Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4759202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759202 synaptogyrin 2 [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759202 synaptogyrin 2 [Homo sapiens] 463 e-131
gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens] 223 1e-58
gi|22035698 synaptogyrin 1 isoform 1b [Homo sapiens] 196 1e-50
gi|6631112 synaptogyrin 3 [Homo sapiens] 191 3e-49
gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens] 166 1e-41
gi|22035702 synaptogyrin 4 [Homo sapiens] 130 7e-31
gi|194018518 synaptoporin isoform 1 [Homo sapiens] 35 0.068
gi|21389481 synaptoporin isoform 2 [Homo sapiens] 35 0.068
gi|110349721 titin isoform novex-3 [Homo sapiens] 34 0.12
gi|190684671 mitogen-activated protein kinase binding protein 1 ... 31 0.98
gi|190684677 mitogen-activated protein kinase binding protein 1 ... 31 0.98
gi|21359974 vitrin [Homo sapiens] 29 2.8
gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens] 28 4.9
gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens] 28 4.9
gi|34577107 RNA-binding region containing protein 1 isoform a [H... 28 4.9
gi|31542671 liver regeneration p-53 related protein [Homo sapiens] 28 4.9
gi|22547184 transient receptor potential cation channel, subfami... 28 6.3
gi|229577048 butyrophilin-like 8 isoform 6 [Homo sapiens] 28 6.3
gi|229577043 butyrophilin-like 8 isoform 5 [Homo sapiens] 28 6.3
gi|229577033 butyrophilin-like 8 isoform 3 precursor [Homo sapiens] 28 6.3
gi|94957742 butyrophilin-like 8 isoform 2 precursor [Homo sapiens] 28 6.3
gi|6678271 TAR DNA binding protein [Homo sapiens] 28 8.3
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 28 8.3
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 28 8.3
>gi|4759202 synaptogyrin 2 [Homo sapiens]
Length = 224
Score = 463 bits (1191), Expect = e-131
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV
Sbjct: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
Query: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF
Sbjct: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
Query: 121 VGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQN 180
VGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQN
Sbjct: 121 VGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQN 180
Query: 181 YVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPPVY 224
YVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPPVY
Sbjct: 181 YVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPPVY 224
>gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens]
Length = 233
Score = 223 bits (567), Expect = 1e-58
Identities = 113/230 (49%), Positives = 145/230 (63%), Gaps = 12/230 (5%)
Query: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
ME GAYGA KAGG+FD + QP + R V +F+++VF I EGY N+ + +C+
Sbjct: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
Query: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
+NRN +AC YG A+GVLAFL +L +D YFPQIS+ DRK V+ D+ SA W FLWF
Sbjct: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
Query: 121 VGFCFLTNQWAVTNPKD--VLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDD-- 176
VGFC+L NQW V+ PKD + G D+ RAAI FSFFSIF+W A LA+QRY+ G D
Sbjct: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL 180
Query: 177 FIQNYVDPTPDPNTAYASY-------PGASVDNYQQPPFTQNAETTEGYQ 219
F Q+Y+DP+ D + YA Y P YQQP T + E +GYQ
Sbjct: 181 FSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTE-PQGYQ 229
>gi|22035698 synaptogyrin 1 isoform 1b [Homo sapiens]
Length = 191
Score = 196 bits (498), Expect = 1e-50
