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Search of human proteins with 47717129
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47717129 biogenesis of lysosome-related organelles
complex-1, subunit 2 isoform 2 [Homo sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46852398 biogenesis of lysosome-related organelles complex-1,... 193 3e-50
gi|47717129 biogenesis of lysosome-related organelles complex-1,... 193 3e-50
gi|39725717 coiled-coil domain containing 141 [Homo sapiens] 37 0.004
gi|45505178 cancer antigen 1 [Homo sapiens] 34 0.029
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 33 0.064
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 33 0.064
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 33 0.064
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 33 0.064
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 33 0.064
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 32 0.14
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 32 0.14
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 31 0.19
gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens] 31 0.19
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 31 0.24
gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 ... 31 0.24
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 30 0.32
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 30 0.41
gi|96975038 coiled-coil domain containing 100 [Homo sapiens] 30 0.41
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 30 0.54
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 30 0.54
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 30 0.54
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 30 0.54
gi|42794618 transmembrane protein 81 [Homo sapiens] 30 0.54
gi|34577120 mitochondrial translational release factor 1 [Homo s... 29 0.70
gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens] 29 0.92
gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens] 29 0.92
gi|22208955 ankyrin repeat and SOCS box-containing protein 12 [H... 29 0.92
gi|32171247 cyclin Y isoform 1 [Homo sapiens] 28 1.2
gi|190341110 cyclin Y isoform 2 [Homo sapiens] 28 1.2
gi|118498362 kinectin 1 isoform b [Homo sapiens] 28 1.6
>gi|46852398 biogenesis of lysosome-related organelles complex-1,
subunit 2 isoform 1 [Homo sapiens]
Length = 142
Score = 193 bits (490), Expect = 3e-50
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP 60
MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP
Sbjct: 44 MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP 103
Query: 61 YLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
YLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR
Sbjct: 104 YLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 142
>gi|47717129 biogenesis of lysosome-related organelles complex-1,
subunit 2 isoform 2 [Homo sapiens]
Length = 99
Score = 193 bits (490), Expect = 3e-50
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP 60
MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP
Sbjct: 1 MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP 60
Query: 61 YLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
YLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR
Sbjct: 61 YLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
>gi|39725717 coiled-coil domain containing 141 [Homo sapiens]
Length = 875
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 31 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE 90
S++Y M+D + + KD+ +K+ L+ + N + AL+ ++D Y++K++
Sbjct: 321 SVEYCAMRDEINELKDSFKDIKKKFNNLKFNYTKKNEKSRNLKALKYQIQQVDMYAEKMQ 380
Query: 91 AKYKKLEK 98
A +K+EK
Sbjct: 381 ALKRKMEK 388
>gi|45505178 cancer antigen 1 [Homo sapiens]
Length = 641
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 15 ATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAA 74
A +E + L++ N+ ++ E++ + + + +K+L K Q ++D IN ++E V
Sbjct: 168 ALNEVLQKLKHTNRKQEVRIQELQCSNLYLEKRVKELQMKITKQQVFIDVINKLKENVEE 227
Query: 75 LEQAAYKLDAYSKKLEAKYKKLEK 98
L + YK+ + + LE+
Sbjct: 228 LIEDKYKIILEKNDTKKTLQNLEE 251
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 50 DLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+L +K + L+ Y D ++ A +++ K DA KKLEAK KKL++
