+ +HGQ+
Sbjct: 2 LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHGQR 61
Query: 63 VADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPAL 122
+ A+ AV+ +D+L ALS L+ LHA LRVDPA+F LL C V LA H +F+ +
Sbjct: 62 MLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTVQM 121
Query: 123 QASLDKFLSHVISALVSEYR 142
QA+ DKFL+ V L +YR
Sbjct: 122 QAAWDKFLTGVAVVLTEKYR 141
>gi|6715607 G-gamma globin [Homo sapiens]
Length = 147
Score = 95.1 bits (235), Expect = 2e-20
Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 8/142 (5%)
Query: 6 EDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF------SHLDLSPGSSQVRAH 59
ED+A + +LW K+ NV E L R + +P T+ +F S G+ +V+AH
Sbjct: 7 EDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAH 64
Query: 60 GQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFS 119
G+KV +L A++ LDDL + LS LH +L VDP +F+LLG+ L+ LA H+ +F+
Sbjct: 65 GKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFT 124
Query: 120 PALQASLDKFLSHVISALVSEY 141
P +QAS K ++ V SAL S Y
Sbjct: 125 PEVQASWQKMVTGVASALSSRY 146
>gi|4504351 delta globin [Homo sapiens]
Length = 147
Score = 95.1 bits (235), Expect = 2e-20
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Query: 3 LSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHL-DLSP-----GSSQV 56
L+ E++ V ALW K+ NV EAL R + +P T+ +F DLS G+ +V
Sbjct: 4 LTPEEKTAVNALWGKV--NVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPKV 61
Query: 57 RAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPG 116
+AHG+KV A S + LD+L S LS LH +L VDP +F+LLG+ L+ LAR++
Sbjct: 62 KAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGK 121
Query: 117 DFSPALQASLDKFLSHVISALVSEY 141
+F+P +QA+ K ++ V +AL +Y
Sbjct: 122 EFTPQMQAAYQKVVAGVANALAHKY 146
>gi|4504349 beta globin [Homo sapiens]
Length = 147
Score = 94.0 bits (232), Expect = 4e-20
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Query: 3 LSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHL-DLSP-----GSSQV 56
L+ E+++ V ALW K+ NV EAL R + +P T+ +F DLS G+ +V
Sbjct: 4 LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKV 61
Query: 57 RAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPG 116
+AHG+KV A S + LD+L + LS LH +L VDP +F+LLG+ L+ LA H+
Sbjct: 62 KAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGK 121
Query: 117 DFSPALQASLDKFLSHVISALVSEY 141
+F+P +QA+ K ++ V +AL +Y
Sbjct: 122 EFTPPVQAAYQKVVAGVANALAHKY 146
>gi|28302131 A-gamma globin [Homo sapiens]
Length = 147
Score = 94.0 bits (232), Expect = 4e-20
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 8/142 (5%)
Query: 6 EDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF------SHLDLSPGSSQVRAH 59
ED+A + +LW K+ NV E L R + +P T+ +F S G+ +V+AH
Sbjct: 7 EDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAH 64
Query: 60 GQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFS 119
G+KV +L A + LDDL + LS LH +L VDP +F+LLG+ L+ LA H+ +F+
Sbjct: 65 GKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFT 124
Query: 120 PALQASLDKFLSHVISALVSEY 141
P +QAS K ++ V SAL S Y
Sbjct: 125 PEVQASWQKMVTAVASALSSRY 146
>gi|4885393 epsilon globin [Homo sapiens]
Length = 147
Score = 93.6 bits (231), Expect = 5e-20
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 4 SAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLD--LSP----GSSQVR 57
+AE++A V +LW K+ NV EAL R + +P T+ +F SP G+ +V+
Sbjct: 5 TAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62
Query: 58 AHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGD 117
AHG+KV + A++ +D+L A + LS LH +L VDP +F+LLG+ +++ LA H+ +
Sbjct: 63 AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122
Query: 118 FSPALQASLDKFLSHVISALVSEY 141
F+P +QA+ K +S V AL +Y
Sbjct: 123 FTPEVQAAWQKLVSAVAIALAHKY 146
>gi|19549331 cytoglobin [Homo sapiens]
Length = 190
Score = 67.4 bits (163), Expect = 4e-12
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 3 LSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFS---HLD---LSPGSSQV 56
LS +R V+A+W +L +N L R F+ FP+ K YFS H++ S Q+
Sbjct: 19 LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQL 78
Query: 57 RAHGQKVADALSLAVERLDD---LPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH 113
R H +V AL+ VE L D + L+ + HA + +V+P F++L +L +A
