BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 isoform 1 [Homo sapiens] (443 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 ... 888 0.0 gi|219842262 COP9 constitutive photomorphogenic homolog subunit ... 881 0.0 gi|28872725 proteasome 26S non-ATPase subunit 11 [Homo sapiens] 114 2e-25 gi|47078240 G protein pathway suppressor 1 isoform 2 [Homo sapiens] 46 8e-05 gi|47078238 G protein pathway suppressor 1 isoform 1 [Homo sapiens] 46 8e-05 gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo ... 41 0.002 gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo... 41 0.002 gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 39 0.007 gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 39 0.007 gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 39 0.007 gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 39 0.007 gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 39 0.009 gi|120432044 vav 3 guanine nucleotide exchange factor isoform 1 ... 36 0.080 gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 35 0.18 gi|87299626 hypothetical protein LOC283461 [Homo sapiens] 34 0.30 gi|4503521 eukaryotic translation initiation factor 3, subunit 6... 34 0.30 gi|116256333 membrane metallo-endopeptidase [Homo sapiens] 33 0.40 gi|116256331 membrane metallo-endopeptidase [Homo sapiens] 33 0.40 gi|116256327 membrane metallo-endopeptidase [Homo sapiens] 33 0.40 gi|116256329 membrane metallo-endopeptidase [Homo sapiens] 33 0.40 gi|23397429 eukaryotic translation initiation factor 3, subunit ... 33 0.40 gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7... 33 0.40 gi|7661914 proteasome (prosome, macropain) 26S subunit, non-ATPa... 33 0.40 gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 33 0.52 gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 33 0.52 gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapi... 32 1.2 gi|27734905 aprataxin and PNKP like factor [Homo sapiens] 32 1.5 gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 32 1.5 gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 32 1.5 gi|46049110 myosin binding protein C, slow type isoform 4 [Homo ... 32 1.5 >gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 isoform 1 [Homo sapiens] Length = 443 Score = 888 bits (2295), Expect = 0.0 Identities = 443/443 (100%), Positives = 443/443 (100%) Query: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60 Query: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS Sbjct: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120 Query: 121 TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ 180 TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ Sbjct: 121 TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ 180 Query: 181 TDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC 240 TDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC Sbjct: 181 TDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIREC 240 Query: 241 GGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK 300 GGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK Sbjct: 241 GGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK 300 Query: 301 PYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLI 360 PYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLI Sbjct: 301 PYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLI 360 Query: 361 KLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGAR 420 KLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGAR Sbjct: 361 KLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGAR 420 Query: 421 YTALDKWTNQLNSLNQAVVSKLA 443 YTALDKWTNQLNSLNQAVVSKLA Sbjct: 421 YTALDKWTNQLNSLNQAVVSKLA 443 >gi|219842262 COP9 constitutive photomorphogenic homolog subunit 2 isoform 2 [Homo sapiens] Length = 450 Score = 881 bits (2277), Expect = 0.0 Identities = 443/450 (98%), Positives = 443/450 (98%), Gaps = 7/450 (1%) Query: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60 