Sbjct: 98 ELEEKKSSLKLYQDT----HQEYARVKEECLKSDAQKKKLEAKVKKLQE 142
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP----YLDQ 64
L +L A +E Y E M + K E+++I + L++ + LQ Q
Sbjct: 892 LQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQ 951
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLE 97
+ +EEQ+ E A KL EAK KKLE
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLE 984
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP----YLDQ 64
L +L A +E Y E M + K E+++I + L++ + LQ Q
Sbjct: 899 LQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQ 958
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLE 97
+ +EEQ+ E A KL EAK KKLE
Sbjct: 959 MLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLE 991
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP----YLDQ 64
L +L A +E Y E M + K E+++I + L++ + LQ Q
Sbjct: 899 LQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQ 958
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLE 97
+ +EEQ+ E A KL EAK KKLE
Sbjct: 959 MLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLE 991
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP----YLDQ 64
L +L A +E Y E M + K E+++I + L++ + LQ Q
Sbjct: 892 LQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQ 951
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLE 97
+ +EEQ+ E A KL EAK KKLE
Sbjct: 952 MLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLE 984
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 16 TSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQI----NVIEEQ 71
+ ED K E ++ T+ + L++KD I + RN L + L+ L Q+ N ++ Q
Sbjct: 1024 SGEDNKW-ERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQ 1082
Query: 72 VAALEQAAYKLDAYSKKLEAKYKKLE 97
+ AL++ L + L+ + KL+
Sbjct: 1083 ILALQRQTVSLQEQNTTLQTQNAKLQ 1108
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 KLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAY 80
K LEN NK E++D+ + K+L + L+ ++ +E++ +LEQ
Sbjct: 770 KTLENSNKKIQQLESELQDLEMENQTLQKNLEE----LKISSKRLEQLEKENKSLEQETS 825
Query: 81 KLDAYSKKLEAKYKKLEKR 99
+L+ K+LE + K+L ++
Sbjct: 826 QLEKDKKQLEKENKRLRQQ 844
Score = 29.3 bits (64), Expect = 0.70
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 7 TYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDL----NQKYAGLQPYL 62
T +T SE K + N L L + E++ I +N R L D + +Y L+ L
Sbjct: 903 TLVTLREDLVSEKLKTQQMNNDLEKLTH-ELEKIGLNKERLLHDEQSTDDSRYKLLESKL 961
Query: 63 DQ-----INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+ + + EE++AALE + Y+++L + K ++K
Sbjct: 962 ESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELKTVKK 1002
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 34 YLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE 90
Y E + A + L L ++ LQ + + + E++ ALEQ +L+ ++KL+
Sbjct: 620 YKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLK 676
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 16 TSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQI----NVIEEQ 71
+ ED K E ++ T+ + L++KD I + RN L + L+ L Q+ N ++ Q
Sbjct: 1023 SGEDNKW-ERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQ 1081
Query: 72 VAALEQAAYKLDAYSKKLEAKYKKLE 97
+ AL++ L + L+ + KL+
Sbjct: 1082 ILALQRQTVSLQEQNTTLQTQNAKLQ 1107
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 KLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAY 80
K LEN NK E++D+ + K+L + L+ ++ +E++ +LEQ
Sbjct: 770 KTLENSNKKIQQLESELQDLEMENQTLQKNLEE----LKISSKRLEQLEKENKSLEQETS 825
Query: 81 KLDAYSKKLEAKYKKLEKR 99
+L+ K+LE + K+L ++
Sbjct: 826 QLEKDKKQLEKENKRLRQQ 844
Score = 30.4 bits (67), Expect = 0.32
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 7 TYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKD---LNQKYAGLQPYLD 63
T +T SE K + N L L + E++ I +N R L D + +Y L+ L+
Sbjct: 903 TLVTLREDLVSEKLKTQQMNNDLEKLTH-ELEKIGLNKERLLHDEQSTDDRYKLLESKLE 961
Query: 64 Q-----INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+ + EE++AALE + Y+++L + K ++K
Sbjct: 962 STLKKSLEIKEEKIAALEARLEESTNYNQQLRQELKTVKK 1001
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 34 YLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE 90
Y E + A + L L ++ LQ + + + E++ ALEQ +L+ ++KL+
Sbjct: 620 YKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLK 676
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 12 ELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQ 71
ELT T + + NK+ +L EM + NIS+ K+ Q LD + V E++
Sbjct: 962 ELTLTKVEKEKHATENKVKNLSE-EMTALEENISKLTKEKKSLQEAHQQTLDDLQVEEDK 1020
Query: 72 VAALEQAAYKLDAYSKKLEAKYKKLEK 98
V L + KL+ + LE ++ +K
Sbjct: 1021 VNGLIKINAKLEQQTDDLEGSLEQEKK 1047
>gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]
Length = 446
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 4 KMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLD 63
K + + EL E+ + L+++NK LK E KD LK+ NQK + +
Sbjct: 168 KQNSDMQAELQKKQEELETLQSINKKLELKVKEQKDYWETELLQLKEQNQKMSSENEKMG 227
Query: 64 -QINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+++ ++ Q++ E+ KL + + ++L+K
Sbjct: 228 IRVDQLQAQLSTQEKEMEKLVQGDQDKTEQLEQLKK 263
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP----YLDQ 64
L +L A +E E + + K E+++I ++ +++ ++ LQ
Sbjct: 885 LQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKKKMQQN 944
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
I +EEQ+ E A KL EAK KKLE+
Sbjct: 945 IQELEEQLEEEESARQKLQLEKVTTEAKLKKLEE 978
>gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2
[Homo sapiens]
Length = 1235
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVI 68
LT +L T ++ K +E + +Y++ K+ N S +LK L+ ++ Q +
Sbjct: 273 LTRQLQQTEKELKSVETLLNQKRPQYIKAKE---NTSHHLKKLDVAKKSIKDSEKQCSKQ 329
Query: 69 EEQVAALEQAAYKLDAYSKKLEAKYKK 95
E+ + ALE LDA + E + ++
Sbjct: 330 EDDIKALETELADLDAAWRSFEKQIEE 356
>gi|14165274 golgi-associated microtubule-binding protein HOOK3
[Homo sapiens]
Length = 718
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 12 ELTATSEDYKL-LENMNKLT-SLKYLEMKDI-----AINISRNLKDLNQKYAGLQPYLDQ 64
+L E YK LE++ L +K LE K+ +++ L+ N + L+ Y Q
Sbjct: 315 KLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARSQLETYKRQ 374
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+ ++ +++ + A KLD K+L+ K L+K
Sbjct: 375 VVELQNRLSEESKKADKLDFEYKRLKEKVDSLQK 408
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 9 LTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINV- 67
L +L A +E + E M + K E+++I ++ +++ ++ LQ ++
Sbjct: 892 LAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAH 951
Query: 68 ---IEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+EEQ+ E A KL EAK KK+E+
Sbjct: 952 IQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEE 985
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 35 LEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYK 94
L++K+ + L+++ +K+ Q L++ N++ EQ+ A + + + +L AK +
Sbjct: 862 LKVKEKQTKVEGELEEMERKH---QQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQ 918
Query: 95 KLEK 98
+LE+
Sbjct: 919 ELEE 922
>gi|96975038 coiled-coil domain containing 100 [Homo sapiens]
Length = 986
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 7 TYLTGELTATSEDYKLLEN-MNKLTSLKYLEMKDIAINISRNLKDLNQKYA-GLQPYLDQ 64
T L G+L T D + E + + S E K++ RNL++L + + Q
Sbjct: 706 TILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQ 765
Query: 65 INVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 98
+ + ++ LE+ ++L E KYK LEK
Sbjct: 766 VELERLKIKQLEEDKHRLQQQLNDAENKYKILEK 799
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 35 LEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYK 94
LE KD A+ KDL +K L+ + + EE+ ALEQ L+ K LE K K
Sbjct: 1422 LEQKDKALEPKD--KDLEEKDKALE---QKDKIPEEKDKALEQKDTALEQKDKALEPKDK 1476
Query: 95 KLEKR 99
LE++
Sbjct: 1477 DLEQK 1481
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 46 RNLKDLNQKYAGLQPYL-DQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
+ +KD NQ+ A ++ L D I + + + Q L+ + ++ KYK+L+KR
Sbjct: 310 KQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKR 364
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 22 LLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINV------IEEQVAAL 75
+++NM+ +KYLEMK + + L L Q+ + + ++++ L
Sbjct: 218 IIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQEAVLL 277
Query: 76 EQAAYKLDAYSKKLEAKYKKL 96
+ Y+L+++ ++ A+ K +
Sbjct: 278 HEKLYELESHRDQMIAEDKSI 298
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 46 RNLKDLNQKYAGLQPYL-DQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
