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Search of human proteins with 48717226
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48717226 AlkB homolog 2 [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224451107 AlkB homolog 2 [Homo sapiens] 540 e-154
gi|48717226 AlkB homolog 2 [Homo sapiens] 540 e-154
gi|224451103 AlkB homolog 2 [Homo sapiens] 540 e-154
gi|21040275 AlkB homolog 3 [Homo sapiens] 110 1e-24
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 0.43
gi|8922528 kelch-like 11 [Homo sapiens] 32 0.43
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 32 0.73
gi|122937263 fat mass and obesity associated [Homo sapiens] 31 0.95
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 30 1.6
gi|116805332 musculin [Homo sapiens] 30 2.8
gi|4758216 dishevelled 2 [Homo sapiens] 29 3.6
gi|16904383 leucine rich repeat containing 7 [Homo sapiens] 29 3.6
gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens] 29 3.6
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 29 4.7
gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] 29 4.7
gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapi... 29 4.7
gi|239757693 PREDICTED: hypothetical protein XP_002345522 [Homo ... 28 6.2
gi|239753423 PREDICTED: hypothetical protein [Homo sapiens] 28 6.2
gi|239747987 PREDICTED: hypothetical protein XP_002346490 [Homo ... 28 6.2
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 28 6.2
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 28 6.2
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 28 6.2
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 28 8.1
gi|7657575 sirtuin 1 isoform a [Homo sapiens] 28 8.1
gi|37577148 NCK interacting protein with SH3 domain isoform 2 [H... 28 8.1
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 28 8.1
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 28 8.1
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 28 8.1
>gi|224451107 AlkB homolog 2 [Homo sapiens]
Length = 261
Score = 540 bits (1390), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI 60
MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
Sbjct: 1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI 60
Query: 61 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL 120
RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL
Sbjct: 61 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL 120
Query: 121 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP 180
TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP
Sbjct: 121 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP 180
Query: 181 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV 240
GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV
Sbjct: 181 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV 240
Query: 241 RKKVLAPRVNLTFRKILLTKK 261
RKKVLAPRVNLTFRKILLTKK
Sbjct: 241 RKKVLAPRVNLTFRKILLTKK 261
>gi|48717226 AlkB homolog 2 [Homo sapiens]
Length = 261
Score = 540 bits (1390), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI 60
MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
Sbjct: 1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI 60
Query: 61 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL 120
RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL
Sbjct: 61 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL 120
Query: 121 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP 180
TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP
Sbjct: 121 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP 180
Query: 181 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV 240
GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV
Sbjct: 181 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV 240
Query: 241 RKKVLAPRVNLTFRKILLTKK 261
RKKVLAPRVNLTFRKILLTKK
Sbjct: 241 RKKVLAPRVNLTFRKILLTKK 261
>gi|224451103 AlkB homolog 2 [Homo sapiens]
Length = 261
Score = 540 bits (1390), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI 60
MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
Sbjct: 1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI 60
Query: 61 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL 120
RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL
Sbjct: 61 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL 120
Query: 121 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP 180
TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP
Sbjct: 121 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP 180
Query: 181 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV 240
GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV
Sbjct: 181 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV 240
Query: 241 RKKVLAPRVNLTFRKILLTKK 261
RKKVLAPRVNLTFRKILLTKK
Sbjct: 241 RKKVLAPRVNLTFRKILLTKK 261
>gi|21040275 AlkB homolog 3 [Homo sapiens]
Length = 286
Score = 110 bits (275), Expect = 1e-24
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 67 CSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSG 126
