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Search of human proteins with 4885363
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885363 goosecoid homeobox 2 [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 426 e-120
gi|27777663 goosecoid [Homo sapiens] 107 5e-24
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 95 5e-20
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 87 1e-17
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 86 2e-17
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 86 2e-17
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 86 2e-17
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 86 2e-17
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 86 2e-17
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 86 3e-17
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 85 5e-17
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 85 5e-17
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 84 8e-17
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 83 2e-16
gi|4557489 cone-rod homeobox protein [Homo sapiens] 83 2e-16
gi|46249382 paired-like homeobox 2a [Homo sapiens] 82 2e-16
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 80 9e-16
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 80 9e-16
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 80 9e-16
gi|12707580 paired-like homeobox 2b [Homo sapiens] 80 9e-16
gi|7706659 paired related homeobox 2 [Homo sapiens] 80 9e-16
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 80 1e-15
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 79 2e-15
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 79 2e-15
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 79 2e-15
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 79 2e-15
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 79 2e-15
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 79 2e-15
gi|24497589 aristaless related homeobox [Homo sapiens] 79 2e-15
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 78 5e-15
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 426 bits (1094), Expect = e-120
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MAAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGAPE 60
MAAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGAPE
Sbjct: 1 MAAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGAPE 60
Query: 61 AAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVGP 120
AAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVGP
Sbjct: 61 AAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVGP 120
Query: 121 GSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAK 180
GSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAK
Sbjct: 121 GSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAK 180
Query: 181 WRHQKRASASARLLPGVKKSPKGSC 205
WRHQKRASASARLLPGVKKSPKGSC
Sbjct: 181 WRHQKRASASARLLPGVKKSPKGSC 205
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 107 bits (268), Expect = 5e-24
Identities = 76/194 (39%), Positives = 101/194 (52%), Gaps = 24/194 (12%)
Query: 4 AAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGA--PEA 61
A+GGA+S GA P P + P A P +G + G +A
Sbjct: 46 ASGGASSDYGAFYPRPVA-------------PGGAGLPAAVSGSRLGYNNYFYGQLHVQA 92
Query: 62 APCACCCC-----CGPRAAPCGP-PEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALP 115
AP CC G + C P P G G+ L P+ +++G + L
Sbjct: 93 APVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLL 152
Query: 116 GAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFK 175
+ RR RRHRTIF++EQL+ALE LF + +YPDV TRE+LA ++ LREE+VEVWFK
Sbjct: 153 NQL---HCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFK 209
Query: 176 NRRAKWRHQKRASA 189
NRRAKWR QKR+S+
Sbjct: 210 NRRAKWRRQKRSSS 223
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 94.7 bits (234), Expect = 5e-20
Identities = 65/166 (39%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 31 ERSLPARAACPPQPAGRQSPAKPEEPG-APE-AAPCACCCCCGPRAAPCGPPEAAAGLGA 88
+R L AR ACP P P+ P P APE AP C P P EA
Sbjct: 64 DRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYC--------PKEPGEA------ 109
Query: 89 RLAWPLRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQN 148
R P +P+ PA G L P +++ RR+RT F+ QL LE F ++