+ +KD NQ+ A ++ L D I + + + Q L+ + ++ KYK+L+KR
Sbjct: 310 KQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKR 364
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 22 LLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINV------IEEQVAAL 75
+++NM+ +KYLEMK + + L L Q+ + + ++++ L
Sbjct: 218 IIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQEAVLL 277
Query: 76 EQAAYKLDAYSKKLEAKYKKL 96
+ Y+L+++ ++ A+ K +
Sbjct: 278 HEKLYELESHRDQMIAEDKSI 298
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 46 RNLKDLNQKYAGLQPYL-DQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
+ +KD NQ+ A ++ L D I + + + Q L+ + ++ KYK+L+KR
Sbjct: 310 KQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKR 364
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 22 LLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINV------IEEQVAAL 75
+++NM+ +KYLEMK + + L L Q+ + + ++++ L
Sbjct: 218 IIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQEAVLL 277
Query: 76 EQAAYKLDAYSKKLEAKYKKL 96
+ Y+L+++ ++ A+ K +
Sbjct: 278 HEKLYELESHRDQMIAEDKSI 298
>gi|42794618 transmembrane protein 81 [Homo sapiens]
Length = 255
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 11 GELTATSEDYKLLENMNKLTSLKYLEMKDIA-----INISRNLKDLNQKYAGLQ---PYL 62
G ++ E +K + + KY + D + + +NL+ + + Y GL+ P L
Sbjct: 126 GVISTDDEVFKPFQANSHFVKFKYAQEYDSGTYRCDVQLVKNLRLVKRLYFGLRVLPPNL 185
Query: 63 DQIN----VIEEQVAALEQAAYKLDAYSKKLEAKYKK 95
+N + E+Q E LD+YSK K+KK
Sbjct: 186 VNLNFHQSLTEDQKLIDEGLEVNLDSYSKPHHPKWKK 222
>gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
Length = 445
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 21 KLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAY 80
K +EN++K ++ I +N N + LN+++A L P + I +++ EQA
Sbjct: 77 KYMENLSKEYQTLEQCLQHIPVN-EENRRSLNRRHAELAP----LAAIYQEIQETEQAIE 131
Query: 81 KLDAYSKKLEAKYKK 95
+L++ K L + +K
Sbjct: 132 ELESMCKSLNKQDEK 146
>gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens]
Length = 963
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 12 ELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQI 65
EL ++ + + NK + + LE+ + N R +DL KY+ L+ L QI
Sbjct: 485 ELDRLKDNLQGYKTQNKFLNKEILELSALRRNAERRERDLMAKYSSLEAKLCQI 538
>gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens]
Length = 914
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 12 ELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQI 65
EL ++ + + NK + + LE+ + N R +DL KY+ L+ L QI
Sbjct: 485 ELDRLKDNLQGYKTQNKFLNKEILELSALRRNAERRERDLMAKYSSLEAKLCQI 538
>gi|22208955 ankyrin repeat and SOCS box-containing protein 12
[Homo sapiens]
Length = 309
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 47 NLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYS 86
NL D+ + ++ LQP ++ + E+ AL QA Y D+Y+
Sbjct: 2 NLMDITKIFSLLQPDKEEEDTDTEEKQALNQAVYDNDSYT 41
>gi|32171247 cyclin Y isoform 1 [Homo sapiens]
Length = 341
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 23 LENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKL 82
+E+MN+L ++LE+ IN+ ++ + Y L+ + N+ + A+KL
Sbjct: 246 VEDMNELER-QFLELLQFNINVPSSV--YAKYYFDLRSLAEANNLSFPLEPLSRERAHKL 302
Query: 83 DAYSKKLEAKYKKLEK 98
+A S+ E KYK L +
Sbjct: 303 EAISRLCEDKYKDLRR 318
>gi|190341110 cyclin Y isoform 2 [Homo sapiens]
Length = 287
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 23 LENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKL 82
+E+MN+L ++LE+ IN+ ++ + Y L+ + N+ + A+KL
Sbjct: 192 VEDMNELER-QFLELLQFNINVPSSV--YAKYYFDLRSLAEANNLSFPLEPLSRERAHKL 248
Query: 83 DAYSKKLEAKYKKLEK 98
+A S+ E KYK L +
Sbjct: 249 EAISRLCEDKYKDLRR 264
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 13 LTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQV 72
LT+ E+ K ++NMN L + +++ +A + +L + + D+I ++EEQ+
Sbjct: 630 LTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQL 689
Query: 73 ---AALEQAAYK-LDAYSKKLEAKYKKLE 97
+ + +K L+ +K L+++ +KL+
Sbjct: 690 QHEISNKMEEFKILNDQNKALKSEVQKLQ 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,704,448
Number of Sequences: 37866
Number of extensions: 91039
Number of successful extensions: 632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 148
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.