C Y EAD I ++L ++V + R + + PR A YG+ L YT+S
Sbjct: 91 CLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDIT---YQQPRLTAWYGE--LPYTYSR 145
Query: 127 LTLSPKP-WIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIA 185
+T+ P P W PVL +++ + TG TFN +L N Y++ D + H DDE L IA
Sbjct: 146 ITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIA 205
Query: 186 SVSFGACRDFVFRHKDSRGKSPS-RRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKV 244
S+SFGA R F R K ++ V V++PL HG+LL+M T W H +P
Sbjct: 206 SLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHS 265
Query: 245 LAPRVNLTFRKI 256
PRVNLTFR +
Sbjct: 266 REPRVNLTFRTV 277
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.3 bits (72), Expect = 0.43
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 21 EPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGP---SWRHIRAEGLDCSYTVLFGKAE 77
EP P L ES R +PR P G S P W+ +R + L T+ G
Sbjct: 4943 EPPVPSPLPLASSPESARPKPRARPPEEGEDSRPPRLKKWKGVRWKRLRLLLTIQKGSGR 5002
Query: 78 ADEIFQELEKEVEYF 92
QE E+EV F
Sbjct: 5003 -----QEDEREVAEF 5012
>gi|8922528 kelch-like 11 [Homo sapiens]
Length = 708
Score = 32.3 bits (72), Expect = 0.43
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 24 GEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI--RAEGLDCSYTVLFGKAEADEI 81
G P + + P E H + SWR R +GL C T+ FG A E
Sbjct: 49 GPGPGISAMEASGGDPGPEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREF 108
Query: 82 FQE---LEKEVEYFTGALA---------RVQVFGKWHSVPRKQATYGDAGLTYTFSG 126
L EYFT L+ RV++ KW S P + +A + Y ++G
Sbjct: 109 RAHRSVLAAATEYFTPLLSGQFSESRSGRVEM-RKWSSEPGPEPDTVEAVIEYMYTG 164
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo
sapiens]
Length = 2365
Score = 31.6 bits (70), Expect = 0.73
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 22/72 (30%)
Query: 14 LRKQEEQEPTGEEPAVL-------GGDKESTRKRP---------------RREAPGNGGH 51
+ +QEE+ P+ +E AV+ G +S+++ P ++E G GG
Sbjct: 157 VERQEEEAPSWDELAVMIPRRPREGPRADSSQRAPSLLTRSPVGGDAAGQKKEDTGGGGR 216
Query: 52 SAGPSWRHIRAE 63
SAG W +R E
Sbjct: 217 SAGQHWARLRGE 228
>gi|122937263 fat mass and obesity associated [Homo sapiens]
Length = 505
Score = 31.2 bits (69), Expect = 0.95
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 77 EADEIFQELEKEVE------YFTGALAR--VQVFGKWHSVPRKQATYGDAGLTYTFSGLT 128
EA + +EL KEV+ + G L R V++ GK P + G+ G TY +
Sbjct: 53 EASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTR 112
Query: 129 LSPKPWIPVLERIRDHVSGVTGQTFNFVLINRY 161
L PW I+ + + F+ +N Y
Sbjct: 113 LFTVPWPVKGSNIKHTEAEIAAACETFLKLNDY 145
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 12 GLLRKQEEQEPTGEEPAVLGGDKE--STRKRPRREAPGNGGHSAGPSWRHIRA 62
GL K+ + P GE P GD S + +PR+E+P + SA W IR+
Sbjct: 623 GLEEKKHAEAPAGENPPRGPGDARAGSGKAKPRQESPSSA--SALAEWASIRS 673
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 18 EEQEPTGEEP----AVLGGDKESTRKRPRREAPGNGGHSAG 54
EE++P GEE G + RKRPR G G SAG
Sbjct: 48 EEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAG 88
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 29.3 bits (64), Expect = 3.6
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 18 EEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAE 77
E EP E +V+ +E R+R E G + GPS G + S T++ + E
Sbjct: 145 ENLEPETETESVVSLRRERPRRRDSSEHGAGGHRTGGPSRLERHLAGYESSSTLMTSELE 204
Query: 78 ADEIFQELEKE 88
+ + E++
Sbjct: 205 STSLGDSDEED 215
>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
Length = 1537
Score = 29.3 bits (64), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 143 DHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVS 188
D + T + +N L N Y G DH+G H ++ L P ++S+S
Sbjct: 951 DEIDIGTYKVYNIPLEN-YASGSDHLGSHERPDKMLGPEHGMSSMS 995
>gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]
Length = 302
Score = 29.3 bits (64), Expect = 3.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 206 SPSRRVAV----VRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI 256
+PSR V V +PL SLL++ W H++ R+ + A RV +TFR++
Sbjct: 220 APSRSVLCQEVEVAIPLPARSLLVLTGAARHQWKHAIH-RRHIEARRVCVTFREL 273
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 28.9 bits (63), Expect = 4.7
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 56 SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATY 115
S++ ++ G DC G ++ D++ LE+E E+ + +Q K H +P K
Sbjct: 862 SYQKPQSFGQDCKSLADPGSSDDDDV-SSLEEEQEFHMRSKNSLQYSAKEHGMPEKNPAE 920
Query: 116 GDAGLTY 122
G+ Y
Sbjct: 921 GNTVFVY 927
>gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens]
Length = 991
Score = 28.9 bits (63), Expect = 4.7
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 19 EQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPS 56
E EP +L D PR E PG H GPS
Sbjct: 690 EHEPPSRPCGLLDEDGSEPLPGPRGEVPGGSAHYGGPS 727
>gi|14249488 zinc finger and SCAN domain containing 10 [Homo
sapiens]
Length = 725
Score = 28.9 bits (63), Expect = 4.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 7 KGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGG 50
KG + ++E EEP+VLG E R +PR P G
Sbjct: 97 KGCASQVPSHSPKKELPAEEPSVLGPSDEPPRPQPRAAQPAEPG 140