Sbjct: 110 ------RPSPGLPVG---PATGEAKLSEEEQP--KKKHRRNRTTFTTYQLHELERAFEKS 158
Query: 149 QYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASARLL 194
YPDV +RE LAG++ L E RV+VWF+NRRAKWR Q++ S+ L
Sbjct: 159 HYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKL 204
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 86.7 bits (213), Expect = 1e-17
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR+RT F+ +QL+ALEA+F Q YPDV TRE LA +I L E RV+VWF+NRRAKWR
Sbjct: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
Query: 183 HQKRASASARLLPGVKK 199
+R ++ PG K+
Sbjct: 95 KTERGASDQE--PGAKE 109
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/71 (57%), Positives = 51/71 (71%)
Query: 116 GAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFK 175
GA P ++R RR RT F+ +QLQ LEA F +N+YPD+STRE +A L E RV VWFK
Sbjct: 82 GAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 141
Query: 176 NRRAKWRHQKR 186
NRRAKWR ++R
Sbjct: 142 NRRAKWRKRER 152
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/71 (57%), Positives = 51/71 (71%)
Query: 116 GAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFK 175
GA P ++R RR RT F+ +QLQ LEA F +N+YPD+STRE +A L E RV VWFK
Sbjct: 29 GAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 88
Query: 176 NRRAKWRHQKR 186
NRRAKWR ++R
Sbjct: 89 NRRAKWRKRER 99
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/71 (57%), Positives = 51/71 (71%)
Query: 116 GAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFK 175
GA P ++R RR RT F+ +QLQ LEA F +N+YPD+STRE +A L E RV VWFK
Sbjct: 75 GAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 134
Query: 176 NRRAKWRHQKR 186
NRRAKWR ++R
Sbjct: 135 NRRAKWRKRER 145
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 85.9 bits (211), Expect = 2e-17
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 108 AGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLRE 167
AGG+G GA P +++ RR RT F+ +QLQ LEA F +N+YPD+S RE +A L E
Sbjct: 72 AGGTGC-GGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 130
Query: 168 ERVEVWFKNRRAKWRHQKR 186
RV VWFKNRRAKWR ++R
Sbjct: 131 PRVRVWFKNRRAKWRKRER 149
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 85.9 bits (211), Expect = 2e-17
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 19/123 (15%)
Query: 79 PPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVG-PGSQRRTRRHRTIFSEEQ 137
PP GLG GPA+ L L +VG P + R+ RR RT F+ Q
Sbjct: 8 PPYGMNGLGLA-------GPAMDL-----------LHPSVGYPATPRKQRRERTTFTRSQ 49
Query: 138 LQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASARLLPGV 197
L LEALF + +YPD+ RE +A +I L E RV+VWFKNRRAK R Q+++ + + P
Sbjct: 50 LDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAK 109
Query: 198 KKS 200
KKS
Sbjct: 110 KKS 112
Score = 29.3 bits (64), Expect = 2.4
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 31 ERSLPARAACPPQPAGRQSPAKPEEPGAPEAAPCACCCCCGPRAAPCGPPEAAAGLGARL 90
++S P R + + +G+ +P P + ++ A P AA AAAGLG
Sbjct: 110 KKSSPVRESSGSESSGQFTP--PAVSSSASSSSSASSSSANPAAA------AAAGLGGNP 161
Query: 91 AWPLRLGPAVPLSLGAPAGGSGALPGAVGPGS 122
A SL PA S P ++ PGS
Sbjct: 162 V-------AAASSLSTPAASSIWSPASISPGS 186
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 85.5 bits (210), Expect = 3e-17
Identities = 40/70 (57%), Positives = 50/70 (71%)
Query: 117 AVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKN 176
A GP R RR RT F++ QLQ LE F ++QYPDV RERLA R+ L E+RV+VWF+N
Sbjct: 130 AEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQN 189
Query: 177 RRAKWRHQKR 186
RRAKW+ +R
Sbjct: 190 RRAKWKRNQR 199
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 84.7 bits (208), Expect = 5e-17
Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
Query: 111 SGALPG-AVGPGS-QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREE 168
S +LPG + GS +++ RR RT F+ +QLQ LEA F +N+YPD+STRE +A L E
Sbjct: 45 SASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEA 104
Query: 169 RVEVWFKNRRAKWRHQKRASASARLLPGVKKSPKG 203
RV VWFKNRRAKWR ++R S A L G +P G
Sbjct: 105 RVRVWFKNRRAKWRKRER-SQQAELCKGSFAAPLG 138
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 84.7 bits (208), Expect = 5e-17
Identities = 61/148 (41%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 41 PPQPAGRQSPAKPEEPGAPEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAV 100
