Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4885081
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885081 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C1 precursor [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50659069 ATP synthase, H+ transporting, mitochondrial F0 comp... 264 2e-71
gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 compl... 264 2e-71
gi|169206305 PREDICTED: similar to hCG1639781 [Homo sapiens] 202 5e-53
gi|239750572 PREDICTED: similar to hCG1639781 [Homo sapiens] 202 5e-53
gi|239744873 PREDICTED: hypothetical protein LOC390424 [Homo sap... 202 5e-53
gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 compl... 178 1e-45
gi|50659074 ATP synthase, H+ transporting, mitochondrial F0 comp... 178 1e-45
gi|85794840 ATP synthase, H+ transporting, mitochondrial F0 comp... 170 3e-43
gi|50593533 ATP synthase, H+ transporting, mitochondrial F0 comp... 170 3e-43
gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Hom... 33 0.094
gi|217416366 major facilitator superfamily domain containing 9 [... 29 1.0
gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit... 29 1.0
gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ... 29 1.0
gi|4506975 solute carrier family 12 (sodium/potassium/chloride t... 28 1.8
gi|40217833 G protein-coupled receptor family C, group 5, member... 28 3.0
gi|40217831 G protein-coupled receptor family C, group 5, member... 28 3.0
gi|49619231 solute carrier family 37 member 1 [Homo sapiens] 28 3.0
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 27 3.9
gi|108860697 zinc finger protein 592 [Homo sapiens] 27 5.1
gi|56790897 LMBR1 domain containing 2 [Homo sapiens] 27 5.1
gi|119703744 desmoglein 1 preproprotein [Homo sapiens] 27 6.7
gi|22749191 tetratricopeptide repeat domain 39B [Homo sapiens] 27 6.7
gi|4502565 calpain, small subunit 1 [Homo sapiens] 26 8.8
gi|51599151 calpain, small subunit 1 [Homo sapiens] 26 8.8
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 26 8.8
gi|157743247 F-box protein 45 [Homo sapiens] 26 8.8
>gi|50659069 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C1 precursor [Homo sapiens]
Length = 136
Score = 264 bits (674), Expect = 2e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
Sbjct: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
Query: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
Sbjct: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
Query: 121 MGLFCLMVAFLILFAM 136
MGLFCLMVAFLILFAM
Sbjct: 121 MGLFCLMVAFLILFAM 136
>gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C1 precursor [Homo sapiens]
Length = 136
Score = 264 bits (674), Expect = 2e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
Sbjct: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
Query: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
Sbjct: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
Query: 121 MGLFCLMVAFLILFAM 136
MGLFCLMVAFLILFAM
Sbjct: 121 MGLFCLMVAFLILFAM 136
>gi|169206305 PREDICTED: similar to hCG1639781 [Homo sapiens]
Length = 125
Score = 202 bits (515), Expect = 5e-53
Identities = 107/125 (85%), Positives = 110/125 (88%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
MQT GAL ISPA CCT GLIR VSASFLNSP NS KQPSYS+ PL+VARREFQTS+VS
Sbjct: 1 MQTTGALLISPAWNLCCTWGLIRTVSASFLNSPDNSPKQPSYSSSPLRVARREFQTSIVS 60
Query: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
RDID AAK IGAGAATVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEA
Sbjct: 61 RDIDIAAKLIGAGAATVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEA 120
Query: 121 MGLFC 125
MGLFC
Sbjct: 121 MGLFC 125
>gi|239750572 PREDICTED: similar to hCG1639781 [Homo sapiens]
Length = 125
Score = 202 bits (515), Expect = 5e-53
Identities = 107/125 (85%), Positives = 110/125 (88%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
MQT GAL ISPA CCT GLIR VSASFLNSP NS KQPSYS+ PL+VARREFQTS+VS
Sbjct: 1 MQTTGALLISPAWNLCCTWGLIRTVSASFLNSPDNSPKQPSYSSSPLRVARREFQTSIVS 60
Query: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
RDID AAK IGAGAATVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEA
Sbjct: 61 RDIDIAAKLIGAGAATVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEA 120
Query: 121 MGLFC 125
MGLFC
Sbjct: 121 MGLFC 125
>gi|239744873 PREDICTED: hypothetical protein LOC390424 [Homo
sapiens]
Length = 125
Score = 202 bits (515), Expect = 5e-53
Identities = 107/125 (85%), Positives = 110/125 (88%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS 60
MQT GAL ISPA CCT GLIR VSASFLNSP NS KQPSYS+ PL+VARREFQTS+VS