Sbjct: 79 RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEE 138
Query: 114 YPGDFSPALQASLDKFLSHVISALVSEYR 142
+ DF P Q + K + S + + Y+
Sbjct: 139 FASDFPPETQRAWAKLRGLIYSHVTAAYK 167
>gi|44955888 myoglobin [Homo sapiens]
Length = 154
Score = 52.0 bits (123), Expect = 2e-07
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFS---HL---DLSPGSS 54
M LS + LV +W K+ +++ + E L R F P T F HL D S
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 55 QVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHY 114
++ HG V AL +++ + L+ HA + ++ + + C++ L +
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 115 PGDFSPALQASLDKFLSHVISALVSEYR 142
PGDF Q +++K L + S Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
>gi|44955885 myoglobin [Homo sapiens]
Length = 154
Score = 52.0 bits (123), Expect = 2e-07
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFS---HL---DLSPGSS 54
M LS + LV +W K+ +++ + E L R F P T F HL D S
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 55 QVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHY 114
++ HG V AL +++ + L+ HA + ++ + + C++ L +
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 115 PGDFSPALQASLDKFLSHVISALVSEYR 142
PGDF Q +++K L + S Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
>gi|4885477 myoglobin [Homo sapiens]
Length = 154
Score = 52.0 bits (123), Expect = 2e-07
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFS---HL---DLSPGSS 54
M LS + LV +W K+ +++ + E L R F P T F HL D S
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 55 QVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHY 114
++ HG V AL +++ + L+ HA + ++ + + C++ L +
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 115 PGDFSPALQASLDKFLSHVISALVSEYR 142
PGDF Q +++K L + S Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
>gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
Length = 622
Score = 36.6 bits (83), Expect = 0.007
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 11 VRALWKKLGSNVGVYTT--EALERTFLAFPATKTYFSHL-----DLSPGSSQVRAHGQKV 63
VR L G+ VG++ +A+ER +P TY+++L D S ++QV+A G KV
Sbjct: 301 VRPLCCHYGAVVGLHALGWKAVERVL--YPHLSTYWTNLQAVLDDYSVSNAQVKADGHKV 358
Query: 64 ADALSLAVERL 74
A+ +AVERL
Sbjct: 359 YGAILVAVERL 369
>gi|10864065 neuroglobin [Homo sapiens]
Length = 151
Score = 31.6 bits (70), Expect = 0.23
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 63 VADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPAL 122
V DA VE L L L++L H + V +SF +G LL L + F+PA
Sbjct: 71 VIDAAVTNVEDLSSLEEYLASLGRKHRA-VGVKLSSFSTVGESLLYMLEKCLGPAFTPAT 129
Query: 123 QASLDKFLSHVISAL 137
+A+ + V+ A+
Sbjct: 130 RAAWSQLYGAVVQAM 144
>gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo
sapiens]
Length = 1014
Score = 30.4 bits (67), Expect = 0.52
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 8 RALVRALWKK---LGSNVGVYTTEALERTFLAFP----ATKTYFSHLDLSPGSSQVR-AH 59
R ++ALW + L + G YT L R+F + K H+ PGS R A
Sbjct: 669 RKCLQALWLREAQLEAAWGQYTKVLLVRSFREWRNLALQQKQVQPHMQAGPGSPPSRRAQ 728
Query: 60 GQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFS 119
G+ ++ S V+ P S L H LR + + +LL H T +RH
Sbjct: 729 GKGLSLGRSTVVD-----PAQRSRLEHTSPGSLREEEIAQRLLSHPRQRTDSRHERVQIL 783
Query: 120 PALQASL 126
ALQ ++
Sbjct: 784 QALQLAV 790
>gi|119372312 galactosidase, beta 1 isoform b [Homo sapiens]
Length = 647
Score = 27.7 bits (60), Expect = 3.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 8 RALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSS 54
R L + LG +V ++TT+ +TFL A + ++ +D GS+
Sbjct: 171 RFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSN 217
>gi|119372308 galactosidase, beta 1 isoform a preproprotein [Homo
sapiens]
Length = 677
Score = 27.7 bits (60), Expect = 3.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 8 RALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSS 54
R L + LG +V ++TT+ +TFL A + ++ +D GS+
Sbjct: 201 RFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSN 247
>gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo
sapiens]
Length = 1014
Score = 27.7 bits (60), Expect = 3.3
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 11 VRALWKK---LGSNVGVYTTEALERTFLAFP----ATKTYFSHLDLSPGSSQVR-AHGQK 62
++ALW + L + G YT L ++F + K H+ PGS R A G+