Identities = 91/173 (52%), Positives = 119/173 (68%), Gaps = 2/173 (1%)
Query: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
ME GAYGA KAGG+FD + QP + R V +F+++VF I EGY N+ + +C+
Sbjct: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
Query: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
+NRN +AC YG A+GVLAFL +L +D YFPQIS+ DRK V+ D+ SA W FLWF
Sbjct: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
Query: 121 VGFCFLTNQWAVTNPKD--VLVGADSVRAAITFSFFSIFSWGVLASLAYQRYK 171
VGFC+L NQW V+ PKD + G D+ RAAI FSFFSIF+W + A+LA +R+K
Sbjct: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK 173
>gi|6631112 synaptogyrin 3 [Homo sapiens]
Length = 229
Score = 191 bits (486), Expect = 3e-49
Identities = 104/227 (45%), Positives = 134/227 (59%), Gaps = 6/227 (2%)
Query: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
ME ++GA +AG + D F +PQ + R VF++ VF I EGY N ++ CV
Sbjct: 1 MEGASFGAGRAGAALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNTDSGPELRCV 60
Query: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
FN N ACR+G A+G+ AFLA A FL++D F QIS+ DR+ V+ DL FS LW+FLWF
Sbjct: 61 FNGNAGACRFGVALGLGAFLACAAFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWF 120
Query: 121 VGFCFLTNQWAVTNPKDVLVGA-DSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQ 179
VGFCFLTNQW T P A D+ RAAI FSFFSI SW L A QR++ G D +
Sbjct: 121 VGFCFLTNQWQRTAPGPATTQAGDAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSLF 180
Query: 180 NYVDPTPDPNTAYASYPGAS----VDNYQQPPFTQNAETT-EGYQPP 221
+ + AY YP S + YQ PPFT+ +T+ +GYQ P
Sbjct: 181 ATEQLSTGASQAYPGYPVGSGVEGTETYQSPPFTETLDTSPKGYQVP 227
>gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]
Length = 192
Score = 166 bits (421), Expect = 1e-41
Identities = 76/146 (52%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
Query: 28 ARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLV 87
+R C +F+++VF I EGY N+ + +C++NRN +AC YG A+GVLAFL +L
Sbjct: 29 SRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLA 88
Query: 88 VDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKD--VLVGADSV 145
+D YFPQIS+ DRK V+ D+ SA W FLWFVGFC+L NQW V+ PKD + G D+
Sbjct: 89 LDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAA 148
Query: 146 RAAITFSFFSIFSWGVLASLAYQRYK 171
RAAI FSFFSIF+W + A+LA +R+K
Sbjct: 149 RAAIAFSFFSIFTWSLTAALAVRRFK 174
>gi|22035702 synaptogyrin 4 [Homo sapiens]
Length = 234
Score = 130 bits (328), Expect = 7e-31
Identities = 63/150 (42%), Positives = 91/150 (60%)
Query: 19 RFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLA 78
+FL +P+ + R VF+LIVFS + +GY N ES Q++C+ N N AC + G LA
Sbjct: 17 QFLRRPKTITRVFEGVFSLIVFSSLLTDGYQNKMESPQLHCILNSNSVACSFAVGAGFLA 76
Query: 79 FLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKDV 138
FL+ FLV+D +I+ + + D + + LW +WF+GFCFL NQW + PK+
Sbjct: 77 FLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVVWFMGFCFLANQWQHSPPKEF 136
Query: 139 LVGADSVRAAITFSFFSIFSWGVLASLAYQ 168
L+G+ S +AAI F+FFSI W A LA+Q
Sbjct: 137 LLGSSSAQAAIAFTFFSILVWIFQAYLAFQ 166
>gi|194018518 synaptoporin isoform 1 [Homo sapiens]
Length = 285
Score = 34.7 bits (78), Expect = 0.068
Identities = 34/177 (19%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 53 ESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFS 112
+ +Q + + + + + V AFL S VV +F +R L+ D + +
Sbjct: 84 KERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLI--DFIVT 141
Query: 113 ALWTFLWFVGFCFLTNQWA--------VTNPKDVLV------------------GADSVR 146
+++FLW VG ++ WA T+PK+VL+ S+
Sbjct: 142 VVFSFLWLVG----SSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLN 197
Query: 147 AAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQNYVDPTPDPNTAYASYPGASVDNY 203
