Guide to the Human Genome
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Name: LOC100293725 Sequence: fasta or formatted (174aa) NCBI GI: 239757402
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         24           2
 C cysteine            1.7          3           1
 D aspartate           2.3          4           1
 E glutamate           1.7          3           1
 F phenylalanine       3.4          6           1
 G glycine             5.7         10           1
 H histidine           5.7         10           1
 I isoleucine          1.7          3           1
 K lysine              1.1          2           1
 L leucine             9.8         17           2
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline            13.8         24           2
 Q glutamine           3.4          6           1
 R arginine           13.2         23           3
 S serine              5.7         10           1
 T threonine           9.2         16           3
 V valine              3.4          6           1
 W tryptophan          2.3          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291395          1.000   PREDICTED: hypothetical protein XP_002348022 
LOC100288114          1.000   PREDICTED: hypothetical protein XP_002343700 
LOC646034             0.035   PREDICTED: hypothetical protein 
LOC646034             0.035   PREDICTED: hypothetical protein 
LOC646034             0.035   PREDICTED: hypothetical protein 
LOC100292845          0.029   PREDICTED: hypothetical protein 
LOC100289230          0.029   PREDICTED: hypothetical protein XP_002342600 
LOC100287045          0.029   PREDICTED: hypothetical protein XP_002342469 isofor...
LOC100287045          0.029   PREDICTED: hypothetical protein XP_002342468 isofor...
FAM90A20              0.023   PREDICTED: hypothetical protein 
LOC646509             0.023   PREDICTED: hypothetical protein 
LOC643669             0.020   PREDICTED: similar to mCG2980 
LOC643669             0.020   PREDICTED: similar to mCG2980 isoform 1 
LOC643669             0.020   PREDICTED: similar to mCG2980 isoform 1 
FAM90A5               0.020   PREDICTED: hypothetical protein 
FAM90A13              0.020   PREDICTED: hypothetical protein 
FAM90A15              0.020   PREDICTED: hypothetical protein LOC389630 
FAM90A10              0.020   PREDICTED: hypothetical protein LOC441328 
FAM90A14              0.020   PREDICTED: hypothetical protein 
LOC100293870          0.020   PREDICTED: hypothetical protein 
FAM90A20              0.020   PREDICTED: hypothetical protein 
LOC100289085          0.020   PREDICTED: hypothetical protein XP_002343916 
LOC100288738          0.020   PREDICTED: hypothetical protein XP_002343788 
LOC729370             0.017   PREDICTED: hypothetical protein 
MTX1                  0.017   metaxin 1 isoform 1 
MTX1                  0.017   metaxin 1 isoform 2 
FAM90A3               0.015   PREDICTED: hypothetical protein 
MLL5                  0.015   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.015   myeloid/lymphoid or mixed-lineage leukemia 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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