Sbjct: 672 LQALWLREAQLEAAWGQYTKVLLVQSFREWRNLALQQKQVQPHMQAGPGSPPSRRAQGKG 731
Query: 63 VADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPAL 122
++ S V+ P S L H LR + + +LL H T +RH AL
Sbjct: 732 LSLGRSTVVD-----PAQRSRLEHTSPGSLREEEIAQRLLSHPRQRTDSRHERVQILQAL 786
Query: 123 QASL 126
Q ++
Sbjct: 787 QLAV 790
>gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo
sapiens]
Length = 1014
Score = 27.7 bits (60), Expect = 3.3
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 11 VRALWKK---LGSNVGVYTTEALERTFLAFP----ATKTYFSHLDLSPGSSQVR-AHGQK 62
++ALW + L + G YT L ++F + K H+ PGS R A G+
Sbjct: 672 LQALWLREAQLEAAWGQYTKVLLVQSFREWRNLALQQKQVQPHMQAGPGSPPSRRAQGKG 731
Query: 63 VADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPAL 122
++ S V+ P S L H LR + + +LL H T +RH AL
Sbjct: 732 LSLGRSTVVD-----PAQRSRLEHTSPGSLREEEIAQRLLSHPRQRTDSRHERVQILQAL 786
Query: 123 QASL 126
Q ++
Sbjct: 787 QLAV 790
>gi|28372525 bactericidal/permeability-increasing protein-like 3
[Homo sapiens]
Length = 453
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 11 VRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADA 66
V W L + V ++ ++ PAT + LD SP Q + K+ADA
Sbjct: 184 VNRKWTNLSDPMPVGQMGTVKYVLMSAPATTASYIQLDFSPVVQQQKGKTIKLADA 239
>gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo
sapiens]
Length = 1321
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 54 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH 113
+QVR + ++ +A S+ L+ P ++ A HL CQ+ + +F + HCL + ++ +
Sbjct: 509 AQVRYYSGELENAQSILQRCLELDPASVDA--HLLMCQIYLAQGNFGMCFHCLELGVSHN 566
Query: 114 Y 114
+
Sbjct: 567 F 567
>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
Length = 3546
Score = 26.9 bits (58), Expect = 5.7
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 31 ERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHAC 90
ERTFL T+ +H L +V++ A+ +L + +L L +
Sbjct: 3224 ERTFLNNNIVYTFMTHFLL-----KVQSQVFSEANCANLISTLITNLISQYQNLQSDFSN 3278
Query: 91 QLRVDPASFQLLG--HCLLVTLARHYPGDFSPALQASLDKFLS 131
++ + AS L G L + L+ H P +PAL +L + LS
Sbjct: 3279 RVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQELLS 3321
>gi|239757402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 26.2 bits (56), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 34 FLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLR 93
F AFPA T S+VRA+ + A L + + PH AC LR
Sbjct: 102 FAAFPAPTTT---------RSRVRAYCLQPASVLRPHIHEVWSRPHPRRRTPPTRACALR 152
Query: 94 VDPASFQL 101
PA+ ++
Sbjct: 153 SHPATSRI 160
>gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 26.2 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 5 AEDRALVRALWKKLGSNVGVYTTEALE 31
A+ R LV ALW++LG+ + T E LE
Sbjct: 896 AQGRELVFALWQQLGAVLKDITPEGLE 922
>gi|239751887 PREDICTED: hypothetical protein XP_002348022 [Homo
sapiens]
Length = 174
Score = 26.2 bits (56), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 34 FLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLR 93
F AFPA T S+VRA+ + A L + + PH AC LR
Sbjct: 102 FAAFPAPTTT---------RSRVRAYCLQPASVLRPHIHEVWSRPHPRRRTPPTRACALR 152
Query: 94 VDPASFQL 101
PA+ ++
Sbjct: 153 SHPATSRI 160
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 26.2 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 5 AEDRALVRALWKKLGSNVGVYTTEALE 31
A+ R LV ALW++LG+ + T E LE
Sbjct: 1195 AQGRELVFALWQQLGAVLKDITPEGLE 1221
>gi|239746377 PREDICTED: hypothetical protein XP_002343700 [Homo
sapiens]
Length = 174
Score = 26.2 bits (56), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 34 FLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLR 93
F AFPA T S+VRA+ + A L + + PH AC LR
Sbjct: 102 FAAFPAPTTT---------RSRVRAYCLQPASVLRPHIHEVWSRPHPRRRTPPTRACALR 152
Query: 94 VDPASFQL 101
PA+ ++
Sbjct: 153 SHPATSRI 160
>gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 26.2 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 5 AEDRALVRALWKKLGSNVGVYTTEALE 31
A+ R LV ALW++LG+ + T E LE
Sbjct: 896 AQGRELVFALWQQLGAVLKDITPEGLE 922
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,013,753
Number of Sequences: 37866
Number of extensions: 186712
Number of successful extensions: 433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 31
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.