Query: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS Sbjct: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120 Query: 121 TSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR 173 TSKQ MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR Sbjct: 121 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR 180 Query: 174 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI 233 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI Sbjct: 181 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI 240 Query: 234 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 293 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP Sbjct: 241 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 300 Query: 294 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN 353 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN Sbjct: 301 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN 360 Query: 354 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH 413 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH Sbjct: 361 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH 420 Query: 414 QKRGGARYTALDKWTNQLNSLNQAVVSKLA 443 QKRGGARYTALDKWTNQLNSLNQAVVSKLA Sbjct: 421 QKRGGARYTALDKWTNQLNSLNQAVVSKLA 450 >gi|28872725 proteasome 26S non-ATPase subunit 11 [Homo sapiens] Length = 422 Score = 114 bits (284), Expect = 2e-25 Identities = 90/325 (27%), Positives = 157/325 (48%), Gaps = 28/325 (8%) Query: 95 LLTYIR---SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLEALKDAKNDR 146 LL Y+R +++++ + + + S+LD +T ++++L E +E K K Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLE----CIEWAKSEKRTF 124 Query: 147 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 206 L +L LY + + Y + + QL + + D + L+E+ LE + Y Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYH 178 Query: 207 AQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 264 A N K +A + +AI P + + G +H E +++ A++ F+EAF+ Sbjct: 179 ALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 238 Query: 265 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSAYQ 319 YD SP+ T LKY++L +++ + P D Q K + A+ + A + Sbjct: 239 YDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASK 295 Query: 320 NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN 379 N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS + Sbjct: 296 NRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIK 355 Query: 380 IDVADVESLLVQCILDNTIHGRIDQ 404 + ADVE L Q ILD HG +DQ Sbjct: 356 LSKADVERKLSQMILDKKFHGILDQ 380 >gi|47078240 G protein pathway suppressor 1 isoform 2 [Homo sapiens] Length = 491 Score = 45.8 bits (107), Expect = 8e-05 Identities = 24/82 (29%), Positives = 41/82 (50%) Query: 328 KILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVES 387 K+L N++ D ++ H+ L IR + LI+ PY + ++ N VA +E Sbjct: 343 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALED 402 Query: 388 LLVQCILDNTIHGRIDQVNQLL 409 L Q IL+ I R+D +++L Sbjct: 403 ELTQLILEGLISARVDSHSKIL 424 >gi|47078238 G protein pathway suppressor 1 isoform 1 [Homo sapiens] Length = 527 Score = 45.8 bits (107), Expect = 8e-05 Identities = 24/82 (29%), Positives = 41/82 (50%) Query: 328 KILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVES 387 K+L N++ D ++ H+ L IR + LI+ PY + ++ N VA +E Sbjct: 379 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALED 438 Query: 388 LLVQCILDNTIHGRIDQVNQLL 409 L Q IL+ I R+D +++L Sbjct: 439 ELTQLILEGLISARVDSHSKIL 460 >gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo sapiens] Length = 456 Score = 40.8 bits (94), Expect = 0.002 Identities = 56/319 (17%), Positives = 137/319 (42%), Gaps = 49/319 (15%) Query: 156 GKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK 215 GK+Y+E E +L K L + + D+K+ +L+ L+++ Y + + ++++ Sbjct: 134 GKIYVEIER-ARLTKTLATIKEQ------NGDVKEAASILQ--ELQVETYGSMEKKERVE 184 Query: 216 ALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 275 + EQ + + A+ + +I + +E EK ++ D+ + Sbjct: 185 FILEQ-MRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSI 243 Query: 276 CLKYLV-----------------LANMLMKSGINPFDSQEAKPY------KNDPEILAMT 312 C Y L ++++ + PFD++++ K EI Sbjct: 244 CKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYK 303 Query: 313 NLVSAYQNNDITEFEKILKTNHSNI----MDDPFI-----REHIEELLRNIRTQVL---I 360 +L+ + ++ + +++ + ++ P E E+ ++++ +V+ I Sbjct: 304 DLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNI 363 Query: 361 KLI-KPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA 419 +++ K YTRI + +++ L++ V + E+ L +++ TI ++D++ ++ K Sbjct: 364 RIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPN- 422 Query: 420 RYTALDKWTNQLNSLNQAV 438 L+ W+ +LNSL V Sbjct: 423 --NLLNDWSQKLNSLMSLV 439 >gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo sapiens] Length = 436 Score = 40.8 bits (94), Expect = 0.002 Identities = 56/319 (17%), Positives = 137/319 (42%), Gaps = 49/319 (15%) Query: 156 GKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK 215 GK+Y+E E +L K L + + D+K+ +L+ L+++ Y + + ++++ Sbjct: 114 GKIYVEIER-ARLTKTLATIKEQ------NGDVKEAASILQ--ELQVETYGSMEKKERVE 164 Query: 216 ALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 275 + EQ + + A+ + +I + +E EK ++ D+ + Sbjct: 165 FILEQ-MRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSI 223 Query: 276 CLKYLV-----------------LANMLMKSGINPFDSQEAKPY------KNDPEILAMT 312 C Y L ++++ + PFD++++ K EI Sbjct: 224 CKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYK 283 Query: 313 NLVSAYQNNDITEFEKILKTNHSNI----MDDPFI-----REHIEELLRNIRTQVL---I 360 +L+ + ++ + +++ + ++ P E E+ ++++ +V+ I Sbjct: 284 DLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNI 343 Query: 361 KLI-KPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA 419 +++ K YTRI + +++ L++ V + E+ L +++ TI ++D++ ++ K Sbjct: 344 RIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPN- 402 Query: 420 RYTALDKWTNQLNSLNQAV 438 L+ W+ +LNSL V Sbjct: 403 --NLLNDWSQKLNSLMSLV 419 >gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo sapiens] Length = 1972 Score = 39.3 bits (90), Expect = 0.007 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 27/231 (11%) Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67 DL+ ++ N E L+ Q + + ED+ K L K LEL+ + Sbjct: 1579 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1638 Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMD 126 G +A+KQ+ K+ ++ +F + + I + N EK S+ + Sbjct: 1639 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL------EADLM 1690 Query: 127 LLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184 LQE A K D + + L + + L ++E +L+ + QL + + + G Sbjct: 1691 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQG 1750 Query: 185 -----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 228 D ++K TQ E + E+ + TAQKN + L Q+ ++S + Sbjct: 1751 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1801 >gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo sapiens] Length = 1979 Score = 39.3 bits (90), Expect = 0.007 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 27/231 (11%) Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67 DL+ ++ N E L+ Q + + ED+ K L K LEL+ + Sbjct: 1586 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1645 Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMD 126 G +A+KQ+ K+ ++ +F + + I + N EK S+ + Sbjct: 1646 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL------EADLM 1697 Query: 127 LLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184 LQE A K D + + L + + L ++E +L+ + QL + + + G Sbjct: 1698 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQG 1757 Query: 185 -----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 228 D ++K TQ E + E+ + TAQKN + L Q+ ++S + Sbjct: 1758 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1808 >gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo sapiens] Length = 1945 Score = 39.3 bits (90), Expect = 0.007 