>gi|239757693 PREDICTED: hypothetical protein XP_002345522 [Homo
sapiens]
Length = 210
Score = 28.5 bits (62), Expect = 6.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 199 HKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNT---HWYHSLPVRKKVLAPRVNLTFR 254
H S P R+ V +P+A L HPT + H Y + P R + A R + FR
Sbjct: 28 HPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAERQSHRFR 86
>gi|239753423 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 28.5 bits (62), Expect = 6.2
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 5 LVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRP-----RREAPGNGGHSAGPSWRH 59
L G GG R G L G R+RP R A G+G + G W
Sbjct: 12 LTPGPTGGSRRGPPPSGSRGARVGALRGGWLRARRRPGTAPAERPAEGHGRSAKGAGWPL 71
Query: 60 IRAEGLDCSYT 70
+ A +CS++
Sbjct: 72 LGAVAEECSWS 82
>gi|239747987 PREDICTED: hypothetical protein XP_002346490 [Homo
sapiens]
Length = 152
Score = 28.5 bits (62), Expect = 6.2
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 5 LVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRP-----RREAPGNGGHSAGPSWRH 59
L G GG R G L G R+RP R A G+G + G W
Sbjct: 12 LTPGPTGGSRRGPPPSGSRGARVGALRGGWLRARRRPGTAPAERPAEGHGRSAKGAGWPL 71
Query: 60 IRAEGLDCSYT 70
+ A +CS++
Sbjct: 72 LGAVAEECSWS 82
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 28.5 bits (62), Expect = 6.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 3 RFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNG---GHSAGPSWRH 59
R L++ Q +Q+++EP E A R+RPRR N G P +
Sbjct: 32 RALLERLQSRARERQQQREPAQTEAAASTEPATRRRRRPRRRRRVNDAEPGSPEAPQGKR 91
Query: 60 IRAEGLD 66
+A+G D
Sbjct: 92 RKADGED 98
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 28.5 bits (62), Expect = 6.2
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 16 KQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGK 75
K+ +Q + PA K+ T P G GGHS G S A L+ S +
Sbjct: 30 KEYQQRKSPGIPAGAKTKKKKTDSSPETTTSG-GGHSPGDSQYQELAVALESSSVTISQL 88
Query: 76 AEADEIFQELEKEVEY 91
E E ++ +K+VE+
Sbjct: 89 NENIESLKQQKKQVEH 104
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 12 GLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWR 58
GLL++ E E T + PA + ++ST P +P S PS+R
Sbjct: 1227 GLLQQAEMSEITLQPPAAVSFSRKST---PSTGSPSQSSRSGSPSYR 1270
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 28.1 bits (61), Expect = 8.1
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 16 KQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGK 75
K+ +Q + PA K+ T P G GGHS G S A L+ S +
Sbjct: 30 KEYQQRKSPGIPAGAKTKKKKTDSSPETTTSG-GGHSPGDSQYQELAVALESSSVTINQL 88
Query: 76 AEADEIFQELEKEVEY 91
E E ++ +K+VE+
Sbjct: 89 NENIESLKQQKKQVEH 104
>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
Length = 747
Score = 28.1 bits (61), Expect = 8.1
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 24 GEEPAVLGGDKEST--------RKRPRREAPG---NGGHSAGPS-WRHIRAEGLDC---S 68
G P+ G D+E+ RKRPRR+ PG + G G + R + A C +
Sbjct: 12 GGSPSAAGADREAASSPAGEPLRKRPRRDGPGLERSPGEPGGAAPEREVPAAARGCPGAA 71
Query: 69 YTVLFGKAEADEIFQELEKEVE 90
L+ +AEA+ E+E +
Sbjct: 72 AAALWREAEAEAAAAGGEQEAQ 93
>gi|37577148 NCK interacting protein with SH3 domain isoform 2 [Homo
sapiens]
Length = 715
Score = 28.1 bits (61), Expect = 8.1
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 8 GAQGGLLR---KQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEG 64
GA GGL + + PT P V D+E+ A G+GGH+ PS + + G
Sbjct: 155 GADGGLYQIPPQPRRAAPTTPPPPVKRRDREALM------ASGSGGHNTMPSGGNSVSSG 208
Query: 65 LDCSYTVL 72
S T L
Sbjct: 209 SSVSSTSL 216
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 28.1 bits (61), Expect = 8.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 13 LLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGG 50
L R+ ++ E GE+ A G K RK+PRR+ P G
Sbjct: 499 LWRRGQKAEAAGEK-ATAAGAKSRGRKQPRRQKPAVAG 535
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 28.1 bits (61), Expect = 8.1
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 16 KQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGK 75
K+ +Q + PA K+ T P G GGHS G S A L+ S +
Sbjct: 30 KEYQQRKSPGIPAGAKTKKKKTDSSPETTTSG-GGHSPGDSQYQELAVALESSSVTINQL 88
Query: 76 AEADEIFQELEKEVEY 91
E E ++ +K+VE+
Sbjct: 89 NENIESLKQQKKQVEH 104
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 28.1 bits (61), Expect = 8.1
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 19/106 (17%)
Query: 15 RKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSA--GPSWRHIRAEGLDCSYTVL 72
RK+ + P P GG +R +P + PG GG A GP L
Sbjct: 112 RKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGP----------------L 155
Query: 73 FGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDA 118
G A A E E + E E L W VP +A G A
Sbjct: 156 GGGAAAPEDDDEDDDE-ELLEVRLVETPGRELWRMVPAGRAARGQA 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,213,863
Number of Sequences: 37866
Number of extensions: 544621
Number of successful extensions: 1593
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 30
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.