++ F F + W ++ + + G Q Y+ + +++ + G + D+Y
Sbjct: 198 TSVVFGFLNFILWA--GNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGGYNQDSY 252
>gi|21389481 synaptoporin isoform 2 [Homo sapiens]
Length = 265
Score = 34.7 bits (78), Expect = 0.068
Identities = 34/177 (19%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 53 ESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFS 112
+ +Q + + + + + V AFL S VV +F +R L+ D + +
Sbjct: 64 KERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLI--DFIVT 121
Query: 113 ALWTFLWFVGFCFLTNQWA--------VTNPKDVLV------------------GADSVR 146
+++FLW VG ++ WA T+PK+VL+ S+
Sbjct: 122 VVFSFLWLVG----SSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLN 177
Query: 147 AAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQNYVDPTPDPNTAYASYPGASVDNY 203
++ F F + W ++ + + G Q Y+ + +++ + G + D+Y
Sbjct: 178 TSVVFGFLNFILWA--GNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGGYNQDSY 232
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 168 QRYKAGVDDFIQNYVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPP 222
+RY + ++ Y P + Y++ PG +++ Y PP ET E Y PP
Sbjct: 5049 ERYSTPPGETLERYSTPPGETLERYSTPPGETLERYSTPP----GETLERYSTPP 5099
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 168 QRYKAGVDDFIQNYVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPP 221
+RY + ++ Y P + Y++ PG +++ Y PP E E Y P
Sbjct: 5071 ERYSTPPGETLERYSTPPGETLERYSTPPGETLERYSTPP----GEALERYSIP 5120
>gi|190684671 mitogen-activated protein kinase binding protein 1
isoform a [Homo sapiens]
Length = 1508
Score = 30.8 bits (68), Expect = 0.98
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 185 TPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPP 222
TP P T ++PG S QQ P + + E QPPP
Sbjct: 1346 TPKPRTECQAHPGPSSPCAQQLPVSSLFQGPENLQPPP 1383
>gi|190684677 mitogen-activated protein kinase binding protein 1
isoform b [Homo sapiens]
Length = 1514
Score = 30.8 bits (68), Expect = 0.98
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 185 TPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPP 222
TP P T ++PG S QQ P + + E QPPP
Sbjct: 1352 TPKPRTECQAHPGPSSPCAQQLPVSSLFQGPENLQPPP 1389
>gi|21359974 vitrin [Homo sapiens]
Length = 693
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 194 SYPGASVDNYQQPPFTQNAETTEGYQPPPV 223
+YP A + + P Q ETT+ YQ PP+
Sbjct: 145 TYPSALTYSSSKSPAAQAGETTKAYQRPPI 174
>gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens]
Length = 465
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 175 DDFIQNYVDPTP-DPNTAYASYPGASVDNYQQ--------PPFTQNAETTEGYQPPPVY 224
D F Q P P PN++Y + PG+S Y PF A+T PPP Y
Sbjct: 174 DSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTSSDPGSPFQMPADT-----PPPAY 227
>gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens]
Length = 465
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 175 DDFIQNYVDPTP-DPNTAYASYPGASVDNYQQ--------PPFTQNAETTEGYQPPPVY 224
D F Q P P PN++Y + PG+S Y PF A+T PPP Y
Sbjct: 174 DSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTSSDPGSPFQMPADT-----PPPAY 227
>gi|34577107 RNA-binding region containing protein 1 isoform a [Homo
sapiens]
Length = 239
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 172 AGVDDFIQNYVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPP 221
A V Y++ TP + AYA YP A+ D Y A + GY P
Sbjct: 160 APVPSLSSPYIEYTP-ASPAYAQYPPATYDQYPYAASPATAASFVGYSYP 208
>gi|31542671 liver regeneration p-53 related protein [Homo sapiens]
Length = 540
Score = 28.5 bits (62), Expect = 4.9
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 48 YSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYF-------PQISNATD 100