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 27/231 (11%) Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67 DL+ ++ N E L+ Q + + ED+ K L K LEL+ + Sbjct: 1586 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1645 Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMD 126 G +A+KQ+ K+ ++ +F + + I + N EK S+ + Sbjct: 1646 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL------EADLM 1697 Query: 127 LLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184 LQE A K D + + L + + L ++E +L+ + QL + + + G Sbjct: 1698 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQG 1757 Query: 185 -----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 228 D ++K TQ E + E+ + TAQKN + L Q+ ++S + Sbjct: 1758 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1808 >gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo sapiens] Length = 1938 Score = 39.3 bits (90), Expect = 0.007 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 27/231 (11%) Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67 DL+ ++ N E L+ Q + + ED+ K L K LEL+ + Sbjct: 1579 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1638 Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMD 126 G +A+KQ+ K+ ++ +F + + I + N EK S+ + Sbjct: 1639 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL------EADLM 1690 Query: 127 LLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184 LQE A K D + + L + + L ++E +L+ + QL + + + G Sbjct: 1691 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQG 1750 Query: 185 -----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 228 D ++K TQ E + E+ + TAQKN + L Q+ ++S + Sbjct: 1751 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1801 >gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] Length = 4646 Score = 38.9 bits (89), Expect = 0.009 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 20/169 (11%) Query: 108 SEKSINSILDYISTSKQMDLLQEFYET-----TLEALKDAK--NDRLWFKTNTKLGKLYL 160 S ++ I +++ + + +QE E+ TL+ LK K + + F T+T L + Sbjct: 268 SGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATVSFDTDTGLKQALE 327 Query: 161 EREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQ 220 +Y L K D +DL T+L +I + ++T + + K ++ Sbjct: 328 TVNDYNPLMK-----------DFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQR 376 Query: 221 SLHIKSAIPHPLIMGVIRECGGK--MHLREGEFEKAHTDFFEAFKNYDE 267 +L + AI L +++ G + MH+ EFEK FE F+ +D+ Sbjct: 377 ALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDD 425 >gi|120432044 vav 3 guanine nucleotide exchange factor isoform 1 [Homo sapiens] Length = 847 Score = 35.8 bits (81), Expect = 0.080 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 33/157 (21%) Query: 1 MSDMEDDFMCDDEED-YDLEYSEDSNSEPNVDL--ENQYYNSKALKEDDPKAALSSFQKV 57 + D+ D+ + +DEED YD Y ED E DL + + K + D L+ ++ Sbjct: 144 LPDLIDETLVEDEEDLYDCVYGEDEGGEVYEDLMKAEEAHQPKCPENDIRSCCLAEIKQT 203 Query: 58 LELEGEKGE----WGFKALKQMI---KINFKLTNFPEMMNRYKQLLTYIRSAVTR----- 105 E E E + LK+ + + + N PE++ ++ L+ I ++ Sbjct: 204 EEKYTETLESIEKYFMAPLKRFLTAAEFDSVFINIPELVKLHRNLMQEIHDSIVNKNDQN 263 Query: 106 ------NYSEK------------SINSILDYISTSKQ 124 NY E+ S S LDYIS +K+ Sbjct: 264 LYQVFINYKERLVIYGQYCSGVESAISSLDYISKTKE 300 >gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] Length = 1979 Score = 34.7 bits (78), Expect = 0.18 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 36/256 (14%) Query: 32 LENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNR 91 LE + + + + ED ++ + Q + E + E E+ ++ +QM + +L F E Sbjct: 908 LEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQH-EQMNATHTQL--FLEKDEE 964 Query: 92 YKQLLTYIRSAVTRNYSEK----SINS---------ILDYISTSKQMDLLQEFYETTLEA 138 K L I T+ + E+ + NS L+ + S++ DL + E ++ Sbjct: 965 IKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKG 1024 Query: 139 LKDAKND-RLWFKTNTKLGKLY--LEREEYGKLQKILRQ-------LHQSCQTDDGEDDL 188 +K+ + + +L + N L K L ++E GKL +I++Q LH + D+ Sbjct: 1025 IKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSTSHTQDV 1084 Query: 189 KKGTQLLEIYALEIQMYTAQKN-----NKKLKALYEQSLHIKSAIPHPLIMGVIRECGGK 243 Q L+ YA+E + A N N LK Y + + I +A LI +++ K Sbjct: 1085 VYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIK--LQDENKK 1142 Query: 244 MHLREGEFEKAHTDFF 259 + R FE + D F Sbjct: 1143 LSTR---FESSGQDMF 1155 >gi|87299626 hypothetical protein LOC283461 [Homo sapiens] Length = 652 Score = 33.9 bits (76), Expect = 0.30 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 22/168 (13%) Query: 10 CDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKED------DPKAALSSFQKV------ 57 C + Y EY+++ ++ + EN YY S + +++ K S QK Sbjct: 371 CQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMG 430 Query: 58 ---LELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINS 114 E K W F + +++ + + ++ K L +S+ + +YS + +S Sbjct: 431 NIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDS 490 Query: 115 ILDYISTSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLER 162 S DL E + + ++D ++R+ KT K+ Y+ER Sbjct: 491 CF-----SSSSDLPSEDEDQISQQIED--SNRMTIKTKEKMNNFYVER 531 >gi|4503521 eukaryotic translation initiation factor 3, subunit 6 48kDa [Homo sapiens] Length = 445 Score = 33.9 bits (76), Expect = 0.30 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 297 QEAKPYKNDPEILAMTNLVSA-YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIR 355 QE+ YK DP +T V Y N D +K L+ S +++D F+ +E+ + N R Sbjct: 283 QESYTYK-DP----ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR 337 Query: 356 TQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRID 403 + + + I I ++ +LN+ + E +V I + + +ID Sbjct: 338 LFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKID 385 >gi|116256333 membrane metallo-endopeptidase [Homo sapiens] Length = 750 Score = 33.5 bits (75), Expect = 0.40 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 39/224 (17%) Query: 30 VDLENQYYNSKALKED--DP-----KAALSSFQK--VLELEGEKGEWGFKALKQMIKINF 80 ++LE + N+ A ED DP K L+ Q LE+ G+ W + M +N Sbjct: 277 MELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNI 336 Query: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALK 140 +TN +++ + LT ++ +T+ YS + + +++ + + L Y+ + A + Sbjct: 337 SITNEEDVVVYAPEYLTKLKPILTK-YSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFR 395 Query: 141 DA-----KNDRLWFK--------TNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDD 187 A W + +G+LY+E G+ + ++ L Sbjct: 396 KALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLI----------- 444 Query: 188 LKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHP 231 Q+ E++ + T K +A E++L IK I +P Sbjct: 445 ----AQIREVFIQTLDDLTWMDAETKKRA-EEKALAIKERIGYP 483 >gi|116256331 membrane metallo-endopeptidase [Homo sapiens] Length = 750 Score = 33.5 bits (75), Expect = 0.40 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 39/224 (17%) Query: 30 VDLENQYYNSKALKED--DP-----KAALSSFQK--VLELEGEKGEWGFKALKQMIKINF 80 ++LE + N+ A ED DP K L+ Q LE+ G+ W + M +N Sbjct: 277 MELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNI 336 Query: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALK 140 +TN +++ + LT ++ +T+ YS + + +++ + + L Y+ + A + Sbjct: 337 SITNEEDVVVYAPEYLTKLKPILTK-YSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFR 395 Query: 141 DA-----KNDRLWFK--------TNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDD 187 A W + +G+LY+E G+ + ++ L Sbjct: 396 KALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLI----------- 444 Query: 188 LKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHP 231 Q+ E++ + T K +A E++L IK I +P Sbjct: 445 ----AQIREVFIQTLDDLTWMDAETKKRA-EEKALAIKERIGYP 483 >gi|116256327 membrane metallo-endopeptidase [Homo sapiens] Length = 750 Score = 33.5 bits (75), Expect = 0.40 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 39/224 (17%) Query: 30 VDLENQYYNSKALKED--DP-----KAALSSFQK--VLELEGEKGEWGFKALKQMIKINF 80 ++LE + N+ A ED DP K L+ Q LE+ G+ W + M +N Sbjct: 277 MELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNI 336 Query: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALK 140 +TN +++ + LT ++ +T+ YS + + +++ + + L Y+ + A + Sbjct: 337 SITNEEDVVVYAPEYLTKLKPILTK-YSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFR 395 Query: 141 DA-----KNDRLWFK--------TNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDD 187 A W + +G+LY+E G+ + ++ L Sbjct: 396 KALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLI----------- 444 Query: 188 LKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHP 231 Q+ E++ + T K +A E++L IK I +P Sbjct: 445 ----AQIREVFIQTLDDLTWMDAETKKRA-EEKALAIKERIGYP 483 >gi|116256329 membrane metallo-endopeptidase [Homo sapiens] Length = 750 Score = 33.5 bits (75), Expect = 0.40 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 39/224 (17%) Query: 30 VDLENQYYNSKALKED--DP-----KAALSSFQK--VLELEGEKGEWGFKALKQMIKINF 80 ++LE + N+ A ED DP K L+ Q LE+ G+ W + M +N Sbjct: 277 MELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNI 336 Query: 81 KLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALK 140 +TN +++ + LT ++ +T+ YS + + +++ + + L Y+ + A + Sbjct: 337 SITNEEDVVVYAPEYLTKLKPILTK-YSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFR 395 Query: 141 DA-----KNDRLWFK--------TNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDD 187 A W + +G+LY+E G+ + ++ L Sbjct: 396 KALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLI----------- 444 Query: 188 LKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHP 231 Q+ E++ + T K +A E++L IK I +P Sbjct: 445 ----AQIREVFIQTLDDLTWMDAETKKRA-EEKALAIKERIGYP 483 >gi|23397429 eukaryotic translation initiation factor 3, subunit M [Homo sapiens] Length = 374 Score = 33.5 bits (75), Expect = 0.40 Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Query: 348 EELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQ 407 E+ + +R + + I + +EL I DVE+ ++ + ++ +IDQ + Sbjct: 271 EQNMAKMRLLTFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQR 330 Query: 408 LLELDH-------QKRGGARYTALDKWTNQLNSLNQAVVS 440 + + H +++ Y L+ W LN + +++S Sbjct: 331 KVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKVKNSLLS 370 >gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7B [Homo sapiens] Length = 264 Score = 33.5 bits (75), Expect = 0.40 Identities = 16/45 (35%), Positives = 32/45 (71%), Gaps = 3/45 (6%) Query: 371 IPF--ISKELNI-DVADVESLLVQCILDNTIHGRIDQVNQLLELD 412 IP+ + K+L + ++ ++E L+++ + + I G++DQ NQLLE+D Sbjct: 111 IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVD 155 >gi|7661914 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Homo sapiens] Length = 389 Score = 33.5 bits (75), Expect = 0.40 Identities = 17/85 (20%), Positives = 40/85 (47%) Query: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385 F + L + D H +R +R +L++ Y + + ++++ + V + Sbjct: 271 FFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFI 330 Query: 386 ESLLVQCILDNTIHGRIDQVNQLLE 410 + L + I +H +ID+VN+++E Sbjct: 331 DQELSRFIAAGRLHCKIDKVNEIVE 355 >gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] Length = 1946 Score = 33.1 bits (74), Expect = 0.52 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%) Query: 12 DEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKG-----E 66 + E + LE + N E +EN + + L E+ K L Q ++E EKG + Sbjct: 1061 ERELHKLEGNLKLNRE---SMENLESSQRHLAEELRKKELELSQMNSKVENEKGLVAQLQ 1117 Query: 67 WGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMD 126 K L+ IK + K E R K + R+ +T++ ++ +N L+ + S Sbjct: 1118 KTVKELQTQIK-DLKEKLEAERTTRAK--MERERADLTQDLAD--LNERLEEVGGSSLAQ 1172 Query: 127 L-LQEFYETTLEAL-KDAKNDRLWFKTNT-KLGKLYLER--EEYGKLQKILRQLHQSCQT 181 L + + ET + L +D + L F+T + L K + + E G+++ L+Q+ Q + Sbjct: 1173 LEITKKQETKFQKLHRDMEEATLHFETTSASLKKRHADSLAELEGQVEN-LQQVKQKLEK 1231 Query: 182 DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSA 227 D + L+ L + QM A+ N +KL LYE+ LH +A Sbjct: 1232 DKSDLQLEVDDLLTRVE----QMTRAKANAEKLCTLYEERLHEATA 1273 >gi|54607116 