Sbjct: 1 MQTTGALLISPAWNLCCTWGLIRTVSASFLNSPDNSPKQPSYSSSPLRVARREFQTSIVS 60
Query: 61 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
RDID AAK IGAGAATVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEA
Sbjct: 61 RDIDIAAKLIGAGAATVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEA 120
Query: 121 MGLFC 125
MGLFC
Sbjct: 121 MGLFC 125
>gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C3 precursor [Homo sapiens]
Length = 142
Score = 178 bits (451), Expect = 1e-45
Identities = 100/142 (70%), Positives = 109/142 (76%), Gaps = 6/142 (4%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF 54
M L +P+LIR +R RP+SAS L+ P S + F Q+ +REF
Sbjct: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
Query: 55 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 114
QTS +SRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
Query: 115 FALSEAMGLFCLMVAFLILFAM 136
FALSEAMGLFCLMVAFLILFAM
Sbjct: 121 FALSEAMGLFCLMVAFLILFAM 142
>gi|50659074 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C3 precursor [Homo sapiens]
Length = 142
Score = 178 bits (451), Expect = 1e-45
Identities = 100/142 (70%), Positives = 109/142 (76%), Gaps = 6/142 (4%)
Query: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF 54
M L +P+LIR +R RP+SAS L+ P S + F Q+ +REF
Sbjct: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
Query: 55 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 114
QTS +SRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
Query: 115 FALSEAMGLFCLMVAFLILFAM 136
FALSEAMGLFCLMVAFLILFAM
Sbjct: 121 FALSEAMGLFCLMVAFLILFAM 142
>gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform b precursor [Homo sapiens]
Length = 198
Score = 170 bits (431), Expect = 3e-43
Identities = 95/132 (71%), Positives = 106/132 (80%), Gaps = 5/132 (3%)
Query: 10 SPALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREFQTSVVSRDID 64
+P+L++ ++ L RP+SA L P + S + PL V+ R FQTS +SRDID
Sbjct: 67 TPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDID 126
Query: 65 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 124
TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF
Sbjct: 127 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 186
Query: 125 CLMVAFLILFAM 136
CLMVAFLILFAM
Sbjct: 187 CLMVAFLILFAM 198
>gi|50593533 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform a precursor [Homo sapiens]
Length = 157
Score = 170 bits (431), Expect = 3e-43
Identities = 95/132 (71%), Positives = 106/132 (80%), Gaps = 5/132 (3%)
Query: 10 SPALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREFQTSVVSRDID 64
+P+L++ ++ L RP+SA L P + S + PL V+ R FQTS +SRDID
Sbjct: 26 TPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDID 85
Query: 65 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 124
TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF
Sbjct: 86 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 145
Query: 125 CLMVAFLILFAM 136
CLMVAFLILFAM
Sbjct: 146 CLMVAFLILFAM 157
>gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Homo
sapiens]
Length = 155
Score = 32.7 bits (73), Expect = 0.094
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 62 DIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
DI F+ GA +VG++G AG IG V + + G A+ P +LF IL +
Sbjct: 83 DISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFA 138
Query: 119 EAMGLFCLMVAFLI 132
E +GL+ L+VA ++
Sbjct: 139 EVLGLYGLIVALIL 152
>gi|217416366 major facilitator superfamily domain containing 9
[Homo sapiens]
Length = 474
Score = 29.3 bits (64), Expect = 1.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 54 FQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIG-----YARNPSLKQQLF 108
F S+V + K +GA G+ GS GI +F S ++G R SL +
Sbjct: 58 FGVSMVVPLLSLHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLACIL 117
Query: 109 SYAILGFALSEAMGLFCLMVA 129
A+ L A +F ++A
Sbjct: 118 LSALGYLLLGAATNVFLFVLA 138
>gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 2 [Homo sapiens]
Length = 158
Score = 29.3 bits (64), Expect = 1.0
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 61 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 82 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
Query: 119 EAMGLFCLMVAFL 131
A+GLF ++VA L
Sbjct: 137 SAIGLFGVIVAIL 149
>gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 1 [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 1.0
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 61 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
Query: 119 EAMGLFCLMVAFL 131
A+GLF ++VA L
Sbjct: 184 SAIGLFGVIVAIL 196