++NA+ S+Q+ ED YG L FF + YF S T
Sbjct: 84 WANANVSRQI-------EDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQ 136
Query: 101 RKYLVIGDLLFSALWTFLWFVGFCFLTN--------QWAVTNPKDVLVGADSVRAAITFS 152
K + L F + L VG N +W +G+ AA++FS
Sbjct: 137 IKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSLFEELGSSHGLAALSFS 196
Query: 153 FFSIFSWGVLASLAYQRY 170
S+ G+LA++ Y Y
Sbjct: 197 ISSLTLIGMLAAITYTAY 214
>gi|22547184 transient receptor potential cation channel, subfamily
V, member 4 isoform a [Homo sapiens]
Length = 871
Score = 28.1 bits (61), Expect = 6.3
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 43 IYGEGYSNAHESKQMYCVFNRNEDACRYGSA----IGVLAFLASAFFLVVDAYFPQISNA 98
+Y N HE + + D R A I V+++L + + AY+ +
Sbjct: 438 VYNSKIENRHEMLAVEPINELLRDKWRKFGAVSFYINVVSYLCAMVIFTLTAYYQPLEGT 497
Query: 99 TDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKDVLV----GADSVRAAITFSFF 154
Y D L A F G F TN KD+ + G +S+ +F
Sbjct: 498 PPYPYRTTVDYLRLAGEVITLFTGVLFF-----FTNIKDLFMKKCPGVNSLFIDGSFQLL 552
Query: 155 SIFSWGVLASLAYQRYKAGVDDFI 178
F + VL ++ Y AG++ ++
Sbjct: 553 -YFIYSVLVIVSAALYLAGIEAYL 575
>gi|229577048 butyrophilin-like 8 isoform 6 [Homo sapiens]
Length = 316
Score = 28.1 bits (61), Expect = 6.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 153 FFSIFSWGVLASLAYQRY--KAGVDDFIQNYVDPTPDPNTAY 192
FFS F W + A L ++R +A + D ++ V+ T DP TA+
Sbjct: 73 FFSKFQWKIQAELDWRRKHGQAELRDARKHAVEVTLDPETAH 114
>gi|229577043 butyrophilin-like 8 isoform 5 [Homo sapiens]
Length = 375
Score = 28.1 bits (61), Expect = 6.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 153 FFSIFSWGVLASLAYQRY--KAGVDDFIQNYVDPTPDPNTAY 192
FFS F W + A L ++R +A + D ++ V+ T DP TA+
Sbjct: 132 FFSKFQWKIQAELDWRRKHGQAELRDARKHAVEVTLDPETAH 173
>gi|229577033 butyrophilin-like 8 isoform 3 precursor [Homo sapiens]
Length = 384
Score = 28.1 bits (61), Expect = 6.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 153 FFSIFSWGVLASLAYQRY--KAGVDDFIQNYVDPTPDPNTAY 192
FFS F W + A L ++R +A + D ++ V+ T DP TA+
Sbjct: 141 FFSKFQWKIQAELDWRRKHGQAELRDARKHAVEVTLDPETAH 182
>gi|94957742 butyrophilin-like 8 isoform 2 precursor [Homo sapiens]
Length = 500
Score = 28.1 bits (61), Expect = 6.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 153 FFSIFSWGVLASLAYQRY--KAGVDDFIQNYVDPTPDPNTAY 192
FFS F W + A L ++R +A + D ++ V+ T DP TA+
Sbjct: 257 FFSKFQWKIQAELDWRRKHGQAELRDARKHAVEVTLDPETAH 298
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 27.7 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 158 SWGVLASLAYQRYKAGVDDFIQNYVDPTPDPNTAYAS 194
SWG++ LA Q+ ++G QN + +PN A+ S
Sbjct: 333 SWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGS 369
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 27.7 bits (60), Expect = 8.3
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 183 DPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPP 222
D P PN Y P + Y QPP+ +QP P
Sbjct: 12 DNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSP 51
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 27.7 bits (60), Expect = 8.3
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 183 DPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPP 222
D P PN Y P + Y QPP+ +QP P
Sbjct: 12 DNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSP 51
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,710,259
Number of Sequences: 37866
Number of extensions: 359317
Number of successful extensions: 1106
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 29
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.