PP PA PA P PG P AG R P P
Sbjct: 32 PPSPAAALLPAPPAGPG----------------------PATFAGFLGRDPGP---APPP 66
Query: 101 PLSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLA 160
P SLG+PA GA A SQRR R T FS EQLQ LE +F + +YPD+ RERLA
Sbjct: 67 PASLGSPAPPKGA---AAPSASQRRKR---TSFSAEQLQLLELVFRRTRYPDIHLRERLA 120
Query: 161 GRIRLREERVEVWFKNRRAKWRHQKRAS 188
L E R++VWF+NRRAK R Q S
Sbjct: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKS 148
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 84.0 bits (206), Expect = 8e-17
Identities = 75/215 (34%), Positives = 97/215 (45%), Gaps = 36/215 (16%)
Query: 2 AAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPG---- 57
A GG S RG+ RP F+I +L E LPA A P Q +G + PA PG
Sbjct: 16 ALVPGG--SPRGS-RPRGFAITDLLGL--EAELPAPAG-PGQGSGCEGPAVAPCPGPGLD 69
Query: 58 ----APEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAW--PLRLGPAVPL--SLGAPAG 109
A A P CG P A L A + + P PA PL S PA
Sbjct: 70 GSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPAL 129
Query: 110 GSGALPGAVGPGSQ------------------RRTRRHRTIFSEEQLQALEALFVQNQYP 151
G +V + R+ RRHRT+F+ QL+ LE F + YP
Sbjct: 130 GRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYP 189
Query: 152 DVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKR 186
DV RE LA + L E+R++VWF+NRRAKWR +++
Sbjct: 190 DVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREK 224
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 82.8 bits (203), Expect = 2e-16
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 106 APAGGSGALPGAVGPGSQ---RRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGR 162
+P G G +GPG + ++ RR+RT F+ QL LE F + YPDV +RE LA +
Sbjct: 4 SPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAK 63
Query: 163 IRLREERVEVWFKNRRAKWRHQKR--ASASARLLPGVKKSP 201
+ L E RV+VWF+NRRAKWR Q+R + + A P + ++P
Sbjct: 64 VHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAP 104
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 82.8 bits (203), Expect = 2e-16
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 120 PGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRA 179
P + R+ RR RT F+ QL+ LEALF + QYPDV RE +A +I L E RV+VWFKNRRA
Sbjct: 33 PSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRA 92
Query: 180 KWRHQKRASASARLLPG 196
K R Q++ + PG
Sbjct: 93 KCRQQRQQQKQQQQPPG 109
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 82.4 bits (202), Expect = 2e-16
Identities = 63/162 (38%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 43 QPAGRQ-SPAKPEEPGAPEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAVP 101
QP G Q SP +P P A GPP A G LR P
Sbjct: 29 QPGGFQYSPLRPAFPAA-------------------GPPCPALGSSNCALGALRDHQPAP 69
Query: 102 LSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAG 161
S A P G +R+ RR RT F+ QL+ LE +F + YPD+ TRE LA
Sbjct: 70 YS----AVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELAL 125
Query: 162 RIRLREERVEVWFKNRRAKWRHQKRASASARLLPGVKKSPKG 203
+I L E RV+VWF+NRRAK+R Q+RA ASA+ G + KG
Sbjct: 126 KIDLTEARVQVWFQNRRAKFRKQERA-ASAKGAAGAAGAKKG 166
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 80.5 bits (197), Expect = 9e-16
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 183 HQKRASASA---RLLPG 196
Q A+ A LLPG
Sbjct: 274 KQAGANQLAAFNHLLPG 290
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 80.5 bits (197), Expect = 9e-16
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271
Query: 183 HQKRASASA---RLLPG 196
Q A+ A LLPG
Sbjct: 272 KQAGANQLAAFNHLLPG 288
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 80.5 bits (197), Expect = 9e-16
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 183 HQKRASASA---RLLPG 196
Q A+ A LLPG
Sbjct: 274 KQAGANQLAAFNHLLPG 290
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 80.5 bits (197), Expect = 9e-16
Identities = 39/73 (53%), Positives = 53/73 (72%)
Query: 119 GPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRR 178
G +R+ RR RT F+ QL+ LE +F + YPD+ TRE LA +I L E RV+VWF+NRR
Sbjct: 91 GLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 150
Query: 179 AKWRHQKRASASA 191
AK+R Q+RA+A+A
Sbjct: 151 AKFRKQERAAAAA 163
Score = 32.3 bits (72), Expect = 0.29
Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 42 PQPAGRQSPAKPEEP-------GAPEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPL 94