>gi|4506975 solute carrier family 12 (sodium/potassium/chloride
transporters), member 2 [Homo sapiens]
Length = 1212
Score = 28.5 bits (62), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 50 ARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAG 85
++ FQ +VS + AA A AA AG+GAG
Sbjct: 77 SQSRFQVDLVSENAGRAAAAAAAAAAAAAAAGAGAG 112
>gi|40217833 G protein-coupled receptor family C, group 5, member C
isoform b [Homo sapiens]
Length = 453
Score = 27.7 bits (60), Expect = 3.0
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG---FALSEAMGLFCLMVAFLI 132
A +GAGI T F II A P + Q ++LG F L +GLFCL+ A ++
Sbjct: 67 AVAGAGIVTTFVLTIILVASLPFV-QDTKKRSLLGTQVFFLLGTLGLFCLVFACVV 121
>gi|40217831 G protein-coupled receptor family C, group 5, member C
isoform a [Homo sapiens]
Length = 486
Score = 27.7 bits (60), Expect = 3.0
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG---FALSEAMGLFCLMVAFLI 132
A +GAGI T F II A P + Q ++LG F L +GLFCL+ A ++
Sbjct: 100 AVAGAGIVTTFVLTIILVASLPFV-QDTKKRSLLGTQVFFLLGTLGLFCLVFACVV 154
>gi|49619231 solute carrier family 37 member 1 [Homo sapiens]
Length = 533
Score = 27.7 bits (60), Expect = 3.0
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 71 GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAF 130
G +GV S +G + GSLI GY + S+ + G A+ AMG+ C + F
Sbjct: 187 GRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCWG---LSFVVPG-AIVAAMGIVCFL--F 240
Query: 131 LI 132
LI
Sbjct: 241 LI 242
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 27.3 bits (59), Expect = 3.9
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 26 SASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAG 85
SA+ LNSP + + LQ++ +++SVV+R + F+ +T ++G A
Sbjct: 203 SATLLNSPDRARR--------LQLS--PWESSVVNRLLTPTHSFLARSKSTAALSGEAAS 252
Query: 86 IGTVFGSLIIGYARNPSLKQQLF 108
+ ++RN + +LF
Sbjct: 253 CSPIIMPYKAAHSRNSMDRPKLF 275
>gi|108860697 zinc finger protein 592 [Homo sapiens]
Length = 1267
Score = 26.9 bits (58), Expect = 5.1
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 10 SPALIRCCTRGLIRPVSAS--FLNSPVNSS 37
S L+ C++ L++P+SA F+++PVNS+
Sbjct: 641 SKGLVMQCSQLLVKPISADQMFVSAPVNST 670
>gi|56790897 LMBR1 domain containing 2 [Homo sapiens]
Length = 695
Score = 26.9 bits (58), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 89 VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMV 128
+FG+ +I A NP L + +G A + GLF L++
Sbjct: 161 IFGAFLIYVAVNPHLHLEWNQLQTIGIAAANTWGLFLLVL 200
>gi|119703744 desmoglein 1 preproprotein [Homo sapiens]
Length = 1049
Score = 26.6 bits (57), Expect = 6.7
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 71 GAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS 102
G+GA + G++G G G+ ++ G+ IG+ R+ S
Sbjct: 987 GSGALSGAGISGGGIGLSSLGGTASIGHMRSSS 1019
>gi|22749191 tetratricopeptide repeat domain 39B [Homo sapiens]
Length = 616
Score = 26.6 bits (57), Expect = 6.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 16 CCTRGLIRPVSASF-LNSPVNSSKQPSYSNFPLQVARREFQTSVVSR-DIDTAAKFI 70
CC + L RP+ A N V S K Y ++ + E + S+ +ID A KF+
Sbjct: 527 CCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVPFTLFELASLYKSQGEIDKAIKFL 583
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 71 GAGAATVGVAGSGAGIGTVFGSLIIG 96
G G G G G G+G V G LI G
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISG 35
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 71 GAGAATVGVAGSGAGIGTVFGSLIIG 96
G G G G G G+G V G LI G
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISG 35
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 26.2 bits (56), Expect = 8.8
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 20 GLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGV 79
G+I P+SAS + V +K+ + LQ A + S D + ++
Sbjct: 407 GVISPLSASAMILTVCRTKEAEFQRHVLQTAVADSPRDTASLFSDVVDSILNQTHDSLAD 466
Query: 80 AGSGAGIGTVFGSLIIGYAR--NPSLKQQLFSYAILGFALSEAMGLFCLMVA 129
S A + +G+ +P++ ++ F + + A S+ M F L+ A
Sbjct: 467 TASAASPVPEWAQQELGHTTPWSPAVVEKWFPFCNISGASSDLMESFGLLQA 518
>gi|157743247 F-box protein 45 [Homo sapiens]
Length = 286
Score = 26.2 bits (56), Expect = 8.8
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 66 AAKFIGAGAAT--VGVAGSGAGIGTVFGSLIIGY-ARNPS-LKQQLFSY 110
AA GAGAA+ G +G GAG G GS G R PS + + +FSY
Sbjct: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSY 50
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,178,805
Number of Sequences: 37866
Number of extensions: 159919
Number of successful extensions: 805
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 27
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.