leiomodin 3 (fetal) [Homo sapiens] Length = 560 Score = 33.1 bits (74), Expect = 0.52 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%) Query: 5 EDDFMCDDEEDYDLEYSEDSNSEP---------NVDLENQYYNSKALKE--DDPKAALSS 53 E+D DDE + D E SE++N E N + Q KA KE D P+A S Sbjct: 150 EEDDDDDDEGEDDGEESEETNREEEGKAKEQIRNCENNCQQVTDKAFKEQRDRPEAQEQS 209 Query: 54 FQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSIN 113 +K+ +L+ +K LK + + T+ + R ++ ++ N Sbjct: 210 EKKISKLDPKKLALDTSFLKVSTRPSGNQTDLDGSLRRVRKNDPDMKELNLNNIENIPKE 269 Query: 114 SILDYISTSKQMDLLQEF 131 +LD+++ K+ ++ F Sbjct: 270 MLLDFVNAMKKNKHIKTF 287 >gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapiens] Length = 1758 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 12 DEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKA 71 D++ Y E S+D + EP V + + + E+ K S K+ + E +W + Sbjct: 1024 DDDAYKTEDSDDIHFEPVVQMPEKV--ELVIGEEGEKVLYSQGVKLFRFDAEVRQWKERG 1081 Query: 72 LKQMIKINFKLTNFPEMMNRYKQLL 96 L + + ++ P M+ R +Q+L Sbjct: 1082 LGNLKILKNEVNGKPRMLMRREQVL 1106 >gi|27734905 aprataxin and PNKP like factor [Homo sapiens] Length = 511 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 3 DMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKE 44 D+ D F+ D+EEDY+ EDS+ EP + E + + LKE Sbjct: 463 DLNDSFLDDEEEDYE-PTDEDSDWEPGKEDEEKEDVEELLKE 503 >gi|189217904 RPGRIP1-like isoform b [Homo sapiens] Length = 1235 Score = 31.6 bits (70), Expect = 1.5 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 321 NDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNI 380 ND+ + ++LK N+ + D F H E+ KL + ++ I + L Sbjct: 349 NDLEKERELLKENYDKLYDSAFSAAHEEQW----------KLKEQQLKVQIAQLETALKS 398 Query: 381 DVADVESLLVQCILDNTIHGRIDQVNQLLELDH--QKRGGARYTALDKWTNQLNSLNQAV 438 D+ D +L + + + ++ Q N+ L+L + QK+ K NQ N +N Sbjct: 399 DLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQENDINADE 458 Query: 439 VSK 441 +S+ Sbjct: 459 LSE 461 >gi|118442834 RPGRIP1-like isoform a [Homo sapiens] Length = 1315 Score = 31.6 bits (70), Expect = 1.5 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 321 NDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNI 380 ND+ + ++LK N+ + D F H E+ KL + ++ I + L Sbjct: 349 NDLEKERELLKENYDKLYDSAFSAAHEEQW----------KLKEQQLKVQIAQLETALKS 398 Query: 381 DVADVESLLVQCILDNTIHGRIDQVNQLLELDH--QKRGGARYTALDKWTNQLNSLNQAV 438 D+ D +L + + + ++ Q N+ L+L + QK+ K NQ N +N Sbjct: 399 DLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQENDINADE 458 Query: 439 VSK 441 +S+ Sbjct: 459 LSE 461 >gi|46049110 myosin binding protein C, slow type isoform 4 [Homo sapiens] Length = 1123 Score = 31.6 bits (70), Expect = 1.5 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 29/187 (15%) Query: 12 DEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGE----- 66 D +DLE E + + PN+D+ + + S +ED + S K E++ ++ E Sbjct: 151 DSCSFDLEVHESTGTTPNIDIRSAFKRSGEGQEDAGELDFSGLLKRREVKQQEEEPQVDV 210 Query: 67 WGFKALK-------QMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 119 W + LK + I + +T+ M+ R K++ EK + + Sbjct: 211 W--ELLKNAKPSEYEKIAFQYGITDLRGMLKRLKRM----------RREEKKSAAFAKIL 258 Query: 120 STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSC 179 + Q+D + + L D K + W+K ++ E+ Q+IL +C Sbjct: 259 DPAYQVD--KGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL--FINNC 314 Query: 180 Q-TDDGE 185 Q TDD E Sbjct: 315 QMTDDSE 321 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,307,692 Number of Sequences: 37866 Number of extensions: 650388 Number of successful extensions: 2461 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 45 Number of HSP's that attempted gapping in prelim test: 2413 Number of HSP's gapped (non-prelim): 91 length of query: 443 length of database: 18,247,518 effective HSP length: 105 effective length of query: 338 effective length of database: 14,271,588 effective search space: 4823796744 effective search space used: 4823796744 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.