P PAG A P P GA AA A AA G AA G G W
Sbjct: 218 PSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQ--GWAP 275
Query: 95 RLGP--AVPLSLGAP 107
GP ++P SLG P
Sbjct: 276 GPGPITSIPDSLGGP 290
Score = 27.7 bits (60), Expect = 7.1
Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 2 AAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGR-QSPAKPEEPGAPE 60
AAAA AA++ G+ S + SS + S A++ P G +P GA
Sbjct: 159 AAAAAAAAAKNGS------SGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANG 212
Query: 61 AAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPG---- 116
P AA G P G G A A + A AGG A G
Sbjct: 213 GGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQG 272
Query: 117 -AVGPG 121
A GPG
Sbjct: 273 WAPGPG 278
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 80.5 bits (197), Expect = 9e-16
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 103 SLGAPAGGSGALPGAVGPGSQRRT-RRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAG 161
S AP G PG +++ RR+RT F+ QLQALE +F + YPD RE LA
Sbjct: 80 SEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELAR 139
Query: 162 RIRLREERVEVWFKNRRAKWRHQKRASASAR 192
R+ L E RV+VWF+NRRAK+R +RA ++R
Sbjct: 140 RVNLSEARVQVWFQNRRAKFRRNERAMLASR 170
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 80.1 bits (196), Expect = 1e-15
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 94 LRLGPAVPLSLGAPAGGSGALPGAVG-PGSQRRTRRHRTIFSEEQLQALEALFVQNQYPD 152
L+ P L G L +VG P + R+ RR RT F+ QL LEALF + +YPD
Sbjct: 5 LKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPD 64
Query: 153 VSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASA---RLLPGVKKS 200
+ RE +A +I L E RV+VWFKNRRAK R Q++ + ++ P KK+
Sbjct: 65 IFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKT 115
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 79.3 bits (194), Expect = 2e-15
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274
Query: 183 HQKRAS---ASARLLPG 196
Q A+ A L+PG
Sbjct: 275 KQAGANQLMAFNHLIPG 291
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 79.3 bits (194), Expect = 2e-15
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 183 HQKRAS---ASARLLPG 196
Q A+ A L+PG
Sbjct: 276 KQAGANQLMAFNHLIPG 292
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 79.3 bits (194), Expect = 2e-15
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 183 HQKRAS---ASARLLPG 196
Q A+ A L+PG
Sbjct: 276 KQAGANQLMAFNHLIPG 292
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 79.3 bits (194), Expect = 2e-15
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 183 HQKRAS---ASARLLPG 196
Q A+ A L+PG
Sbjct: 276 KQAGANQLMAFNHLIPG 292
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 79.3 bits (194), Expect = 2e-15
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 183 HQKRAS---ASARLLPG 196
Q A+ A L+PG
Sbjct: 276 KQAGANQLMAFNHLIPG 292
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 79.3 bits (194), Expect = 2e-15
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR RT F+ EQL+ LE F + YPD+ TRE LA R +L E RV+VWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 183 HQKRAS---ASARLLPG 196
Q A+ A L+PG
Sbjct: 276 KQAGANQLMAFNHLIPG 292
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 79.3 bits (194), Expect = 2e-15
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ RR+RT F+ QL+ LE F + YPDV TRE LA R+ L E RV+VWF+NRRAKWR
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384
Query: 183 HQKRASA 189
+++A A
Sbjct: 385 KREKAGA 391
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 78.2 bits (191), Expect = 5e-15
Identities = 34/64 (53%), Positives = 49/64 (76%)
Query: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182
+R+ +R+RT F++EQ++ALE F + YPDV RERLA +I L E R++VWF NRRAKWR
Sbjct: 207 KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 266
Query: 183 HQKR 186
+++
Sbjct: 267 REEK 270
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,540,396
Number of Sequences: 37866
Number of extensions: 672339
Number of successful extensions: 7218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 693
Number of HSP's that attempted gapping in prelim test: 5446
Number of HSP's gapped (non-prelim): 2169
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.